Typing tool
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Typing tool
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Complete norovirus genomes
| MK789656 | GI.6 | |
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| GI.P11 |
ORF1: 1..5320
ORF2: 5304..6926
ORF3: 6926..7555
LOCUS MK789656 7641 bp RNA linear VRL 01-NOV-2019
DEFINITION Norovirus GI isolate G19_021 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MK789656
VERSION MK789656.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7641)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.F.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7641)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7641
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="G19_021"
/isolation_source="sewage"
/db_xref="taxon:122928"
/country="France: Nantes"
/collection_date="05-May-2014"
/note="genotype: GI.6-GI.Pb"
gene <1..5320
/gene="ORF1"
CDS <1..5320
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QCA41819.1"
/translation="NNANNTSATSRFLSRFKGLGGGASPPNPIKIKSTEMALGLIGKA
TQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWEELDTSTKEEILDS
HKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNLGVNRLTTVSGPEWNLC
PLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQAAFSVARVTI
QPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFCCQVMNLEDTWLQR
RLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKNFLGKLKPLN
VLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQGPEDLARDL
VPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLLKKYFFGGDQTE
RTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARKLSAKNADPHVI
SSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLAKRLANEI
RPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIADSAPLTLNCDR
IENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQIRRVSPGD
TSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINRLLIQAVALTMERQ
DEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVTSMDGLKNALKGYK
IGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIALTRLRAARAVAYAS
CIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKCRVHQAKAAGKGPI
GHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRKNNYNAFSRRGLND
EEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHRVFYK
SKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNERINFEAPPTL
WSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIHRAGEFTLFRFSKK
IRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGML
LTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCAVQASEGETT
LEGGNKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGGRDPRVSGGP
SLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSDACQSLDK
TTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYTAALKDELVKPE
KVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMNSIEDGPLIYAE
HSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSEMDVGD
YVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIV
STDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAAGFQGR
LDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKFYRKISSKVI
QEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..1150
/gene="ORF1"
/product="p48"
mat_peptide 1151..2239
/gene="ORF1"
/product="NTPase"
mat_peptide 2240..2836
/gene="ORF1"
/product="p22"
mat_peptide 2837..3250
/gene="ORF1"
/product="VPg"
mat_peptide 3251..3793
/gene="ORF1"
/product="Pro"
mat_peptide 3794..5317
/gene="ORF1"
/product="RdRp"
gene 5304..6926
/gene="ORF2"
CDS 5304..6926
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCA41820.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6926..7555
/gene="ORF3"
CDS 6926..7555
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCA41821.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSTSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 caacaacgct aacaacacta gtgctacatc tcgatttttg tcgagattta agggtttagg
61 tggtggcgcg agccccccta accccataaa gatcaaaagc acagaaatgg ccttgggttt
121 gattggtaag gcaacccaag aggcagtagg tgccagtgac ctaccgccta aacagcaaag
181 agaccggccc cccagaaccc aagaggaagt tcagtacggc atggggtgga ctgaaaggcc
241 cgtggaccag aatgttaagt catgggagga acttgacacc tccaccaagg aagagatttt
301 ggacagccac aaagaatggt tcgatgccgg cggtttgggc ccgtgcacta tgccctcaac
361 ttgtgaacag gctaaagatg atagcccacc tggtgagcaa gtcagatggt cagcgcgtga
421 tggagtcaac cttggagtga accgtctcac gacggtgagt ggccccgagt ggaacctctg
481 ccctctaccc cccattgacc taaggaatat ggaaccagct agtgaaccca ccattggaga
541 catgatagag ttttatgaag gccatatcta ccactactcc atatacattg ggcaaggaaa
601 gacagttggt gtgcattccc cacaggcagc attctcagtg gctagagtaa ccatccaacc
661 tatagctgct tggtggaggg tttgttatat accccagccc aaacatagac tgagctatga
721 ccaacttagg gaattggaaa atgaaccttg gccatatgca gctatcacca acaattgttt
781 tgagttttgc tgtcaagtta tgaaccttga ggacacatgg ttgcagaggc gactaataac
841 atcaggtaga ttccaccacc cttcccagtc ttggtcacaa cagacccctg aatttcagca
901 ggacagtaaa ctggaactgg ttagggatgc catattggcc gcggtgaatg gccttgtttc
961 acaacccttc aagaatttct tgggcaagct caagcctctt aatgtattaa acatcctatc
1021 taactgtgac tggactttta tgggggtggt agagatggtt atactacttc ttgagctctt
1081 tggtgtgttc tggaacccgc ccgatgtgtc taattttata gcatctctcc tccctgactt
1141 ccacctccag ggaccagaag acctggcccg ggatttggtg ccagtcattc ttggtggcat
1201 aggactagcc attggattta ccagagataa agtcaccaag gtcatgaaga gtgctgtgga
1261 tggactccga gccgctacac agctggggca atacgggttg gaaatattct cactcctcaa
1321 gaagtatttc tttggtgggg atcagactga acgaaccctc aaaggcattg aagcagcagt
1381 catagatatg gaggttttgt cctctacatc agtgacacaa ttggtgagag ataagcaggc
1441 agctaaagct tacatgaaca tcctggataa tgaagaggaa aaagctagaa aactctctgc
1501 taagaatgct gacccccatg taatatcctc aacaaatgcc ctaatatcac gtatagccat
1561 ggcgcgatcc gctctggcta aggctcaagc tgagatgacc agccgaatga ggccagttgt
1621 catcatgatg tgtggacctc ctggaattgg taagactaaa gcagcggaac acttggcaaa
1681 acgcctagct aatgagatca ggcctggcgg caaagtggga ctggtaccac gtgaggctgt
1741 tgaccactgg gatggctacc atggtgagga agtgatgcta tgggatgact atggtatgac
1801 aaagatacaa gatgactgca acaagctcca ggctattgct gactctgccc cactcactct
1861 caattgtgat aggattgaaa ataaagggat gcagtttgtg tcagatgcaa tagtcatcac
1921 caccaacgct ccagggcctg cccctgtgga ctttgtcaac cttggccctg tgtgtagacg
1981 agttgacttc ctggtttact gttccgcccc agaggtagag cagataagga gagtcagccc
2041 tggagacacg tcggcactta aagactgctt caagtcagat ttctcccacc tgaagatgga
2101 gttagctcct caaggggggt ttgacaacca ggggaacaca ccattcggca agggtgtcat
2161 gaaaccaaca accatcaaca ggctcctcat acaagctgtg gctctcacca tggagagaca
2221 ggatgagttc cgtctccaag ggaagatgta tgattttgat gatgacaggg tgtcagcctt
2281 caccaccatg gcacgcgata atggattggg tatcctgagc atggcgagcc taggtaagaa
2341 gctgcgcggt gtcacatcga tggatggtct gaagaatgct ttgaaagggt ataaaattgg
2401 tgcgtgcaca atcaagtggc aggccaaggt gtattcacta gagtcagatg gcaacagtgt
2461 taacatcagg gaggagaaga atgtcttaac tcaacaacag cagtcggtgt gcgctgcctc
2521 tattgcactc acccgtctgc gggccgcacg cgcggtggcg tatgcgtcat gcattcaatc
2581 agccataacc tccatactac aaattgctgc ctctgcccta gtggtcaaca gggccgtgaa
2641 aagaatgttt ggcacacgca ctgctgcttt gtctctagag ggccccccca aagaacacaa
2701 atgcagagtc caccaggcta aagccgcagg aaaagggccc attggccatg atgacatggt
2761 tgataaatat ggtctatgtg agactgagga ggacgaagaa gtagtccaca ctgagatacc
2821 atctgccacc atggaaggta agaacaaagg aaagaacaag aaagggcgcg gccgaaagaa
2881 caactacaat gccttttccc gtagagggct caatgacgaa gagtacgagg agtacaagaa
2941 aatacgggaa gagaagggtg gaaattacag cattcaggag tacctagagg atagacaaag
3001 gtatgaagag gagcttgctg aggttcaagc aggtggagat ggaggaatcg gtgaaactga
3061 aatggaaatc cgccatagag tgttctacaa gtctaagagc aagaagcacc accaggaaga
3121 acgacgccaa ctggggttag tcacaggttc tgacatccgg aaaagaaaac caattgactg
3181 gaccccccct aagtcagcat gggcagatga tgagcgtgaa gtggactaca atgagaggat
3241 caactttgag gcgcccccca ctttgtggag ccgggtcaca aagttcggat ctgggtgggg
3301 cttctgggtc agtcccacag tcttcataac cacaacgcac gttataccaa ccagtgcaaa
3361 agagttcttt ggtgaacccc ttgccagcat agccatccac agagccggag aattcaccct
3421 cttcaggttc tctaagaaaa tcaggcccga tctcacgggt atgattcttg aggaaggctg
3481 cccagagggt acggtgtgct cagtattaat aaaaagggac tccggtgagc tactaccact
3541 agctgtaaga atgggcgcaa tagcatcaat gcgcatacag ggtcgccttg tccatggcca
3601 gtctggtatg ttgctcactg gggcgaatgc taagggcatg gacctcggaa ctattccagg
3661 ggattgtgga gctccctatg tctataagag agcaaatgac tgggtggttt gtggtgtgca
3721 cgctgctgct actaagtcag gcaacacggt agtgtgcgcc gttcaggcta gtgaagggga
3781 aacaacactt gagggaggta acaaaggtca ctacgccgga catgagataa tcaagcatgg
3841 atgtgggcca gccctgtcaa ccaaaacaaa gttctggaaa tcgtcccctg aaccactacc
3901 ccctggagtc tatgaacctg catacctcgg tggccgggat ccaagagtga gtggtggccc
3961 ctcgctccaa caggtgttac gggatcagtt aaagccattt gctgagccac gggggcgtat
4021 gccggaacca ggtctcctgg aggccgcagt tgagactgtg acctcatcac tggagcaggt
4081 tatggatacc ccagtgccgt ggagttacag cgatgcatgc caatccctag ataaaactac
4141 tagttctggt ttcccccatc acaagaagaa gaatgatgat tggaacggca ccgccttcat
4201 tagagagtta ggagagcagg cagcgcacgc caataatatg tacgaacaag ctaagagcat
4261 gaagcccatg tacacggcgg cgcttaagga tgaattagtg aaaccagaaa aagtgtacca
4321 aaaagtgaag aagcgcttgc tttggggggc agatctagga acagtgatcc gggccgcacg
4381 ggcctttggc ccattctgtg atgctataaa gtcccacaca attaaactac ctatcaaagt
4441 tggaatgaat tcaatcgagg atgggccatt aatttatgca gagcactcaa aatataaata
4501 tcactttgat gcagactata cggcttggga ctcaacacaa aataggcaaa ttatgactga
4561 atcattctca atcatgtgtc ggctaactgc ttctccagaa ttggcctcag tggtggcaca
4621 agatctgctt gcaccctcag aaatggacgt tggtgactac gtcataagag tgaaggaagg
4681 cctcccatct ggctttccat gcacatcaca ggtcaatagc ataaaccatt ggttgataac
4741 tttgtgtgcc ctctctgagg tgactggcct gtcaccagat gttatccagt ccatgtcata
4801 cttttctttc tatggtgatg atgaaatagt ttccactgac atagaatttg acccagcaaa
4861 gctgacacaa gtccttaaag agtatggcct caaacccacc cgccctgaca agagtgaagg
4921 tccaataatt gtgaggaaga gtgtggatgg cctggtcttc ttacgtcgca ccatttcccg
4981 cgacgccgcg gggttccagg ggcgactgga ccgagcatcc attgaaaggc agatctactg
5041 gaccagaggg cccaatcact cagacccctt tgaaaccttg gtgccccacc agcaaagaaa
5101 aatccagctg atatcactgt taggtgaagc ctcattgcat ggtgaaaaat tctacaggaa
5161 gatctcaagc aaagtcatcc aagagattaa gacagggggt cttgaaatgt atgtgccagg
5221 gtggcaagcc atgttccgct ggatgcggtt ccacgacctt ggcctgtgga caggagatcg
5281 caatctcctg cccgaattcg taaatgatga tggcgtctaa ggacgcccca acatcccctg
5341 atggcgccag tggcgccggc cagctggtac cggaggctaa tacagctgag caaatttcaa
5401 tggaccctgt cgcgggtgct tcaacagcag tcgcgacagc tgggcaagtt aatatgattg
5461 acccatggat tttcaataac tttgtccagg cacctcaagg agaattcact atttccccta
5521 ataatacccc cggtgacatt ttgtttgatt tacaactagg accccacctt aatccatttc
5581 tagcccatct ctcacagatg tacaatggtt gggtcggcaa tatgcgtgtg cgcatactgt
5641 tggccgggaa tgccttcaca gctggaaaga taatcatttg ctgtgtcccc cctggttttg
5701 atgctagaat actcacaata gctcaagcaa ctctctttcc acacttaatt gccgatgtaa
5761 ggacccttga gcctgtggaa cttcccttgg aggatgtgcg caatgttctc ttccacaaca
5821 gtagccaacc gcagccaaca atgcggctgg ttgctatgtt gtacactccc ctccgcactg
5881 gtggtggttc cggaggcact gatgcctttg tggtggcggg tagggtactt acgtgccccg
5941 cccccgactt tagttttctg tttctggtcc ccccttccgt tgaacaaaag accagagttt
6001 tcagtgtccc caatataccc ctgaaggatc tctcaaattc ccgtgtccct gtgcctgtac
6061 agggcatgtt tatgtctcca gatgttaatc agtcagtcca gtttcagaat ggacgctgcc
6121 aaattgatgg ccaactccaa ggcaccactc cagtctcgct cagccaactc tgcaagatta
6181 ggggtaaaac ttctagtaat gctagggtgc tcaacttaag tgaggtagat ggcacaccct
6241 tcatcccact tgaatcacca gcgccagttg gttttcccga cttgggaggt tgtgactggc
6301 atgtaaattt cactttccag gctcaagatc aggatccatc tcaaagtgta acctttgcaa
6361 ctaatgatgc cagctttgtc ccctatctag gtagtatctc tcctcacaat gggggagatt
6421 ttcatgcagg tgacatcata ggtagccttg gttggatttc agccccgtct gacaattcac
6481 aactcaatgt ttggacaata ccaaagtatg gatctagtct cccagatgtc actcatcttg
6541 cccctgctgt gttcccccca ggctttggtg aggtgatctt gtacttctac tctaccttcc
6601 caggttctgg acaatccagc caacttcaag tcccatgttt gttgcctcag gagttcatta
6661 cccacttctg taacgaacag gctcccatcg ctggggaggc tgccctcctc cactacgtgg
6721 accctgatac ggggcgaaac ttgggagaat ttaaacttta ccctgatggg tttatgacct
6781 gtgtccccaa tagtgttagt agtggccctc aaacccttcc tatcaatgga gtctttgttt
6841 ttgtttcatg ggtgtctaga ttctatcaac tcaagcctgt gggaacggcc tcagcggcta
6901 gaaggcttgg attgcggcgc atataatggc ccaagctgtc atcggtgcca tagccgcatc
6961 tgccgctggt agtatactag gggcaggcat acaggctggt gctgaggctg gtctccaggc
7021 tcaacggtat cagcaggatc tgcagttgca acaaaattcc ttcaagcatg ataaggaaat
7081 gttaggctac caagttcagg ctagtaatgc tcttttagct aagaatctta acactagata
7141 tgcccttctg caggcagggg gcctatctag tgctgatgct gctcgggcag tggctggtgc
7201 tcctgtcacc cgtatagtgg actggaatgg cacgcgcatt gcagcgccca cttcaagcac
7261 cactacactc agatctggtg gttttatggc tgtccctata ccattgtctt caaagaccaa
7321 gcaaccagtg atgtctgggc aggataaccc aaattatgct gcttcttcta tctctagaac
7381 tgcttcatgg gtgcaatctc aaaattctat gaggtctgtt tctccttttc acagtgatgc
7441 tttgagaacc gtttgggtta caccacccgg ttcaacatca acttcatctg tgcaatctag
7501 tttctatggt gtttttaata cagatagatt gcctctgttc gcaaacagaa ggtaataaaa
7561 ttttgtaata ggatgccagt gggcaccata ttcagatttg attttaattg gattgtttag
7621 atcggaatag cgtcgtttgt t
//