Typing tool
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Typing tool
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Complete norovirus genomes
| MK789655 | GI.6 | |
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| GI.P11 |
ORF1: 1..5347
ORF2: 5331..6953
ORF3: 6953..7582
LOCUS MK789655 7679 bp RNA linear VRL 01-NOV-2019
DEFINITION Norovirus GI isolate G19_018 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MK789655
VERSION MK789655.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7679)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.F.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7679)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7679
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="G19_018"
/isolation_source="sewage"
/db_xref="taxon:122928"
/country="France: Nantes"
/collection_date="30-Mar-2014"
/note="genotype: GI.6-GI.Pb"
gene <1..5347
/gene="ORF1"
CDS <1..5347
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QCA41816.1"
/translation="VVATNVASNNNANNTSATSRFLSRFKGLGGGASPPNPIKIKSTE
MALGLIGKTTQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWEELDT
STKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNLGVNRLTT
VSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQA
AFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFCCQVM
NLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKN
FLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQ
GPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLLKK
YFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARKLS
AKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEH
LAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIADS
APLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVE
QIRRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINRLLIQ
AVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVTSMEG
LKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIALTRLR
AARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKCRVHQ
AKAAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRKNNYN
AFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEM
EIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNER
INFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIHRAGE
FTLFRFAKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGR
LVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCA
VQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGG
RDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSY
SDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYTAA
LKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMNSI
EDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLL
APSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYF
SFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTIS
RDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKF
YRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..1177
/gene="ORF1"
/product="p48"
mat_peptide 1178..2266
/gene="ORF1"
/product="NTPase"
mat_peptide 2267..2863
/gene="ORF1"
/product="p22"
mat_peptide 2864..3277
/gene="ORF1"
/product="VPg"
mat_peptide 3278..3820
/gene="ORF1"
/product="Pro"
mat_peptide 3821..5344
/gene="ORF1"
/product="RdRp"
gene 5331..6953
/gene="ORF2"
CDS 5331..6953
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCA41818.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFYAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6953..7582
/gene="ORF3"
CDS 6953..7582
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCA41817.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 cgtcgttgcg actaatgttg caagcaataa caacgctaac aacactagtg ctacatctcg
61 atttttgtcg agatttaagg gtttaggtgg tggcgcgagc ccccctaacc ccataaagat
121 caaaagcaca gaaatggcct tgggtttgat tggcaagaca acccaagagg cagtaggggc
181 cagtgaccta ccgcctaaac agcaaagaga ccgacccccc agaacccaag aggaagttca
241 gtacggcatg ggatggactg aaaggcccgt ggaccagaat gttaagtcat gggaggaact
301 tgacacctcc accaaggaag agattttgga cagccacaaa gaatggttcg atgccggcgg
361 tttgggccca tgcactatgc cctcaacttg tgaacaggct aaagatgata gcccacctgg
421 tgagcaagtc agatggtcag cgcgtgatgg agtcaacctt ggagtgaacc gtctcacgac
481 ggtgagtggc cctgagtgga acctctgccc tctacccccc attgacctaa ggaatatgga
541 accagctagt gaacccacca ttggagacat gatagagttt tatgaaggtc acatctacca
601 ctactccata tatattgggc aaggaaaaac agttggtgtg cattccccac aggcagcatt
661 ctcagtggct agagtaacca tccaacctat agctgcttgg tggagggttt gttatatacc
721 ccagcccaaa catagactga gttatgacca gcttagggaa ttggaaaatg aaccttggcc
781 atacgcagct atcaccaaca attgttttga gttttgctgt caagttatga accttgagga
841 cacatggttg cagaggcggc taataacatc aggtagattc caccaccctt cccagtcttg
901 gtcacaacag acccctgaat ttcagcagga cagtaaactg gaactggtta gggatgctat
961 attggccgcg gtgaatggcc ttgtctcaca acccttcaag aatttcttgg gcaagctcaa
1021 gcctcttaat gtattaaaca tcctatctaa ctgtgactgg acttttatgg gggtggtaga
1081 gatggttata ctactccttg aactctttgg cgtgttctgg aacccgcccg atgtgtctaa
1141 ttttatagca tctctcctcc ctgacttcca cctccagggg ccagaagacc tggcccggga
1201 tttggtgcca gtcattcttg gtggcatagg actagccatt ggatttacca gagacaaagt
1261 caccaaggtc atgaagagtg ctgtggatgg actccgggcc gctacacagc tggggcaata
1321 cgggttggaa atattctcac tcctcaagaa gtatttcttt ggtggggatc agactgaacg
1381 aaccctcaaa ggcattgaag cagcagtcat agatatggag gttctgtcct ctacatcagt
1441 gacacaattg gtgagagaca agcaggcagc taaagcttac atgaacatcc tggataatga
1501 agaggaaaaa gctagaaaac tctctgctaa gaatgctgac ccccatgtaa tatcctcaac
1561 aaatgcccta atatcacgta tagccatggc gcgatccgct ctggctaagg ctcaagctga
1621 gatgaccagc cgaatgaggc cagttgtcat catgatgtgt ggacctcctg gaattgggaa
1681 gactaaagca gcggaacact tggcaaaacg cctagctaat gagatcaggc ctggcggcaa
1741 agtgggactg gtaccacgtg aagctgttga ccactgggat ggctaccatg gtgaggaagt
1801 gatgctatgg gatgactatg gtatgacaaa gatacaagat gactgcaaca agctccaggc
1861 tattgctgac tctgccccac tcactctcaa ttgtgatagg attgaaaata aagggatgca
1921 gtttgtgtca gatgcaatag tcatcaccac caacgctcca gggcctgccc ctgtggactt
1981 tgtcaacctt ggccctgtgt gtagacgggt tgacttcctg gtctactgtt ccgccccaga
2041 ggtagagcag ataaggagag tcagccctgg agacacgtcg gcacttaaag actgcttcaa
2101 gtcagacttc tcccacctga agatggagtt agctcctcaa ggggggtttg acaaccaggg
2161 gaacacacca ttcggcaagg gtgtcatgaa accaacaacc atcaacaggc tcctcataca
2221 agctgtggct ctcaccatgg agagacagga tgagttccgt ctccaaggga agatgtatga
2281 ttttgatgat gatagggtgt cagcctttac caccatggca cgcgataatg gattgggcat
2341 cctgagcatg gcgagcctag gtaagaagct gcgcggtgtc acatcgatgg aaggtctgaa
2401 gaatgctctg aaagggtata aaattggtgc gtgcacaatt aagtggcagg ccaaggtgta
2461 ttcactagag tcagatggca acagtgttaa catcagggag gagaagaacg tcttaactca
2521 acaacagcag tcggtgtgcg ctgcctctat tgcactcacc cgtctgcggg ccgcacgcgc
2581 ggtggcgtat gcgtcatgca ttcaatcagc cataacctcc atactacaaa ttgctgcctc
2641 tgccctagtg gtcaacaggg ccgtgaaaag aatgtttggc acacgcactg ctgctttgtc
2701 tctagagggc ccccccaaag aacacaaatg cagagtccac caggctaaag ccgcaggaaa
2761 agggcccatt ggccatgatg acatggttga taaatatggt ctatgtgaga ctgaggagga
2821 tgaagaagta gtccacactg agataccatc tgccaccatg gaaggtaaga acaaaggaaa
2881 gaacaagaaa gggcgcggcc gaaagaacaa ctacaacgcc ttttcccgta gagggctcaa
2941 tgacgaagag tatgaggagt acaagaaaat acgggaagag aagggtggaa attacagcat
3001 tcaggagtac ctagaggata gacaaaggta tgaagaggag cttgctgagg ttcaagcagg
3061 tggtgatgga ggaatcggtg aaactgaaat ggaaatccgc catagagtgt tctacaagtc
3121 taagagcaag aagcaccacc aggaagaacg acgccaactg ggattagtca caggttctga
3181 catccggaaa agaaaaccaa ttgactggac cccccctaag tcagcatggg cagatgatga
3241 gcgtgaagtg gactacaatg agaggatcaa ctttgaggcg ccccccactt tgtggagccg
3301 ggtcacaaag tttggatctg ggtggggctt ctgggtcagt cccacagtct tcataaccac
3361 aacgcacgtt ataccaacca gtgcaaaaga gttctttggt gaaccccttg ccagcatagc
3421 catccacaga gccggagaat tcaccctctt caggttcgct aagaaaatca ggcccgatct
3481 cacgggtatg attcttgagg aaggttgccc agagggtacg gtgtgctcag tattaataaa
3541 aagggactcc ggtgagctac taccactagc tgtaagaatg ggcgcaatag catcaatgcg
3601 catacagggt cgccttgtcc atggccagtc tggtatgttg ctcactgggg cgaatgctaa
3661 gggcatggac ctcggaacta ttccagggga ttgtggagct ccctatgtct ataagagagc
3721 aaatgactgg gtggtttgtg gtgtgcacgc tgctgccact aaatcaggca acacggtagt
3781 gtgtgccgtc caggctagtg aaggggaaac cacacttgag gggggtgaca aaggtcacta
3841 tgccggacat gagataatca agcatggatg tgggccagcc ctgtcaacca aaacaaagtt
3901 ctggaaatcg tcccctgaac cactaccccc tggagtctat gaacctgcat acctcggtgg
3961 ccgggatcca agagtaagtg gtggcccctc gctccaacag gtattacggg atcagttaaa
4021 gccatttgct gagccacggg ggcgtatgcc ggaaccaggt ctcctggagg ccgcagttga
4081 gactgtgacc tcatcactgg agcaggttat ggatacccca gtgccgtgga gttacagtga
4141 tgcatgtcag tccctagata aaactactag ttctggtttc ccccaccaca agaagaagaa
4201 tgatgattgg aacggcaccg ccttcattag agagttggga gagcaggcag cgcacgccaa
4261 taatatgtac gaacaagcta agagcatgaa gcccatgtac acggcggcgc ttaaggatga
4321 attagtgaaa ccagaaaaag tgtaccaaaa agtgaagaag cgcttgcttt ggggggcaga
4381 tctaggaaca gtgatccggg ccgcacgggc ctttggccca ttctgtgatg ccataaagtc
4441 ccacacaatt aaattaccta tcaaagttgg aatgaattca atcgaggatg ggccattaat
4501 ttatgcagag cattcaaaat ataaatatca ctttgatgca gactatacgg cttgggactc
4561 aacacaaaat aggcaaatta tgactgaatc attctcaatc atgtgtcggc taactgcttc
4621 tccagaattg gcctcagtgg tggcacaaga tctgcttgca ccctcagaaa tggacgttgg
4681 tgactacgtc ataagagtga aggaaggcct cccatccggc tttccatgca catcacaggt
4741 caatagcata aaccattggt tgataacttt gtgcgccctc tctgaggtga ctggcctgtc
4801 accagatgtt atccagtcca tgtcatactt ttctttctat ggtgatgatg aaatagtttc
4861 tactgacata gaatttgacc cagcaaagct aacacaagtc cttaaagagt atggcctcaa
4921 acccacccgc cctgacaaga gtgaaggtcc aataattgtg aggaagagtg tggatggcct
4981 ggtcttctta cgtcgcacca tttcccgcga cgccgcgggg ttccaggggc gactggaccg
5041 agcatccatt gaaaggcaga tctactggac cagagggccc aatcactcag acccctttga
5101 aaccttggtg ccccaccagc aaagaaaaat ccagctgata tcactgttag gtgaggcctc
5161 attgcatggt gaaaaattct acaggaagat ctcaagcaaa gtcatccaag agattaagac
5221 agggggcctt gaaatgtatg tgccagggtg gcaagccatg ttccgctgga tgcggttcca
5281 cgaccttggc ctgtggacag gagatcgcaa tcttctgccc gaattcgtaa atgatgatgg
5341 cgtctaagga cgccccaaca tcccctgatg gcgccagtgg cgccggccag ctggtaccgg
5401 aggctaatac agctgagcaa atttcaatgg accctgttgc gggtgcttca acagcagtcg
5461 cgacggctgg gcaagttaat atgattgacc catggatttt taataacttt gtccaggcac
5521 ctcaaggaga attcactatt tcccctaata atacccccgg tgacattttg tttgatttac
5581 aactaggacc ccaccttaat ccatttctag cccatctctc acagatgtac aatggttggg
5641 tcggcaatat gcgtgtgcgc atactgttgg ccgggaatgc cttcacagct ggaaagataa
5701 tcatttgctg tgtcccccct ggttttgatg ctagaatact cacaatagct caagcaactc
5761 tcttcccaca cttaattgct gatgtaagga cccttgagcc tgtggagctt cctttggagg
5821 atgtgcgcaa tgttctcttc cacaacagta gccaaccgca gccaacaatg cggctggttg
5881 ctatgttgta cactcccctc cgcactggtg gtggttccgg aggcactgat gcctttgtgg
5941 tggcgggtag ggtgcttacg tgccccgccc ccgactttag ttttctgttt cttgtccccc
6001 cttccgttga acaaaagacc agagttttca gtgtccccaa tatacccctg aaggatctct
6061 caaattcccg tgtccctgtg cctgtacagg gcatgtttat gtccccagat gttaatcagt
6121 cagtccagtt tcagaatgga cgctgccaaa ttgatggcca actccaaggc accactccag
6181 tctcgctcag ccaactctgc aagattaggg gtaaaacttc tagtaatgct agggtgctca
6241 acttaagtga ggtagatggc acacccttca tcccacttga atcaccagcg ccagttggtt
6301 ttcccgactt gggaggttgt gactggcatg taaacttcac tttccaggct caaaatcagg
6361 acccgtctca aagtgtaacc tttgcaacta atgatgccag ctttgtcccc tatctaggta
6421 gtatctctcc tcacaatggg ggagattttt atgcaggtga catcataggt agccttggtt
6481 ggatttcagc cccgtctgat aattcacaac ttaatgtttg gacaatacca aagtatggat
6541 ctagtctccc agatgtcact catcttgccc ctgctgtgtt ccccccaggc tttggggagg
6601 tgatcttgta cttctactct accttcccag gttctggaca atccagccaa cttcaagtcc
6661 catgtttgtt gcctcaggag ttcatcaccc acttctgtaa cgaacaggct cccatcgctg
6721 gggaggccgc cctcctccac tacgtggacc ctgatacggg gcgaaacttg ggggaattta
6781 aactttaccc tgatgggttt atgacctgtg tccccaatag tgttagtagt ggccctcaaa
6841 cccttcctat caatggagtc tttgtctttg tttcatgggt atctagattc tatcaactca
6901 agcctgtggg aacggcctca gcggctagaa ggcttggatt gcggcgcata taatggccca
6961 agctgtcatc ggtgccatag ccgcatctgc cgctggtagc atactagggg caggtataca
7021 ggctggtgct gaggctggtc tccaggctca acggtatcag caggatctgc agttgcaaca
7081 aaattcattc aagcatgata aggaaatgtt aggctaccaa gttcaggcta gtaatgctct
7141 tttagctaag aatcttaaca ctagatatgc tcttctgcag gcagggggcc tatctagtgc
7201 tgatgctgct cgggcagtgg ctggtgctcc tgtcacccgt atagtggact ggaatggcac
7261 gcgcattgca gcgcccacct caagcaccac tacacttaga tctggtggtt ttatggctgt
7321 ccctatacca ttgtcttcaa agaccaagca accagtgatg tctgggcagg ataatccaaa
7381 ttatgctgct tcttctatct ctagaactgc ttcatgggtg caatctcaaa attctatgag
7441 gtctgtttct ccctttcaca gtgatgctct gagaaccgta tgggttacac cacccggttc
7501 atcatcaact tcatctgtgc aatctagttt ctatggtgtt tttaatacag atagattgcc
7561 tctgttcgca aacagaaggt aatgaaattt tgtaatagga tgccagtggg caccatattc
7621 agatttgatt tttaattgga ttgttttaat taaaatttgg cttaattggt gttaaaaaa
//