Typing tool
|
Complete norovirus genomes
MK789431 | GII.17 | ||
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GII.P17 |
ORF1: 1..5097 ORF2: 5078..6700 ORF3: 6700..7479LOCUS MK789431 7533 bp RNA linear VRL 20-APR-2019 DEFINITION Norovirus GII isolate 3351 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK789431 VERSION MK789431.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7533) AUTHORS Santiso-Bellon,C., Fuentes-Trillo,A., Vila-Vicent,S., Monzo,C., da Silva Ribeiro de Andrade,J., Gozalbo Rovira,R., Buesa,J., Chaves,F.J. and Rodriguez-Diaz,J. TITLE Nearly Complete Genome Sequences of Human Norovirus from Valencia (Spain) JOURNAL Unpublished REFERENCE 2 (bases 1 to 7533) AUTHORS Santiso-Bellon,C., Fuentes-Trillo,A., Vila-Vicent,S., Monzo,C., da Silva Ribeiro de Andrade,J., Gozalbo Rovira,R., Buesa,J., Chaves,F.J. and Rodriguez-Diaz,J. TITLE Direct Submission JOURNAL Submitted (12-APR-2019) Microbiology and Ecology, University of Valencia, Avenida Blasco Ibanez 17, Valencia, Valencia 46010, Spain COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. v3.11.1; MEGAHIT with CD-HIT v. v1.1.3 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7533 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="3351" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="Spain: Valencia" /collection_date="Nov-2015" /note="genotype: GII.P17_GII.17" gene <1..5097 /gene="ORF1" CDS <1..5097 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QCA41761.1" /translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDA QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD ELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC GCPYLYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGHPHHVRKNDYWS GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..987 /gene="ORF1" /product="p48" mat_peptide 988..2085 /gene="ORF1" /product="NTPase" mat_peptide 2086..2622 /gene="ORF1" /product="p22" mat_peptide 2623..3021 /gene="ORF1" /product="VPg" mat_peptide 3022..3564 /gene="ORF1" /product="Pro" mat_peptide 3565..5094 /gene="ORF1" /product="RdRp" gene 5078..6700 /gene="ORF2" CDS 5078..6700 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QCA41762.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6700..7479 /gene="ORF3" CDS 6700..7479 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QCA41763.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHITPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa ggaaaaatct 61 tcaagtgaca gcttgtttgc taacatgtct gtcactttta agaaagccct cggggcgcgg 121 tctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag gccaccgaca 181 ccggaattgg tgaagagaat acctccaccc ccacccaatg gcgaggatga accagggata 241 gtgtacaagg tgggagaggg tgtgtctggg ctgcccgacc taacaactgt ggtacaacct 301 gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt cggcgaagct 361 aaagaaccgc tgcctggctc cattctggaa atgtgggatg gtgagatcta ccactacggg 421 ctgtatgttg agcgggggca tgtgctcgga gtacacaaac cacctgctgc aataagcctt 481 gccaaaattg aaataacacc gctgtctctc tactggagag tggtctacac tccccagtat 541 ttgatagatc caggaactct taagaacttg agtggagaga ctttcccata cacggccttt 601 gacaacaact gttatgcctt ctgttgttgg gtcctagacc tcaacgactc ctggcttagc 661 aggagaatga tccaaagaac aactggattc ttcaaacctt atcaggattg gaacagaaaa 721 cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt cctatgcgct 781 ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag accactgaac 841 attcttaata tactggcaac ctgcgattgg acttttgcag gcatagtgga atccttgatc 901 cttcttgctg aactctttgg ggtgttctgg acacccccag atgtgtctgc gatgattgct 961 cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga acttgtgccc 1021 gtggtgatgg gaggaatagg tttggtgtta ggattcacca aagaaaagat cggcaagatg 1081 ctttcatcag ctgcgaccac acttagggcc tgcaaggatc taggatctta tggattggag 1141 atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa cgaactagcc 1201 atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagaaaa caatcacatg 1261 accacccttc tcaaggataa agacagcctg gccacataca tgaggactct tgacttggaa 1321 gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt gggtacaata 1381 aacgcattat tggctaggat agcagccgcc aggtcactgg tccacaaggc taaggaggag 1441 ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg tataggaaag 1501 acccatctgg ccagagagct agccaagaaa gttgcgtcaa cactgtcagg cgaccaaagg 1561 attggactgg tacctagaaa tggcgtcgac cattgggacg cctacaaggg agaaagggtg 1621 gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag gctccaagaa 1681 ttggctgaca cctgtcctct gaccctaaat tgtgatagga ttgaaaacaa aggaaaagtg 1741 ttcgacagtg atgctataat cataacaacc aaccttgcaa acccagcacc actagactat 1801 gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga cgcacctgac 1861 attgagaagg ctaagcgtga cttccctggc caaccagata tgtggaaaga ccatttcaga 1921 ccagacttct cacacattaa acttcagctg gcaccacagg gaggttttga caaaaatggc 1981 aacaccccac atggtaaagg tgtggtgaag tccctgacga ttggttctct gatcgccagg 2041 gcctccggct tgctccacga gagaatggat gaattcgagc tccaaggctc tgacctgcca 2101 accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc tgaaaacaaa 2161 tatggtctta tggacacact gagggtcggc aaccaactga aaagtgttaa gaccctggat 2221 gagctgaagc aggccataaa gaacatcagt atcaagaagt gtcagatagt gtataatgga 2281 tgcacctata ccatggaatc tgatgggagg ggcaaggttg tggttgaaaa ggtacaaaac 2341 gcaacagttc aaaccaacaa tgaacttgta ggggcgctcc accacctgag atctgcaagg 2401 ataagatact atgttaaatg tttccaagaa gccatttact ctctactcca aattgctggt 2461 gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tatcaaacct ctggtcgaag 2521 ccacccatcg aggagggtga tgagcctgaa gacagaggag gatgccccaa gcccagggat 2581 gaagatgacc tcactattga ctctagagac attaaagtgg aagggaagaa gggcaagaac 2641 aagtctggcc ggggcaagaa acacacagcc ttctcttcca agggcctcag tgatgaagag 2701 tacgatgagt acaagagaat cagagaggag aggaatggca aatactcaat agaggaatac 2761 ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac tgaggaggac 2821 ttctgtgagg aggaggagat caaaatccgc cagagaatct tccgacccac caggaagcag 2881 cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag aaagaggaat 2941 ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag cgtggattac 3001 aatgagagga tagattttga ggctcccccg agtgtctggt ctaggatagt caactttggc 3061 acaggctggg gattctgggt ttctccaagc ctctttataa cttcaacaca cgtcatacca 3121 aaaggaatca ctgaggcctt cggagtgccc ataaaccaaa tccaaattca caaatctgga 3181 gaattttgcc gcttgcggtt tccaaagcca attagaccag acgtgagtgg gatgatcttg 3241 gaagagggcg cccctgaagg cactgttgtg tctattctca tcaaaaggac aacaggggag 3301 ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca aggtagaacg 3361 gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat ggatctaggc 3421 acaacgccag gtgactgcgg atgtccatac ttatacaaaa ggggcaatga ccttgtggtc 3481 attggggtgc acactgcagc agctcgtgga ggcaacacgg tcatatgtgc cacacaggga 3541 agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg tggagccccc 3601 attttgggac ctggcaatgc accaaaattg agcacaaaga caaaattctg gagatcctct 3661 aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag agacccgcgc 3721 gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc ttttacagag 3781 cccagaggga agccaccaaa cccaaatgtc ttagagtcag caaagaagac tatcatcaat 3841 gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc ttgtgcatcc 3901 ctcgacaaga caacctccag tggacacccg caccacgtcc ggaagaatga ctattggagt 3961 ggtgaatcct tcacaggaaa acttgcagat caggcttcaa aagcaaatct catgtatgag 4021 gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct cgtgaaaact 4081 gataaaattt atggaaaaat caagaaaaga ctcctgtggg gttctgacct ctccacaatg 4141 attcgatgcg ccagagcatt tggtggtctc atggatgaac tcaaagcaaa ttgtattaca 4201 ctccctatca gagttggtat gaatatgaat gaagatggtc ccataatatt tgagaaacac 4261 tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac acaacagcgg 4321 gcagtgctgg aagcggcact tgaaatcatg gtaagatttt ctgctgagcc acagctggca 4381 caaatagtgg cagaggacct gctgtcacca agtgtggttg atgtgggcga tttcaaaatc 4441 gctatcaatg aaggcctacc atctggcgtg ccttgcacct cacaatggaa ttctattgcc 4501 cactggttac ttaccttgtg tgccctttct gaagtgacag gattaggtcc tgacatcata 4561 caagctaact ccatgtactc tttctatggt gatgatgaga ttgtgagtac agacataaaa 4621 ttggacccag agaaattgac cgcaaagctc aaagaatatg gccttaaacc cactcggccc 4681 gacaaaactg aggggccgtt ggtgattagt gaggacctga atgggttgac tttcctccgc 4741 cgaacagtca cccgtgatcc agcaggttgg tttggaaagt tggaccaaaa ctccatcctc 4801 aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac catgatacca 4861 cacgcacaaa gacctgtgca gctcatggca ctactaggag aatcctccct acatggaccc 4921 tcattttaca gcaaggttag caaattagtt atatctgaac ttaaagaggg aggaatggac 4981 ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga tctaagcaca 5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc 5101 cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaacaacg agacccttcc 5161 cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa ataacataat 5221 tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca cagtgtcacc 5281 cagaaactct cctggagaaa ttttattaaa cttagagttg ggccctgatt tgaaccctta 5341 tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag ttcaggttct 5401 cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc cgccaaattt 5461 cccagtggaa ttcttaagcc cagcccagat cacaatgctc ccacacttaa tagtagatgt 5521 taggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat tcttccatta 5581 tagtaaccag cctaatagcc gcatgagatt agtggctatg ctctataccc cactcagatc 5641 taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta ggcctactcc 5701 tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaaaacta agcctttttc 5761 cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc ccatcgattc 5821 gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca ggtgcacact 5881 tgatggtgag ttacaaggca caacccagtt gctcccatct ggcatctgtg cattcagagg 5941 acgggtgaca gcacaaatta accaacgtga caggtggcac atgcaactgc aaaacctcaa 6001 tggtacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac ctgacttcaa 6061 gggcgtcgtg tttgggatgg tgagccaaag aaatgtgggt aatgatgcgc ctggctcaac 6121 cagagcccaa caggcgtgga tttcaaccta tagcccccaa tttgtcccca aattaggttc 6181 tgtcaatctt agaattagtg ataatgatga tttccaattc cagccgacaa aattcacacc 6241 agtgggcgtc aatgatgacg atgatggcca cccgttcaga caatgggaac taccaaacta 6301 ttcaggggag ctcaccttga atatgaatct tgccccccca gttgctccaa attttcctgg 6361 tgaacaattg ttattcttca gatctttcgt gccatgctca ggaggttaca accaaggtat 6421 tatagattgt cttattcccc aagaatggat ccaacacttc tatcaggaat cagcaccctc 6481 ccagtcagac gtggccctaa tcaggtatgt caaccccgat acgggacgca cactgtttga 6541 agcaaaattg cacagatctg gttacattac tgtggctcac tctggagact atcctcttgt 6601 tgttccggct aatggacact ttagatttga ttcttgggta aatcagtttt actcactcgc 6661 cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggggc tttcattgca 6721 ggattggcag gcgacatgct cacgtcatct gtgggctccc ttgtgaacgc aggggcaaac 6781 gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc ttcctttcag 6841 catgataaag agatgctcca agcgcaggtg agggcaacca agcagctgca atctgaaatg 6901 atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga tgcagcaagg 6961 ggatccattg gtgcacccat gacaaaggtg cttgactggt ctggcactcg atactgggcg 7021 cccaattcca caaagacaac tggctattcg ggacaattca cctcttcacc tgtgcatatg 7081 tctagcccaa atgctccaca atcaaaacct gcaaagccta ggtctctagc tccttcctct 7141 tcttctagca gtgtctatag tatgtatact caatctactc atttaacatc tggctcttct 7201 agtaatgctt cttctgcctc cacaaaattg acaaatttaa gctctggctc ctctcaaaac 7261 agaacagcag agtgggtaaa tcaacagaga agtcttagcc ctttcatgag tggcgcactt 7321 aacatctcac atatcacgcc accctcaagt agggcttcca gttctgggac ggtctcgacc 7381 gtgcccaagg aagttttgga ctcctggacg tctgcgttta acacacacag acagccgctc 7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat aattggctat 7501 aatgtgattt ctttctaaat ttggctaatt tgt //