Typing tool
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Typing tool
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Complete norovirus genomes
| MK789430 | GII.2 | |
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| GII.P2 |
ORF1: 1..5094
ORF2: 5075..6703
ORF3: 6703..7482
LOCUS MK789430 7536 bp RNA linear VRL 20-APR-2019
DEFINITION Norovirus GII isolate 3453 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MK789430
VERSION MK789430.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Santiso-Bellon,C., Fuentes-Trillo,A., Vila-Vicent,S., Monzo,C., da
Silva Ribeiro de Andrade,J., Gozalbo Rovira,R., Buesa,J.,
Chaves,F.J. and Rodriguez-Diaz,J.
TITLE Nearly Complete Genome Sequences of Human Norovirus from Valencia
(Spain)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Santiso-Bellon,C., Fuentes-Trillo,A., Vila-Vicent,S., Monzo,C., da
Silva Ribeiro de Andrade,J., Gozalbo Rovira,R., Buesa,J.,
Chaves,F.J. and Rodriguez-Diaz,J.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2019) Microbiology and Ecology, University of
Valencia, Avenida Blasco Ibanez 17, Valencia, Valencia 46010, Spain
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.11.1; MEGAHIT with CD-HIT v.
v1.1.3
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="3453"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Spain: Valencia"
/collection_date="Jun-2016"
/note="genotype: GII.P2_GII.2"
gene <1..5094
/gene="ORF1"
CDS <1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCA41758.1"
/translation="MASNDASAAAAVNSNNDNTKSSSDGMLNNMAVTLKRALGARPKQ
PAPREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVVFSTAGGVSGLPELTTVGQPPEA
NTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISIA
KVELTPLSLYWRPVYTPQYLISPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDSWL
SRRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLK
PLNILNILASCDWTFAGIVESLILLAELFDVFWTPPDVSAMIAPLLGDYELQGPEDIA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
DEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLARELAK
KIASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEKAK
RDFPGQPDMWKDAYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARASG
LLHERLDEYELQGPPLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTMDE
LKKAIKNITIRKCQIVYGGNTYTLESDGKGRVVVERVQNASVQINNEIAGAVHHLRCA
RIRYYVKCVQEAIYSLLQIAGTVFVTSRIVSRMNIQNLWSRPLTEDADEATMKEGCPK
PRDEEEFVVSSEDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLVTG
SEIRKRNPDDFKPKGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTV
ATILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPKPSVLEAAKKTIINVLEQTIDPPQRWTYAQACASLDKTTSSGFPHHVRKNEHWNG
ESFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLAT
MVRCARSFGGLMDELKAHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWDST
QQRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLREY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGPNH
EDPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
mat_peptide <1..984
/gene="ORF1"
/product="p48"
mat_peptide 985..2082
/gene="ORF1"
/product="NTPase"
mat_peptide 2083..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6703
/gene="ORF2"
CDS 5075..6703
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCA41759.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKQNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6703..7482
/gene="ORF3"
CDS 6703..7482
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCA41760.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSTAPVRQTDFQHTQNRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTSDWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atggcgtcta acgacgcttc tgctgccgct gctgttaaca gcaacaacga caacacaaaa
61 tcttcaagtg acggaatgct taacaacatg gccgtcaccc ttaaacgagc ccttggggcc
121 cggcccaaac agccggcccc gagggaaaaa cccccaagac cccctagacc accaacacca
181 gaactaatta aaagaatccc ccccccacca cctaatgatg gggatgaacc aaccgtggtg
241 tttagcactg caggtggtgt gtctggccta cctgagctca caacagtcgg tcaaccacct
301 gaagctaaca cggcctttag cgtgcctccc ctcagccaaa gggaaaacag ggacgctaag
361 gagccgttaa ctggaactat tctggaaatg tgggacgggg agatttatca ctatggactg
421 tatgtggaaa aagggcttgt attaggcgtg cacaagccac cggctgccat tagcatagcc
481 aaagtggaat taacgcctct ctcactgtat tggaggcctg tgtacacgcc tcagtacctc
541 atatctccag acaccttgag gaaactccac ggtgaactat ttccctatac agcctttgaa
601 aacaactgtt atgccttctg ctgttgggtt ttggacctta acgattcatg gctaagcagg
661 aggatgatta gcaggactac tggctttttt aggccctacc aagagtggaa caggaaaccc
721 ctcccaacca tggatgactc aaaattgaaa aaggtcgcaa acatcgttct atgtgcattg
781 tcatcattgt tcactagacc cattaaggat ataattggca agcttaaacc cctcaacatc
841 ctgaacattc tggcctcgtg cgattggacc ttcgctggca tagttgagtc actaatcctc
901 ttggctgaac tctttgatgt gttctggaca cccccagatg tgtctgcaat gatcgcaccc
961 ctcctcggtg actatgagct acaaggccct gaagacatcg ctgtggagct cgtacccgtt
1021 gtgatgggtg ggataggtct ggtgctggga ttcaccaaag agaaaatagg taagatgctc
1081 tcctctgcag catcaacttt gagggcatgc aaagatcttg gagcctatgg gctggagata
1141 ctgaaactag tcatgaaatg gttcttccca aagaaggatg aggccaacga actggctatg
1201 gttagagcca ttgaagacgc tgtattggac ctggaggcca ttgagaacaa ccatatgacc
1261 actctattga aagacaagaa cagccttgca gcctacatga agaccctgga catggaagag
1321 gaaaaagcta ggaagttatc caccaaatca gcatcccctg acattgttgg caccataaat
1381 gccctgttgg ctaggatcgc tgccgcgcgt tccttagttc atagggccaa ggaggagctc
1441 tccagcaggc caaggccggt cgtcttgatg atctctggca agccagggat aggaaagacc
1501 cacttggcca gagaactggc aaagaaaatc gcctcaacac tcacaggaga ccagagagtg
1561 ggcctcatcc cacggaatgg agttgaccat tgggacgcct acaaaggtga gagagtggtg
1621 ctctgggatg attacgggat gagcaacccc atccacgatg cgctgaggtt gcaagaactg
1681 gcagacacat gtccattgac tctaaattgt gacaggattg aaaacaaggg gaaagtcttt
1741 gacagcgatg cgatcataat taccaccaat ttggtcaatc ccgcgccgct ggattatgtt
1801 aactttgagg cctgctccag acgtatagac ttccttgtgt atgctgatgc cccagaagtc
1861 gagaaagcaa agcgggactt ccccggccaa ccagacatgt ggaaggacgc ctatcgctct
1921 gacttctcac acatcaaact acaacttgca ccacaaggtg ggtttgacaa aaatggtaac
1981 acccctcatg gtaaaggagt gatgaagact ctcaccgcca gctcactggt tgcgcgtgcc
2041 tctggtctct tgcacgagag gctagatgag tacgaattgc aaggtccacc cctctcaacc
2101 ttcaactttg accgcaacaa aattgcagcg ttcagacaac tcgctgctga aaacaagtat
2161 ggtctggtgg acacgatgag ggtgggtaac cagctcagaa atgtcacgac catggatgaa
2221 ctcaagaagg ctatcaagaa catcacaatc agaaagtgtc agatagtcta tggtggcaac
2281 acttacacgc ttgagtctga cggcaagggt agagttgtgg ttgagagggt gcagaacgcc
2341 agcgtgcaaa tcaacaatga aatcgctggt gcagtacacc accttagatg tgccagaata
2401 cggtattatg ttaaatgtgt ccaagaggcc atctactcac tcctccaaat tgctggcacg
2461 gtgtttgtca cttcacgcat cgtaagccgc atgaacatcc aaaatttatg gtccaggcca
2521 ttaactgaag atgcagatga ggccaccatg aaagaggggt gccctaaacc tagagatgaa
2581 gaagaatttg tcgtctcctc agaagatatc aagccagagg gcaagaaagg taaaaacaag
2641 agtggccggg gcaagaaaca cacggcattc tcaagcaaag gtctcagtga tgaggagtac
2701 gaagagtaca aaaggattag agaggagaga aatggcaaat actccataga ggaataccta
2761 caggatagag acaagtacta tgaagaggtg gccattgcca gggcaactga agaagacttc
2821 tgtgaagaag aagaggttaa gatccgtcag aggatcttca ggccaactag aaagcaacgc
2881 aaggaagaaa gagccaacct tggcctcgtc accggatctg agatcaggaa gaggaaccca
2941 gatgacttta aaccaaaagg aaagctgtgg gccgacgatg ataggagcgt cgactacaac
3001 gaaagaatca gttttgaggc cccaccaagc atttggtcta gaattgtcaa ctttggttct
3061 ggatgggggt tttgggtgtc acctagcctc ttcataacat caacacatgt cataccccaa
3121 ggaataactg aagcctttgg tgtacccata aggcaagtgc aaatacacaa atcgggcgaa
3181 ttctgtcgcc tgagattccc aaaacccatc aggacagatg tgtcaggtat gatactggag
3241 gagggagcgc ctgaaggcac tgttgccacc atactcatca agagaaccac tggagaactg
3301 atgccccttg cagcaaggat gggcacccac gcgaccatga ggatacaagg acgcacggtg
3361 ggcggccaaa tgggaatgct gctcactgga tccaatgcaa agagcatgga tcttggcacc
3421 acgcctggtg actgtgggtg tccctacatt tacaaaaggg gtaatgatta catagtcatt
3481 ggagttcaca cagcagctgc ccgtggcgga aacactgtca tctgcgccac acaaggtagt
3541 gagggtgagg ccacactcga gggtggtgac aacaaaggga catactgtgg ggcaccaatc
3601 ctaggacccg ggagtgcccc gaaactgagc actaagacca aattctggag gtcctctaca
3661 acaccactcc cacccggcac atacgagccg gcatatctgg ggggaaaaga cccccgagtc
3721 aaaggtggac catctctgca acaagtcatg cgagaccaac tgaagccatt caccgaaccc
3781 cgtggtaaac caccaaaacc aagtgtcctt gaagctgcca aaaagacaat tatcaatgtg
3841 ctagagcaaa caatagaccc cccacagagg tggacgtacg cgcaagcgtg cgcatctctt
3901 gacaaaacca catctagtgg gtttccccac cacgtgcgca aaaacgagca ctggaatggg
3961 gagtctttca caggaaaatt ggctgatcag gcatcaaaag caaacctaat gtttgaagag
4021 ggaaagcaca tgactccagt ttacacagct gcccttaagg acgagttggt caaaactgag
4081 aaggtgtatg ggaaaataaa gaagaggttg ctttggggct ctgatctggc cacaatggtg
4141 cggtgcgcgc gctcttttgg tggtttgatg gacgaactta aggcccactg tgtaacactt
4201 ccgataaggg ttggcatgaa tatgaatgaa gatggaccaa tagtctttga gaaacactcc
4261 agatacaggt atcactatga tgcagactat tccaggtggg attcaacaca gcagagagcc
4321 gtcctggctg cggccatgga gattatggtt aaattctcag cagaaccaca actagcccaa
4381 atagttgcag aggatctact gtcgcctagt gtagttgatg tgggcgactt caaaatttcc
4441 atcaacgaag ggttaccatc aggtgtccct tgcacctccc aatggaactc cattgcacac
4501 tggctcctca ccttgtgtgc cctttctgaa gttacagatc tctctcccga tattgtgcaa
4561 gccaactccc tcttctcctt ctatggtgat gatgaaattg tgagtacaga cattaaatta
4621 gacccagaaa agttgacggg gaagttgaga gaatacggcc tcaaacccac tcggcctgac
4681 aagactgagg gccccctgat cattagcgag gatctgaatg gcctgacctt cttgaggaga
4741 accgtcaccc gtgaccctgc aggatggttt ggcaaactgg accagagctc tatactcagg
4801 caattgtatt ggaccaaagg tcctaatcat gaagacccct ttgagtcaat gattccacac
4861 tcccagaggc ccatacaact catgtcactc ttgggcgaag cagcactgca tgaaccatcg
4921 ttttacagca agatcagcaa gcttgtgata tctgagttga aagaaggtgg aatggatttt
4981 tacgtgccca ggcaagaacc catgttcagg tggatgagat tttcggattt gagcacgtgg
5041 gagggcgatc gcaatcttgc tcccagtctt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatctact gatggtgcag ccggcctcgt gccagaaagt aacaatgagg tcatggctct
5161 tgaacccgtg gctggtgccg ccttggcagc cccagtcacc ggtcaaacaa acattataga
5221 cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaatttacag tttctccccg
5281 taatgcccct ggtgaagtgc tattgaatct agagttgggt ccagaattaa atccttatct
5341 ggcacatcta gcaagaatgt ataacgggta tgccggtggg atggaggtgc aggtcatgtt
5401 ggctgggaac gcgttcacag ccggcaagtt ggtcttcgcc gctgtaccac ctcacttccc
5461 ggttgaaaac cttagcccac agcaaatcac catgttccct catgtgatta tagatgtaag
5521 gaccttagaa cctgtcttac taccacttcc tgatgttagg aacaatttct tccactacaa
5581 tcagaaagat gatcctaaaa tgagaattgt ggctatgctt tacacccccc ttaggtctaa
5641 tggttcaggt gatgatgtgt tcacagtctc ctgcagggtg ctgactagac cctcccctga
5701 ttttgatttc acatatctgg tgccaccaac agtagaatct aaaacaaaac cattcactct
5761 cccaatcctc acacttgggg aactttccaa ttctaggttc ccagtgtcca tagaccagat
5821 gtacaccagc cccaatgagg ttatatcagt gcagtgtcaa aatggtaggt gcacattgga
5881 cggggagctt caggggacaa cacaacttca agtcagtggt atttgtgctt tcaaggggga
5941 agtgaccgcc catttgcacg acaatgacca cctatataat gtcaccatca caaacctgaa
6001 tgggtccccc tttgacccct ccgaagacat ccctgcccct ctgggcgtgc ctgattttca
6061 gggaagggtc tttggtatca tctcccaaag agacaagcag aatagccctg ggcacaatga
6121 accagcaaac aggggacacg atgctgtggt tcctacttac acagcacagt acaccccaaa
6181 attgggtcag attcaaattg gcacatggca gaccgacgat ctcacagtca accaaccagt
6241 caaatttacc ccagttggtc tcaatgacac tgaacatttt aaccaatggg tggtccccag
6301 atacgctggt gccctaaacc tcaacacaaa tcttgcccct tctgttgctc cagtgtttcc
6361 aggagagcgc ctgcttttct tcagatcata tattcctctc aagggtggtt atggaaatcc
6421 agccattgat tgcctactac cacaagagtg ggtgcaacac ttctatcagg aggctgcccc
6481 atcaatgagt gaggtggccc ttgtcagata catcaacccg gacactggcc gggcactgtt
6541 tgaggccaag ctccacagag ctggtttcat gacagtctcg agcaacacca gtgccccggt
6601 ggttgtgcct gccaatggat acttcagatt tgactcttgg gtgaatcaat tctattctct
6661 cgcccccatg ggaactggaa atgggcgtag aagggttcaa taatggctgg agcttttgta
6721 gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct
6781 aatgcaataa atcagagggc agaatttgat tttaatcaaa aattacagca aaattctttt
6841 aatcatgata aggagatgtt gcaggctcag attcaggcaa ctaagcagct gcaggcagac
6901 atgatggcta ttaaacaggg ggtcctgacc gctggcggct tttcccctgc tgatgcagcc
6961 agaggtgccg ttaatgcgcc catgacacag gcgctggact ggaacggtac aaggtattgg
7021 gcaccaggct ctatgaggac cacatcttat tctgggaaat tcacatcaac cgccccagtg
7081 agacagaccg actttcagca cacccaaaac cggccatcga gtggctcttc tgtgtcctcc
7141 tttgctactc aatcttcgag gccaactctg accacaacca ctgggtcctc acatggcaca
7201 gcctcatcaa attcaactcg cagcacgagc ctctcccaat caacggtctc tagagctaca
7261 tctaggacta gtgattgggt tagagatcaa aatagaaatt tggaacccta tatgcatggt
7321 gccttacaga cagcctttgt caccccaccc tccagcaggg cgtctgatgg gacagtctca
7381 accgtcccaa agggtgtttt ggactcctgg acacctgcgt tcaacacccg caggcagccg
7441 ctctttgcac acctccgtaa gaggggggag tcacaagctt agtgaaaagg tggaaaattt
7501 gtttagaata aattgctttt accttttaaa aaaaaa
//