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Typing tool
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Complete norovirus genomes
MK762627 | GII.12 | ![]() |
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GII.P16 |
ORF1: 4..5103 ORF2: 5084..6691 ORF3: 6691..7470LOCUS MK762627 7504 bp RNA linear VRL 13-APR-2019 DEFINITION Norovirus GII isolate Hu/US/2017/GII.P16-GII.12/Douglas0168 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MK762627 VERSION MK762627.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7504) AUTHORS Barclay,L., Cannon,J.L., Wikswo,M.E., Phillips,A., Browne,H., Montmayeur,A.M., Tatusov,R.L., Burke,R.M., Hall,A.J. and Vinje,J. TITLE Emergence and characterization of multiple viruses associated with a novel GII.P16 polymerase in the United States, 2015-2018 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7504) AUTHORS Barclay,L., Cannon,J.L., Getz,K., Montmayeur,A.M., Tatusov,R.L., Chhabra,P. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (05-APR-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7504 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Douglas0168" /isolate="Hu/US/2017/GII.P16-GII.12/Douglas0168" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="USA" /collection_date="26-Sep-2017" /note="genotype: GII.P16-GII.12" gene 4..5103 /gene="ORF1" CDS 4..5103 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QBX91108.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPLTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA ISMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN DSWLSRRMVQRTTGFFRPYQEWNRKPLPTIDDSKIKKVANIFLCSLSTLFTRPIKDLI GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDV EKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNASVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE ALKPEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPTGITEAFGVPIKQVQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide 4..999 /gene="ORF1" /product="p48" mat_peptide 1000..2097 /gene="ORF1" /product="NTPase" mat_peptide 2098..2628 /gene="ORF1" /product="p22" mat_peptide 2629..3027 /gene="ORF1" /product="VPg" mat_peptide 3028..3570 /gene="ORF1" /product="Pro" mat_peptide 3571..5100 /gene="ORF1" /product="RdRp" gene 5084..6691 /gene="ORF2" CDS 5084..6691 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBX91109.1" /translation="MKMASNDAVPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPVLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATDSTKFTPKLGAVQIGTWEQDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRMQ" gene 6691..7470 /gene="ORF3" CDS 6691..7470 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBX91110.1" /translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTSASHARTVDLTKKTSATPAPMPVSRPSSITSTVSTRSTL ISGSSNSPSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMNGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWSSAFNTHRQPLFAHLRRRGESQA" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac 61 aaggaaaaat cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc 121 ctcggggcca ggcccaaaca gcctgccccg agagacaaac cacaaaagcc cccaagacca 181 ctaactcccg agttggtcaa gaggataccc cctcctccac ctaatggcga agaagaagaa 241 gaaccagtca ttaggtatga ggttaagagt gggatctctg gcctgcccga gctcacaaca 301 gtcccccaac cggacgtggc caacacagca ttcagtgttc caccactgag cttgagggaa 361 aacagggaag ccaaggaacc gctaacaggg gcaatattag agatgtggga tggagagata 421 taccactacg gcctgtacgt ggagaaaggt ttagtgttgg gtgtacacaa accacctgca 481 gccataagca tggcaaaagt ggagctgacg ccgctgtcat tgtattggcg tgtggtgtac 541 actccccaat acctcatctc ccctgaaact ctcaggaggc tcaacggaga ggcattccct 601 tacaccgcct ttgacaacaa ctgctatgcc ttttgctgct gggtgttaga cctcaatgac 661 tcatggctta gcaggaggat ggtgcaaaga acaacgggct tcttcagacc ttaccaagag 721 tggaacagaa aacccctgcc taccatagat gactccaaaa ttaagaaggt agcaaatata 781 ttcctatgtt cattgtccac attgttcact agacccataa aagacctcat aggaaaaatt 841 aaaccattaa acatattgaa tatccttgca acgtgtgact ggacgtttgc cggaatagtg 901 gagtctctaa tattacttgc tgaactcttc ggagttttct ggacaccccc agatgtgtct 961 gctatgatcg ctcccttact tggggattac gagttgcaag ggccagaaga cctcgccgtt 1021 gaactcgtac ctgtggtgat gggagggatt ggtttggtgt tgggattcac caaagagaaa 1081 attggcaaaa tgttgtcctc agcagcatca acactcaggg cttgcaaaga ccttggtgcc 1141 tatggcttag agatactcaa attggtcatg aagtggttct tcccaaagaa agaggaggcc 1201 aatgagctag ccatggtgag ggccatagag gacgctgtac tagatcttga ggcaatagaa 1261 aataaccaca tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca 1321 ctggacatgg aggaggagaa agccagaagg ttgtccacaa aatctgcatc ccctgacata 1381 gttgggacaa tcaacgccct gctggctcga atagcagcgg ccaggtcatt agtccacagg 1441 gccaaggaag agctatctag caggatgaga ccagtagttg ttatgatatc tggcaaacca 1501 ggaataggca aaactcatct ggccagggaa gtggcaagaa aggtggcatc cactctcaca 1561 ggggatcaaa gagtcggact cataccaaga aacggtgtgg accattggga tgcatacaaa 1621 ggtgagagag tcgtgctgtg ggacgactat ggcatgagta accccattca tgatgctctt 1681 cgcatacaag aattggctga tacgtgtccc ctcaccttaa attgtgacag aattgaaaat 1741 aaaggaaaag tttttgacag tgaagtcata ataatcacaa caaaccttgc caatccagcc 1801 ccacttgatt atgtcaactt tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct 1861 gaggcaccag atgtggaaaa ggcaaaacgg gactttcctg gtcagccaga tatgtggaag 1921 gacgccttca aatcggactt ttcacacatc aagctacagc tcgcacctca gggcggcttt 1981 gacaaaaacg gcaacacccc acatgggaaa ggggtgatga agaccctcac taccggttct 2041 ctgattgccc gcgcatcagg cctactgcat gagaggatgg atgaatttga actccaaggt 2101 cctacaatca ccaccttcaa tttcgaccgg aacagaatca cagcatttag acaattggct 2161 gcagaaaaca agtatggact ggtggacacc atgaaagtcg gcaatcaatt aaaaggagtg 2221 aaaaccatgg aagagctcaa acaagcaatc aggaatgtga ccatcaagag gtgccggatc 2281 atctacggtg gatccacata tgatcttgaa tctgatggca agggcaaagt tttggtggaa 2341 aaggtcaaga acgcctctgt acagaccaac aacgagttgg ccggggccct gcaccatctc 2401 aaacacgccc gaatcaggta ctatgtcaag tgtgtgcaag aagcagtcta ttctatcata 2461 caaattgccg gcgctgcgtt tgtcaccacg cgcattgcac gccgcatgaa catacaagaa 2521 ctctggtcga agccacaatt ggatcaaaat gaatcagaga ctaaggaaga ggccctcaag 2581 ccagaagatg acgagttcgt catatcttct aaggacatca aggaggaagg aaagaagggc 2641 aaaaataaaa ctggccgtgg caagaaacac actgcattct ccagcaaggg cttgagcgat 2701 gaggagtatg acgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag 2761 gaatatcttc aagacagaga caggtactat gaagaactcg ccattgccaa ggccacggaa 2821 gaagacttct gtgaagagga ggagataaaa atccgtcaga gaattttccg tcctaccagg 2881 aaacaaagga aggaagagag ggccacatta gggctagtaa caggttcaga aatcagaaaa 2941 agaaaccctg atgacttcaa acccaaaggg aagctgtggg ccgatgacaa cagaagtgtt 3001 gactacaatg agaaactgga ttttgaggcc cccccaagca tatggtctag gattgtgagc 3061 tttggttctg gctggggctt ctgggtatca ccaagcctgt tcataacatc aactcatgta 3121 atccccacag gcataacaga agcatttgga gtccccatca aacaagttca aatccacaaa 3181 tcaggtgaat tttgccgatt cagattccca aaaccaatta gaccagatgt gacaggaatg 3241 atcttggaag aaggtgcgcc tgagggcacc gtggcaactg tgctcatcaa acgccccacc 3301 ggagagctca tgcctcttgc agccagaatg ggaacacacg caaccatgaa aattcaaggc 3361 cgcatggttg gcggacagat gggcatgttg ctcactggat caaatgctaa aggaatggat 3421 ttgggaacaa ctcctggaga ctgtggctgt ccttacatct ataaaagggg caatgactat 3481 atagtcattg gggtgcacac tgcagcagcc cgtggtggaa acaccgtcat ctgtgccaca 3541 cagggaagtg agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtggg 3601 gcacccatcc taggccctgg gggtgcacca aaattgagca ccaaaaccaa attttggagg 3661 tcatcgaaca cgccccttcc accagggaca tatgagcctg cctacctcgg cggccgtgac 3721 ccgcgtgtta agggtgggcc ctccttgcag caggtaatga gagaccagtt gaagccattc 3781 actgaaccca ggggcaaacc tccaagacca agtgtattgg aagcagccaa acaaaccatc 3841 atcaatgtcc tcgagcaaac cctggaccct ccacaaaaat ggacatacgc acaggcgtgt 3901 gcctcacttg acaaaaccac ctccagcggt cacccctatc acgttcgaaa gaatgaattc 3961 tggaatggtg agaccttcac tggtaaattg gcagaccaag cgtcaaaagc aaacctaatg 4021 tttgaggaag ggaaacacat gacaccagtg tacacagcag cactcaagga cgagctagtc 4081 aagactgaga aaatctatgg aaagatcaag aagagactgc tctggggctc tgatttgtcc 4141 accatgatcc ggtgcgctag gtcatttggt gggctcatgg acgagatgaa ggcacactgt 4201 atatcactcc cagtccgagt tggcatgaat atgaatgaag atggcccaat aatatttgag 4261 aaacattcca gatacaaata tcactatgat gcagactact ctcgttggga ttcaacacaa 4321 cagagggcag tactggcagc agccttggaa atcatggtca gattctctgc agaaccacaa 4381 ttggcacaaa tagtcgctga ggacctactg gcccctagtg tagtagatgt aggagacttt 4441 aaaatcacaa taaatgaggg gctcccctct ggtgtgccat gcacttctca atggaactcc 4501 atcgcacact ggctgctaac tctctgtgcc ttgtctgaag tcactaagct gtcacctgac 4561 attatacagg caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgac 4621 ataaagttgg accccgaaca gttaaccgcc aaattgaagg agtacggcct aaaaccaacc 4681 cgcccagaca aaaccgaggg acccctgatc atcagtgaag atttgaacgg actcactttc 4741 ctccgaagga cggtgactcg tgacccagct ggctggtttg gaaaactgga ccaaagctca 4801 attttgaggc agatgtactg gactagagga ccaaatcatg aagaccccaa tgagacaatg 4861 ataccccatt ctcaaaggcc catacagctc atggcactgc ttggtgaagc ctctcttcac 4921 ggaccctctt tctacagtaa aatcagtaaa ttggtcataa ctgaactcaa agaaggtggg 4981 atggactttt acgtgccaag gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg 5041 agcacgtggg agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgaa 5101 tgacgccgtt ccatctaatg atggtgcagc cggtctcgta ccagaggtca acaatgagac 5161 catggcactt gaaccggtgg ctggggcttc gatagccgcc ccactcaccg gtcaaaataa 5221 tgttatagac ccctggatta gattaaattt tgtgcaggcc cctaatggag agtttacagt 5281 ctcaccccgc aactcgcctg gggaagtcct actcaatttg gaattaggtc ctgaattgaa 5341 tccatatttg gcacaccttt ctagaatgta taatggttat gcaggtggag ttgaggtaca 5401 agtgctactg gctgggaacg cgttcacggc tggaaaattg gtatttgctg cagttccccc 5461 ccattttcca ttagagaata taagccctgg tcaaataacc atgttccctc atgtaattat 5521 tgatgttagg actttggaac cagttttatt gcctctacca gatgtcagaa ataacttctt 5581 ccattacaat cagcaaaatg agccgaggat gaggcttgtt gcaatgcttt atacccctct 5641 tagatctaat ggttctggtg atgatgtgtt caccgtctcc tgtagggtgc tcactcgacc 5701 ctctcctgat tttgatttta attatttggt gcccccaaca gttgaatcta aaacaaaacc 5761 attcacactc cctgtcttga ccattgggga gttaaccaat tccaggttcc ctgtgcccat 5821 agatgaactc tacactagcc ccaatgagag tttggtggtt caaccccaga acgggaggtg 5881 cgcgctggat ggggagttgc agggcaccac ccagctcctt cccacggcga tttgctcgtt 5941 caggggtcgg atcaatcaga aagtgagtgg agagaatcat gtttggaaca tgcaagtcac 6001 caacattaac ggaacccctt ttgacccaac agaggatgtt ccagcccctc tgggcacgcc 6061 agatttttct ggcaagctct ttggtgtcct aagccagagg gaccatgata atgcctgcag 6121 gagtcatgat gcagtgattg caactgattc taccaaattt accccaaaat tgggtgctgt 6181 acaaattggc acatgggaac aagatgatgt acacatcaac caacccacca agtttactcc 6241 agttggattg tttgagaatg aaggttttaa tcaatggaca cttcctaatt attctggagc 6301 tttaacactc aatatggggt tggccccccc tgtggccccc acattccctg gtgagcaaat 6361 tctcttcttc aggtcccaca ttccccttaa aggaggtgtt gcagacccag ttattgattg 6421 tcttctaccc caagagtgga tccaacacct ttatcaggag tcagccccct cacaaacaga 6481 tgtggcactg attagattca caaatccaga cacagggcgt gtcctatttg aagcaaaatt 6541 gcacaggagt ggctacatca cagtggccaa cactggtagc agaccaattg tggtgccagc 6601 taatggttat ttcaggtttg actcttgggt taatcagttt tactctcttg cccccatggg 6661 aactgggaat gggcgcagaa ggatgcagta atggctggag ctttcatagc agggcttgcc 6721 ggtgacatag tcaccaatag cattggctca ctcgtgaacg ctggggccaa tgcaataaac 6781 cagaaagtag actttgaaaa caacaagcaa ctacaacagg catcttttaa ccatgacaaa 6841 gagatgttgc aagctcaaat tcaggccacc aaacagctac aggctgatat gattgcaatc 6901 agacaagggg tgttgaccgc aggcggcttc tcccctactg atgcagcaag aggtgcagtc 6961 aacgcgccca tgactcaagt cttggattgg aatgggacca gacattgggc cccaggagcc 7021 acgaaaacaa ctgctttctc cggtgggttt accagtgcct ctcatgccag gaccgttgac 7081 ctgaccaaga agacatcagc cacaccagcc cctatgcctg tttctaggcc cagttctatt 7141 acttccactg tttctactcg ctctactttg attagtgggt cctctaattc tccttcttca 7201 gctaggagct cttctagtgt ttcttcccaa cctacttcct catcctcccg aactagtgag 7261 tgggtacgca gtcaaaatag ggcgctggag ccttatatga atggggcgct gcgcacagcc 7321 tacgtgacgc ctccatccag tagggcttct agcaatggca cagtctcaac cgtgccaaaa 7381 gaggttttgg actcctggtc gtctgcattc aatacacaca gacagccgct gtttgctcat 7441 ctccgtcgga gaggggagtc acaagcttag tgaaaagatg gtcttttctt tctttccttt 7501 gaaa //