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Typing tool
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Complete norovirus genomes
MK754445 | GII.12 | ![]() |
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GII.P16 |
ORF1: 1..5100 ORF2: 5081..6688 ORF3: 6688..7467LOCUS MK754445 7513 bp RNA linear VRL 11-APR-2019 DEFINITION Norovirus GII isolate Hu/US/2017/GII.P16-GII.12/Somerset0204 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MK754445 VERSION MK754445.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7513) AUTHORS Barclay,L., Cannon,J.L., Wikswo,M.E., Phillips,A., Browne,H., Montmayeur,A.M., Tatusov,R.L., Burke,R.M., Hall,A.J. and Vinje,J. TITLE Emergence and characterization of multiple viruses associated with a novel GII.P16 polymerase in the United States, 2015-2018 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7513) AUTHORS Barclay,L., Cannon,J.L., Johnston,J., Montmayeur,A.M., Tatusov,R.L., Chhabra,P. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (05-APR-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7513 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Somerset0204" /isolate="Hu/US/2017/GII.P16-GII.12/Somerset0204" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="USA" /collection_date="11-Dec-2017" /note="genotype: GII.P16-GII.12" gene 1..5100 /gene="ORF1" CDS 1..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QBW96036.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPLTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA ISMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLV GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDV EKAKRDFPGQPDMWKDAFKTDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVNNASVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE APKPEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPTGITEAFGVPIKQVQIHKSGEFCRFRFPKPIRQDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLDQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP NHEDPDETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide 1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6688 /gene="ORF2" CDS 5081..6688 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBW96037.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVLAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPVLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATDSTKFTPKLGAVQIGTWEQDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRMQ" gene 6688..7467 /gene="ORF3" CDS 6688..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBW96038.1" /translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQVQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTSASHARTVDLTKKTSATPAPMPVSRPSSIASTVSTRSTL ISGSSNSPSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMNGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWSSAFNTHRQPLFAHLRRRGESQA" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag 61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc 121 ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacta 181 actcccgagt tggtcaaaag gataccccct cctccaccta atggcgaaga agaagaagaa 241 ccagtcatta ggtatgaggt taagagtggg atctctggcc tgcccgagct cacaacagtc 301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt gagagaaaac 361 agggaagcca aggaaccgct aacaggggca atattagaga tgtgggatgg agagatatac 421 cactacggcc tgtacgtgga gaaaggctta gtgttgggtg tacacaaacc acctgcagcc 481 ataagcatgg caaaagtgga gctgacgccg ctgtcattgt attggcgtgt ggtgtacact 541 ccccaatacc tcatctcccc tgaaactctc aggaggctca acggagaggc attcccttac 601 accgcctttg acaacaactg ctatgccttt tgctgctggg tattagacct caatgactca 661 tggcttagca ggaggatggt gcaaagaaca acgggcttct tcagacctta ccaagagtgg 721 aacagaaaac ccctgcctac catggatgac tccaaaatta agaaggtagc aaatatattc 781 ctatgttcat tgtccacatt gttcactaga cccataaaag acctcgtagg aaaaattaaa 841 ccattaaata tattgaatat cctggcaacg tgtgactgga cgtttgccgg aatagtggag 901 tctctaatat tacttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct 961 atgatcgctc ccttacttgg ggattacgag ttgcaagggc cagaagacct cgccgttgaa 1021 ctcgtacctg tggtgatggg agggattggt ttggtgttgg gattcaccaa agagaaaatt 1081 ggcaaaatgt tgtcctcagc agcatcaaca ctcagggctt gcaaagacct tggtgcctat 1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat 1201 gagctagcca tggtgagggc catagaggac gctgtactag atcttgaggc aatagaaaac 1261 aaccacatga caaccctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg 1321 gacatggagg aggagaaagc cagaaggttg tccacaaaat ctgcatcccc tgacatagtt 1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc 1441 aaggaagagc tatctagcag gatgagacca gtagttgtta tgatatctgg caaaccagga 1501 ataggcaaaa cccatctggc cagggaagtg gcaagaaagg tggcatccac tctcacaggg 1561 gatcaaagag tcggactcat accaagaaac ggtgtggacc attgggatgc atacaaaggt 1621 gagagagtcg tgctgtggga cgactatggc atgagcaacc ccattcatga tgctcttcgc 1681 atacaagaat tggctgatac gtgtcccctc accttaaatt gtgacagaat tgaaaataaa 1741 ggaaaagttt ttgacagtga agtcataata atcacaacaa accttgccaa tccagccccg 1801 cttgattatg tcaactttga ggcctgttcc aggagaattg atttcctggt gtacgctgag 1861 gcaccagatg tagaaaaggc aaaacgggac tttcctggtc agccagatat gtggaaggac 1921 gccttcaaaa cggacttttc acacatcaag ctacagcttg caccccaggg cggctttgac 1981 aaaaacggca acaccccaca tgggaaaggg gtgatgaaga ccctcactac cggttctctg 2041 attgcccgcg catcaggcct actgcatgag aggatggatg aatttgaact ccaaggtcct 2101 acaatcacca ccttcaattt cgaccggaat agaatcacag cattcagaca attggctgca 2161 gaaaacaagt atggactggt ggacaccatg aaagtcggca atcaattaaa aggagtgaaa 2221 accatggaag agctcaaaca agcaatcagg aatgtgacca tcaagaggtg ccggatcatc 2281 tacggtggtt ccacatatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag 2341 gtcaataacg cctctgtaca gaccaacaac gagttggccg gggccctgca ccatctcaaa 2401 cacgcccgaa tcaggtacta tgtcaagtgt gtgcaagaag cagtctattc tatcatacaa 2461 attgccggcg ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc 2521 tggtcgaagc cacaattgga tcaaaatgaa tcagagacta aggaagaggc ccccaagcca 2581 gaagatgacg agttcgtcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa 2641 aataaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag 2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggaa 2761 tatcttcaag acagagacag gtactatgaa gaactcgcca ttgccaaggc cacggaagaa 2821 gacttctgtg aagaggagga gataaaaatc cgtcagagaa ttttccgtcc taccaggaaa 2881 caaaggaagg aagagagggc cacattaggg ctagtaacag gttcagaaat cagaaagaga 2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag aagtgttgac 3001 tacaatgaga aactggattt tgaggccccc ccaagcatat ggtctaggat tgtgagcttt 3061 ggttctggct ggggcttctg ggtatcacca agcctgttta taacatcaac tcatgtaatc 3121 cccacaggca taacagaagc atttggagtc cccatcaaac aagtccaaat ccacaaatca 3181 ggtgaatttt gccgattcag attcccaaaa ccaattagac aagatgtgac aggaatgatc 3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga 3301 gagctcatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc 3361 atggttggcg gacagatggg catgttgctc actggatcaa atgctaaagg aatggatttg 3421 ggaacaactc ctggagactg tggctgtcct tacatctata aaaggggcaa tgactatata 3481 gtcattgggg tgcacactgc agcagcccgt ggtggaaaca ccgtcatctg tgccacacag 3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca 3601 cccatcctag gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca 3661 tcgaacacgc cccttccacc agggacatat gagcctgcct acctcggcgg ccgtgacccg 3721 cgtgttaagg gtgggccctc cttgcagcag gtaatgagag accagttgaa gccattcact 3781 gaacccaggg gcaaacctcc aagaccaagt gtattggaag cagccaaaca aaccatcatc 3841 aatgtcctcg atcaaaccct ggaccctcca caaaaatgga cctacgcaca ggcgtgtgcc 3901 tcacttgaca aaaccacctc cagcggtcac ccctatcacg ttcgaaagaa tgaattctgg 3961 aatggtgaaa ccttcactgg taaattggca gaccaagcat caaaagcaaa cctaatgttt 4021 gaggaaggga aacacatgac accagtgtat acagcagcac tcaaggacga gctagtcaag 4081 actgagaaaa tctatggaaa gatcaagaag agactgctct ggggctctga tttgtccacc 4141 atgatccggt gcgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata 4201 tcactcccag tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa 4261 cattccagat acaaatatca ctatgatgca gactactctc gttgggattc aacacaacag 4321 agggcagtac tggcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg 4381 gcacaaatag tcgctgagga cctactggcc cctagtgtag tagatgtagg agactttaaa 4441 atcacaataa atgaggggct cccctctggt gtgccatgca cttctcaatg gaactccatc 4501 gcacactggc tgctaactct ctgtgccttg tctgaagtca ctaagctgtc acctgacatt 4561 atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata 4621 aaattggacc ccgaacagtt aaccgccaag ttgaaggagt acggcctaaa accaacccgc 4681 ccagacaaaa ccgagggacc cctgatcatc agtgaagatt tgaacggact cactttcctc 4741 cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt 4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag accccgatga gacaatgata 4861 ccccattctc aaaggcccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga 4921 ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg 4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc 5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga 5101 cgccgctcca tctaatgatg gtgcagccgg tctcgtacca gaggtcaaca atgagaccat 5161 ggcacttgaa ccggtggctg gggcttcgat agccgcccca ctcaccggcc aaaataatgt 5221 tatagacccc tggattagat taaattttgt gcaggcccct aatggagagt ttacagtctc 5281 accccgcaac tcgcctgggg aagtcctact caatttggaa ttaggtcccg aattgaatcc 5341 atatttggca cacctttcta gaatgtataa tggttatgca ggtggagttg aggtacaagt 5401 gctactggcc gggaacgcgt tcacggctgg aaaattggta cttgctgcag ttccccctca 5461 ttttccatta gagaatataa gccctggtca aataaccatg ttccctcatg taattattga 5521 tgttaggact ttggaaccag ttttattgcc tctaccagat gtcagaaata acttcttcca 5581 ttacaatcag caaaatgagc cgaggatgag gcttgttgca atgctttata cccctcttag 5641 atctaatggt tctggtgatg atgtgttcac cgtctcctgt agggtgctca ctcgaccctc 5701 tcctgatttt gattttaatt atttggtgcc cccaacagtc gaatctaaaa caaaaccatt 5761 cacactccct gtcttgacca ttggggagtt aaccaattcc aggttccctg tgcccataga 5821 tgaactctac actagcccca atgagagttt ggtggtacaa ccccagaacg ggaggtgcgc 5881 gctggatggg gagttgcagg gcaccaccca gctccttccc acggcgattt gctcgttcag 5941 gggtcggatc aatcagaaag tgagtggaga gaatcatgtt tggaacatgc aagtcaccaa 6001 cattaacgga accccttttg atccaacaga ggatgttcca gcccctctgg gcacgccaga 6061 cttttctggc aagctctttg gtgtcctaag ccagagggac catgataatg cctgcaggag 6121 tcatgatgca gtgattgcaa ctgattctac caaatttacc ccaaaattgg gtgctgtaca 6181 aattggcaca tgggaacaag atgatgtaca catcaaccaa cccaccaagt ttactccagt 6241 tggattgttt gagaatgaag gttttaatca atggacactt cctaattatt ctggagcttt 6301 aacactcaat atggggttgg ccccccctgt ggcccccaca ttccctggtg agcaaattct 6361 cttcttcagg tcccacattc cccttaaagg aggtgttgca gacccagtta ttgattgtct 6421 tctaccccaa gagtggatcc aacaccttta tcaggagtca gccccttcac aaacagatgt 6481 ggcactgatt agattcacaa atccagacac agggcgtgtc ctatttgaag caaaattgca 6541 caggagtggc tacatcacag tggccaacac tggtagcaga ccaattgtgg tgccagctaa 6601 tggttatttc aggtttgact cttgggttaa tcagttttac tctcttgccc ccatgggaac 6661 tgggaatggg cgcagaagga tgcagtaatg gctggagctt tcatagcagg gcttgccggt 6721 gacatagtca ccaatagcat tggctcactc gtgaacgctg gggccaatgc aataaaccag 6781 aaagtagact ttgaaaacaa caagcaacta caacaagcat ctttcaacca tgacaaagag 6841 atgttgcaag ttcaaattca ggccaccaaa cagctacagg ctgatatgat tgcaatcaga 6901 caaggggtgt tgaccgcagg cggcttctcc cctactgatg cagcaagagg tgcagtcaac 6961 gcgcccatga ctcaagtctt ggattggaat gggaccagac attgggcccc cggagccacg 7021 aaaacaactg ctttctccgg tgggtttacc agtgcctctc atgccaggac cgttgacctg 7081 accaagaaga catcagccac accagcccct atgcctgttt ctaggcccag ttctattgct 7141 tccactgttt ctactcgctc tactttgatt agtgggtctt ctaattctcc ttcttcagct 7201 aggagctctt ctagtgtttc ttcccaaccc acttcctcat cctcccgaac tagtgagtgg 7261 gtacgcagtc aaaatagggc gctggagcct tatatgaatg gggcgctgcg tacagcctac 7321 gtgacgcctc catccagtag ggcttctagc aatggcacag tctcaaccgt gccaaaagag 7381 gttttggact cctggtcgtc tgcgttcaat acacacagac agccgctgtt tgctcatctc 7441 cgtcggagag gggagtcaca agcttagtga aaagatggtc ttttctttct ttcctttgaa 7501 aatccctgtc gac //