Typing tool
|
Complete norovirus genomes
MK733207 | GII.27 | ||
---|---|---|---|
GII.P26 |
ORF1: 1..5060 ORF2: 5041..6672 ORF3: 6672..7436LOCUS MK733207 7444 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate PNV027026 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733207 VERSION MK733207.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7444) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7444) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7444) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7444 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="PNV027026" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="11-Jun-2010" /note="genotype: GII" gene <1..5060 /gene="ORF1" CDS <1..5060 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QBR98810.1" /translation="TAGKTSSNSEIHNNDATPASNIFANMTVGLKKALGARPKQPTPR APSPPKEKKRTLPPIPPPPPNGEDIVIKYTKQGDLVEGVPTVSTVEIPPTLDTAYSVP PLDQREKLDAKEPLTGSIIEMWDGEIYHYGIYVERGLILGVHKPPAAISFARIELTPL SLYWRTVYTPPYLVDPQNLKKLHGESFPYTAFDNNCYSFCCWVLDLNDSWLNRKHVSR TTGFYRPYQEWNRKPMPTVDEGKLKKVANVFLCAISGLFTRPIKDIIGKLKPLNILNI VSNCDWTFPGVVESLILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVI LGGIGMVLGFTREKIGRILSSAASSLRACREIGNYGIEVVKLVMKWFFPSKNEASEMD MVRAIEDAVLDFEAIENNHMTSLLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVG TINALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLA GDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPISDALRLQELADTCPLTLNCDRI ENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRRIDFLVYADSPAVDKAKRDFPGQP DMWKDAFKQDFSHIKLQLAPQGGFDKNGNTPHGKGVMKSLTTHSLIARATGLLHERLD EFDLQGPELPVYNFDQNKVASFRRLAADNKYGLMETIKAGNKLKEVKTLEQFKEAVKN IRINPCRIIYNSIAYDLDSNGAGKVNVKKVGDTKIQTSNELSSALTNLRGARIRYYVK CFQEMIYSLLQIAGAAFVTTRMAKRININNIWSKPEEKPIVSPEPPAPPEEHWTIAPS DAIQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRY YEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFR PRGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPPNI SEAFGVPINQIQVHRCGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGEL MPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWV VIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGSAPKLSTKTKFW RSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPKPAVLEAAK ETICGVLEQTIDPPQQWSYAQACSSLDKTTSSGHPHHKKKNDNWNGESFTGVLADQAS RANLMYEQGKHMQPVYTAALKDELVKTSKIYDKVKKRLLWGSDLGTMIRCARSFGGLM DEMKANCVNLPIRVGMNMNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRHVLGVALEI MVRFSAEPELAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSITHWLLTLC AMSEVSGLSPDVVQANSCFSFYGDDEIVSTDIKLDAFKLTEKLKEYGLIPTRPDKTEG PLVIKEKLEGLTFLRRDVCRDPAGWYGKLDQSSIIRQLYWTKGPNHEDPNETMIPHSQ RPIQLMSLLGEAALHGPPFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTW EGDRNLAPEGVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2984 /gene="ORF1" /product="VPg" mat_peptide 2985..3527 /gene="ORF1" /product="Pro" mat_peptide 3528..5057 /gene="ORF1" /product="RdRp" gene 5041..6672 /gene="ORF2" CDS 5041..6672 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98808.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGFAGG IEVQVVMAGNAFTAGKIIFAAVPPHFPVDNISPSQITMFPHIIIDVRTLEPVNIPLPD VRNSFFHYSQNNEPRMRLLAMLYTPLRSNGSADDVFTVSCRVLTKPSPDFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVAIDMLHTSPTENIVVQPQNGRCTLDGELLGTT QLVTSNICAFRGSIHDHQTNGDEHQWHFNITNPNGTPFDPTEDVPAPLGTPDFKGQLY GVISQRDREGTLGENNQKANRSHEGVISTIAPRFTPKLGSVMIGTWTTTDIRNQPSRF TPVGLNDDDNYRQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYMPMKGGYGSP YIDCLIPQEWISHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGFITVAKTGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6672..7436 /gene="ORF3" CDS 6672..7436 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98809.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKFDFENNKYLQNA SFAHDKEMLKAQIEATKQLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPNATSTTSMSGGFTGQVVHRTTPNFKTNQAPKSIPSSGSSVRSNSTQLTSLSS HSSGSSRSSGSTAVSSLPSSNRTREWVNQQNLNLEPHMPGSLKTAFVTPPSSTASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAYLHRRGESKV" ORIGIN 1 cgaccgctgg caaaaccagc tcaaacagtg aaattcacaa caatgacgcc acaccagcgt 61 caaacatctt cgccaacatg actgttggct tgaagaaagc cctgggggca cggcctaaac 121 agcctacccc cagggcccct tctcctccta aggagaagaa gagaaccctc cctccaatac 181 cacccccacc acccaatggt gaggatattg tcatcaagta caccaaacag ggtgaccttg 241 tggagggggt ccccacggtt tccaccgtgg agatcccccc tacactggac accgcatata 301 gtgtcccccc cttagaccag agggagaaac ttgatgccaa agaaccgcta acaggctcaa 361 taattgaaat gtgggatgga gagatatacc attatgggat ttatgtggag cgaggtttga 421 ttctcggcgt gcacaagccg cctgcagcaa ttagcttcgc ccgcattgag ttgacccccc 481 tctctcttta ttggagaact gtctacacac caccctacct agtggaccca caaaacctga 541 agaaactcca tggtgagtcc ttcccttaca ccgcatttga caacaactgc tactccttct 601 gctgttgggt tttggacttg aatgattctt ggctcaacag aaaacatgtg tcaaggacta 661 cgggatttta cagaccctac caggagtgga atagaaaacc aatgcccacc gtggatgaag 721 gaaaacttaa gaaagtggcc aatgtgttct tgtgtgccat ctccggcctt ttcaccaggc 781 caatcaagga catcataggg aaactgaaac cattgaacat ccttaacata gtgtcaaact 841 gtgattggac attccctggt gtcgtggaat ccctcatatt gcttgctgaa ttatttggga 901 tcttctggac accgccagac atctccgctt tcgtggcatc cctcctgggt gattacgaaa 961 tgcaggggcc tgaggatata gccactgaga tcgtaccagt catcctcggt ggcattggaa 1021 tggtcctcgg cttcacaagg gaaaagatag ggcgtatact gagttctgcc gcctcatcac 1081 tcagagcatg cagggagatt ggcaactacg gtatagaggt ggtgaagctc gtgatgaagt 1141 ggttcttccc ttccaagaac gaggcgagcg agatggacat ggtcagagca atagaggatg 1201 cagtgcttga tttcgaagcc attgagaaca accacatgac atctctgcta aaagacaaga 1261 acagcctcgc gaccttcctc agggcactgg acatggaaga agagaaagca cggaaactgt 1321 ctaccaaatc tgcctctccg gacattgttg gaaccataaa tgcactccta gccagaattg 1381 cagctgccag atccctcgtc caccgcgcca aagaagagat gtcatccagg atgcgtcctg 1441 ttgtcatcat gatctctggg cggccaggga tagggaaaac acaccttgca cgcgacctgg 1501 ctaagaagat ggcagcaacc ctcgctggtg accaaagggt tggccttgtc ccgagaaacg 1561 gtgttgacca ctgggatgca tacaagggag agaggatagt tctgtgggat gactacggca 1621 tgagcaaccc aatatcagat gcactaagac tccaagaact tgctgacacc tgtcctctaa 1681 cactcaactg tgacagaata gagaacaagg ggaaagtatt tgacagtgac accataatca 1741 tcaccaccaa tctggccaac cctgcccctc ttgactatgt caatttcgag gcatgctctc 1801 gccgcattga ctttctcgtc tatgcggact cccccgctgt tgacaaggca aagagagact 1861 tcccggggca acctgacatg tggaaggatg cattcaagca ggacttctca cacataaaac 1921 tacaattggc accacaagga ggctttgaca agaatggcaa caccccacat ggcaagggcg 1981 tgatgaaatc cctaaccaca cattctctca ttgcccgcgc cacggggctc ctacatgaga 2041 ggctggatga atttgatcta caggggcctg aactcccagt ctataacttt gaccagaaca 2101 aagtggcgtc gttcaggcga ctcgccgccg acaacaagta tggtcttatg gaaaccatca 2161 aagctggtaa taaactaaaa gaggtcaaga cactggaaca gttcaaggag gctgtgaaaa 2221 acatacggat aaacccctgc agaataatct acaactccat agcttatgac ttggactcga 2281 atggagcagg caaagtcaat gtcaagaagg tgggcgacac caagatccag acgagcaatg 2341 agctcagctc cgcactcacc aacttacgcg gcgctagaat tagatactat gtgaaatgct 2401 tccaagaaat gatctattcg ctcctgcaga tcgctggcgc agcgtttgtg acgacgcgga 2461 tggccaaaag aataaacatc aacaatatct ggtccaagcc tgaggaaaag ccgattgtca 2521 gcccagaacc cccagcgcct ccagaagaac actggaccat cgccccaagc gacgcgattc 2581 aggagggcaa gaagggcaag aacaagagtg gcagaggcaa gaaacacact gctttctcca 2641 gtaagggtct cagtgatgag gagtatgatg aatacaagag aatcagggag gagagacaag 2701 gaaaatactc tattgaagaa tacctccaag acagagaccg atactatgag gaattggcaa 2761 tagcaaaagc aactgaagag gatttctgtg aggaggagga ggtcaaaatt aggcagagga 2821 tctttcgtcc taccagaaaa cagcgcaagg aggaaagggc caccctaggg ttagtgacag 2881 gcagtgaaat taggaagagg aacccagatg acttcagacc gagagggaag ttgtgggctg 2941 atgatgatcg tagtgtcaac tataatgaga agatagactt cgaggcccct cctagcctgt 3001 ggtcaagaat agtcaacttt ggatcaggct ggggtttctg ggtgtcatct aacctgttca 3061 taacctccac acacgtgatc cccccaaaca tatcagaagc atttggtgtc ccaattaatc 3121 agatacaggt tcacaggtgt ggcgagttct gcaagatgag gtttcccaag gccatcaggc 3181 ctgatgtctc tggcatgatt ctggaggaag gggcccccga agggacagtg gtgaccatac 3241 ttataaagag gacaactgga gagctcatgc cattggcagc tcgcatgggc acacacgcca 3301 ccatgaagat ccaagggaga atgattggag gtcaaatggg tatgctcctc acaggttcca 3361 atgctaagaa catggacctt ggcaccgtcc cgggtgattg tggatgcccg tatgtctaca 3421 agagaggaaa tgattgggtt gtgatcggag tccacactgc cgccgccaga ggaggcaaca 3481 cagtgatctg tgccacccag ggtccagatg gggaggctac actggaaggg ggtgataacc 3541 atggcaccta ctgtggggcg ccaatactgg gacccggtag cgctccaaaa ctcagcacca 3601 agacaaaatt ctggcggtcc tccaatgcac cactcccccc tggcacgtac gagcctgcct 3661 accttggtgg taaagatccc agggtcaaag ggggcccatc cctgcaacaa gtcatgagag 3721 aacagctgaa acccttcacc gccccacgcg gcaagccacc caagcccgca gtcctggagg 3781 cggccaagga gactatatgt ggtgtgcttg aacagaccat tgacccaccc caacagtggt 3841 cctacgcgca ggcctgctcc tcactagaca aaacaacatc aagtggccac ccccatcaca 3901 agaagaagaa tgacaattgg aatggagaat cattcactgg cgtgctagcc gatcaggctt 3961 ccagagcaaa cctcatgtat gagcagggga aacacatgca gcccgtgtac acagcagcac 4021 ttaaggatga gttggtgaag accagcaaga tatatgacaa agtcaaaaag aggctcttgt 4081 ggggatcaga cctgggaacc atgattcggt gtgcaagatc ttttggtggg cttatggatg 4141 aaatgaaggc aaactgtgta aatctaccaa taagagtggg tatgaacatg aatgaggatg 4201 gccccataat ctttgagaag cactccaagt acaaatatca ttatgatgct gactactcca 4261 ggtgggactc aacacaacaa aggcatgtcc ttggggttgc tcttgagatc atggtcagat 4321 tttcagcaga acctgagttg gcacagatag tggctgagga tctcctgtcg cccagtgtcg 4381 tagacgtggg tgacttcaaa atcacaataa acgagggcct cccatctgga gtcccatgca 4441 catcacagtg gaactcaata acccattggc tgctgactct gtgcgcaatg tcagaagttt 4501 ctggattgtc accagacgtt gtgcaagcaa actcatgctt ctcattctat ggggatgatg 4561 agatagtcag cacagacatt aaattggatg ccttcaaatt aacagaaaag ctcaaagagt 4621 atgggctgat cccaaccagg ccagacaaga cagaaggacc actagtgata aaagagaaac 4681 tagaggggtt gactttcctg aggagggatg tgtgtaggga cccagctgga tggtatggca 4741 agcttgatca gtcatcaatc ataaggcaac tgtattggac caaaggaccc aaccatgaag 4801 atcccaatga aacgatgatc ccacactctc aaagacccat ccaactgatg tcacttcttg 4861 gtgaggcggc tctccacgga ccgccctttt acaagaaggt gagcaagttg gttatcacag 4921 agctaaaaga gggtggaatg gacttttatg tgcccaggca ggaacccatg tttaggtgga 4981 tgagattctc tgacctaagc acgtgggagg gcgatcgcaa tctggctccc gaaggtgtga 5041 atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgcagccgg tctcgtacca 5101 gagatcaaca acgagacaat ggctttggag ccagtagcag gaggggcaat tgctgctccc 5161 ctgactgggc aaacaaattt cattgatccc tggattagaa acaactatgt acaagcacct 5221 aatggtgagt tcacagtatc ccctagaaac tcccctggtg aaattttact caatttggaa 5281 ttaggccctg agctcaaccc tttcttggcc cacctgtcta ggatgtacaa cgggtttgct 5341 ggtggcattg aggttcaagt cgtcatggcg ggcaacgcct tcactgccgg aaagatcatc 5401 ttcgcggcag tgccacccca cttccccgtt gacaacatta gtccttctca aattactatg 5461 ttcccacaca ttataataga tgtaagaacc cttgaacctg taaatatccc attacccgat 5521 gtcaggaata gtttcttcca ttacagccaa aataatgaac cccgtatgag attattagct 5581 atgttgtata cccctcttag atcaaatggt tctgctgatg atgtcttcac agtttcttgt 5641 agggtcctta ccaagccttc ccctgatttt gagttcaatt atttggtccc cccaactgtt 5701 gagtctagga caaaaccctt cacaatacca atacttacga ttggagaaat gacaaactca 5761 aggttccccg tggccattga catgctacac accagcccta ctgagaacat tgttgtccaa 5821 ccgcaaaatg gcagatgcac tctggacggt gagttgctgg gcactacaca gctggtcact 5881 tccaacatct gtgcattcag ggggtccatc catgatcacc agaccaatgg agacgaacat 5941 cagtggcact tcaacatcac caaccccaat ggcactccgt ttgaccccac tgaggacgtg 6001 cccgctccac ttgggacccc ggacttcaag ggacaactct acggagtcat ctctcaaaga 6061 gaccgggagg gaacccttgg tgaaaacaac cagaaggcta acaggtccca tgaaggggtg 6121 atctcaacaa ttgcaccaag gttcacacca aagttagggt cagtcatgat cggcacttgg 6181 actaccactg atataagaaa tcaaccctcc agattcaccc cagttggttt gaatgatgat 6241 gacaattata gacagtggga attaccaaat tattctggag cgctcaccct taatatggga 6301 ttggcaccct ctgtcttccc cacctatcct ggggaacaaa ttcttttctt ccgctcctac 6361 atgccaatga agggaggata tggcagtccg tacatcgatt gccttatacc tcaagaatgg 6421 atttctcatt tctatcagga atcagcaccc tcccaaactg atgtggcttt gattaggtat 6481 gtgaaccccg acacaggacg agtcctgttc gaggccaaat tacacagaca aggattcatt 6541 accgttgcca agactggtga cagccccatc aatgtgcctg ctaatggtta ctttagattt 6601 gattcctggg ttaatcaatt ctactctctc gcccccatgg gaactgggaa tgggcgcaga 6661 agagttcagt aatggctgga gcttttatag caggattggc tggtgacatg ctcacaaaca 6721 ctgtagggtc tctagtaaat gcaggggcta atgcaattaa tcagaaattt gattttgaaa 6781 ataataaata tttacaaaat gcatcatttg ctcatgataa ggagatgttg aaggcacaaa 6841 ttgaggcaac aaaacaactg caggctgaca tgattgcaat caagcaaggg gttctgaccg 6901 ctggcggctt ttcccctact gatgctgcac gtggggccat aaatgccccc atgacaaaag 6961 ttttggattg gaatggaaca aggtactggg caccaaatgc cacctccaca acctcaatgt 7021 cgggtggctt cacaggacaa gttgtgcaca gaaccacgcc aaattttaaa acaaaccagg 7081 cccccaaatc aatacccagt agtgggtctt cagtcaggtc aaactcgacc cagcttacta 7141 gtctgagctc acactcctct ggatcatccc gttccagtgg atccacagct gtcagctctc 7201 taccatcctc caataggact agggaatggg tcaatcagca aaatctcaat ttggaaccac 7261 acatgcctgg atctctcaaa acagcttttg tcacaccacc atctagcaca gcctctagtt 7321 cgggcacagt ctcaaccgtg cccaaaggtg ttttggactc ctggacatct gcgtttaaca 7381 cacgcagaca gccgctcttc gcataccttc atagaagggg ggagtcaaaa gtttagtgaa 7441 aaga //