Typing tool
|
Complete norovirus genomes
MK733206 | GII.27 | ||
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GII.P26 |
ORF1: 1..5060 ORF2: 5041..6672 ORF3: 6672..7436LOCUS MK733206 7444 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate PNV024019 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733206 VERSION MK733206.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7444) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7444) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7444) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7444 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="PNV024019" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Peru" /collection_date="12-Feb-2010" /note="genotype: GII" gene <1..5060 /gene="ORF1" CDS <1..5060 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QBR98805.1" /translation="TAGKTSSNSEIHNDDATPASNIFANMTVGLKKALGARPKQPTPR APSPPKEKKRTLPPIPPPPPNGEDIVIKYTKQGDLVEGVPAVSTVEIPPTLDTAYSVP PLDQREKLDAKEPLTGSIIEMWDGEIYHYGLYVERGLILGVHKPPAAISFARIELTPL SLYWRAVYTPPYLVDPQNLKKLHGESFPYTAFDNNCYSFCCWVLDLNDSWFNRKHVSR TTGFYRPYQEWNRKPMPTMDEGKLKKVANVFLCAISGLFTRPIKDIIGKLKPLNILNI VSNCDWTFPGVVESLILLAELFGVFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVI LGGIGMVLGFTREKIGRILSSAASSLRACREIGNYGIEVVKLVMKWFFPSKNEASEMD MVRAIEDAVLDFEAIENNHMTSLLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVG TINALLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLA GDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPISDALRLQELADTCPLTLNCDRI ENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRRIDFLVYADSPAVDKAKRDFPGQP DMWKDAFKQDFSHIKLQLAPQGGFDKNGNTPHGKGVMKSLTTHSLIARATGLLHERLD EFDLQGPELPVYNFDQNKVASFRRLAADNKYGLMETIKAGNKLKEVKTLEQFKEAVKN IRINPCRIIYNSIAYDLDSNGAGKVNVKKVGDTKIQTSNELISALTNLRGARIRYYVK CFQEMIYSLLQIAGAAFVTTRMAKRININKIWSKPEEKPIVSPGPPAPPEEHWTIAPS DTIQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRY YEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFR PRGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPPNI SEAFGVPINQIQVHRCGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGEL MPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGCPYVYKRGNDWV VIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGSAPKLSTKTKFW RSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPKPAVLEAAK ETICGVLEQTIDPPQQWSYAQACSSLDKTTSSGHPHHKKKNDNWNGESFTGVLADQAS RANLMYEQGKHMQPVYTAALKDELVKTSKIYDKVKKRLLWGSDLGTMIRCARSFGGLM DEMKANCVNLPIRVGMNMNEDGPIIFERHSKYKYHYDADYSRWDSTQQRHVLGVALEI MVRFSAEPELAQIVAEDLLSPSVVDVGDFKVTINEGLPSGVPCTSQWNSITHWLLTLC AMSEVSGLSPDVVQANSCFSFYGDDEIVSTDIKLDAFKLTEKLKEYGLIPTRPDKTEG PLVIKEKLEGLTFLRRDVCRDPAGWYGKLDQSSIIRQLYWTKGPNHEDPNETMIPHSQ RPIQLMSLLGEAALHGPSFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTW EGDRNLAPEGVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2585 /gene="ORF1" /product="p22" mat_peptide 2586..2984 /gene="ORF1" /product="VPg" mat_peptide 2985..3527 /gene="ORF1" /product="Pro" mat_peptide 3528..5057 /gene="ORF1" /product="RdRp" gene 5041..6672 /gene="ORF2" CDS 5041..6672 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98806.1" /translation="MKMASNDAAPSSDGAASLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGFAGG IEVQVIMAGNAFTAGKIIFAAVPPHFPVDNISPSQITMFPHIIIDVRTLEPVNIPLPD VRNSFFHYSQNNEPRMRLLAMLYTPLRSNGSADDVFTVSCRVLTKPSPDFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVAIDMLHTSPTENIVVQPQNGRCTLDGELQGTT QLVTSNICAFRGSIHDHQTNGDEHQWHFNITNPNGTPFDPTEDVPAPLGTPDFKGQLY GVISQRDREGTPGENNQKANRSHEGVISTVAPRFTPKLGSVMIGTWTTDDIRNQPSRF TPVGLNDDDNYRQWELPNYSGALTLNMGLAPSVFPTYPGEQILFFRSYMPMKGGYGSP YIDCLIPQEWISHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGFITVAKTGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6672..7436 /gene="ORF3" CDS 6672..7436 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98807.1" /translation="MAGTFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA SFAHDKEMLKAQIEATKQLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPNATSTTSMSGGFTGQVVHRTTPNFKTSQAPKSTPSSGSSVRSNSTQLTSLSS HSSGSSRSSGSTAVSSLPSSNRTREWVNQQNLNLEPHMPGSLKTAFVTPPSSTASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAYLHRRGESKV" ORIGIN 1 cgaccgctgg caaaaccagc tcaaacagtg aaattcacaa cgatgacgcc acaccagcgt 61 caaacatctt cgccaacatg actgttggct tgaagaaagc cttgggggca cggcctaaac 121 agcctacccc cagggcccct tctcctccta aggagaagaa gagaaccctc cctccaatac 181 cacccccacc acccaatggt gaggatattg tcatcaagta caccaaacag ggtgaccttg 241 tggagggggt ccccgcggtt tccaccgtgg agatcccccc tacactggac accgcatata 301 gtgtcccccc cttagaccag agggagaagc ttgatgccaa agagccgcta acaggctcaa 361 taattgaaat gtgggatgga gagatttacc attatgggct ttatgtggag cgaggcttga 421 ttctcggcgt gcacaagcca cctgcagcaa ttagcttcgc ccgcattgag ttgacccctc 481 tctctcttta ttggagagct gtctacacac caccctacct agtggaccca caaaacctga 541 agaaactcca tggcgagtcc ttcccttaca ccgcatttga caacaactgc tactccttct 601 gctgttgggt tttggacttg aatgattcat ggttcaacag aaaacatgtg tcaaggacta 661 cggggtttta cagaccctat caggagtgga atagaaaacc aatgcccacc atggatgaag 721 gaaaacttaa gaaagtggcc aatgtgttct tgtgtgccat ctctggcctt ttcaccaggc 781 caatcaagga catcataggg aaactgaaac cattgaacat cctcaacata gtgtcaaact 841 gtgattggac attccctggt gtcgtggaat ccctcatatt gcttgctgaa ttatttgggg 901 tcttctggac accgccagac atctccgctt tcgtggcatc cctcttgggt gattacgaaa 961 tgcaggggcc tgaagatata gccactgaga tcgtgccagt catcctcggt ggcattggaa 1021 tggtcctcgg cttcacaagg gaaaagatag ggcgtatact gagttctgcc gcctcatcac 1081 tcagagcatg cagggagatt ggcaactacg gtatagaggt ggtgaagctc gtgatgaagt 1141 ggttcttccc ttccaagaac gaggcgagcg agatggacat ggtcagagca atagaggatg 1201 cagtgcttga tttcgaagcc attgaaaaca accacatgac atctctgcta aaagacaaga 1261 acagcctcgc gaccttcctc agggcactgg acatggaaga agagaaggca cggaaactgt 1321 ctaccaaatc tgcctctcca gacattgttg gaaccataaa tgcactccta gccagaattg 1381 cagctgccag atccctcgtc caccgcgcca aagaagagat gtcatccagg atgcgtcctg 1441 ttgtcatcat gatctctggg cggccaggga tagggaaaac acacttggca cgcgacctgg 1501 ctaagaagat ggcagcaacc ctcgctggtg atcaaagggt tggccttgtc ccgagaaatg 1561 gtgttgacca ctgggatgca tacaagggag agaggatagt tctgtgggat gactacggca 1621 tgagcaaccc aatatcagat gcactaagac tccaagaact tgctgacacc tgtcctctaa 1681 cactcaactg tgacagaata gagaacaagg ggaaagtatt tgacagtgac accataatca 1741 tcaccaccaa tctggccaac cctgcccctc ttgactatgt caatttcgag gcatgctctc 1801 gccgcattga cttcctcgtc tatgcggact cccccgctgt tgacaaggca aagagagact 1861 tcccggggca acctgatatg tggaaagatg cattcaagca ggacttctca cacataaaac 1921 tacaattggc accacaagga ggctttgaca aaaatggcaa caccccacac ggcaagggcg 1981 tgatgaaatc cctaaccaca cattctctca tcgcccgcgc cacggggctc ctacatgaga 2041 ggctggatga atttgatcta caggggcctg aactcccagt ctataacttt gaccagaaca 2101 aagtggcgtc gttcaggcga ctcgccgccg acaacaagta tggccttatg gaaaccatca 2161 aagctggcaa taaactaaaa gaggtcaaga cactggaaca gttcaaggag gctgtgaaaa 2221 acatacggat aaacccctgc agaataatct acaactccat agcttatgac ttggactcga 2281 atggagcagg caaagtcaac gtcaagaagg tgggcgacac caagatccag acgagcaatg 2341 agctcatctc cgcactcacc aacttacgcg gcgccagaat tagatactat gtgaagtgct 2401 tccaagaaat gatctactca cttctacaga tcgctggcgc agcgtttgtg acgacgcgga 2461 tggccaaaag aataaacatc aacaagatct ggtccaagcc tgaggaaaag ccgattgtca 2521 gcccaggacc cccagcgcct ccagaagaac actggaccat cgccccaagc gacacgattc 2581 aggagggcaa gaagggcaag aacaagagtg gcagaggcaa gaaacacact gctttctcca 2641 gtaagggtct cagtgatgag gagtatgatg aatacaagag aatcagggag gagagacaag 2701 gaaaatactc tattgaagaa tacctccaag acagagaccg atactatgag gaattggcaa 2761 tagcaaaagc aactgaagag gatttctgtg aggaggagga ggtcaaaatc aggcagagga 2821 tctttcgtcc taccagaaaa cagcgcaagg aggaaagggc caccctaggg ttagtgacag 2881 gcagtgaaat taggaagagg aacccagatg atttcagacc gagagggaag ttgtgggctg 2941 acgatgatcg tagtgtcaac tataatgaga agatagactt cgaggcccct cctagcctgt 3001 ggtcaagaat agtcaacttt ggatcaggct ggggtttctg ggtgtcatct aacctattta 3061 taacctccac acacgtgatc cccccaaaca tatcagaagc atttggtgtc ccaatcaatc 3121 agatacaggt tcacaggtgt ggcgagttct gcaagatgag gtttcccaag gccatcaggc 3181 ctgatgtctc tggcatgatt ctggaggaag gggcccccga agggacagtg gtgaccatac 3241 ttataaaaag gacaactgga gagctcatgc cattggcagc tcgcatgggc acacacgcca 3301 ccatgaagat tcaagggaga atgattggag gtcaaatggg tatgctcctt acaggttcca 3361 atgctaagaa catggacctt ggcaccgtcc cgggtgattg tggatgcccg tatgtttaca 3421 agagaggaaa tgattgggtt gtgatcggag tccacactgc cgccgccaga ggaggcaaca 3481 cagtaatctg tgccacccag ggtccagatg gggaggctac actggaaggg ggtgataacc 3541 atggcaccta ctgtggggcg ccaatactgg gacccggtag cgctccaaaa ctcagcacca 3601 agacaaaatt ctggcggtcc tccaatgcac cactcccccc tggcacgtac gagcctgcct 3661 accttggtgg gaaagatccc agggtcaaag ggggcccatc cctgcaacaa gtcatgagag 3721 aacaactgaa acccttcacc gccccacgcg gcaagccacc caagcccgca gtcctggagg 3781 cggccaagga gaccatatgt ggtgtgcttg aacagaccat tgacccaccc caacagtggt 3841 cctacgcgca ggcctgctcc tcactagaca aaacaacatc aagtggccac ccccatcaca 3901 agaagaagaa tgacaattgg aatggagaat cattcactgg cgtgctagcc gatcaggctt 3961 ccagagcgaa cctcatgtat gagcagggga aacacatgca gcccgtgtac acagcagcac 4021 ttaaggatga gttggtaaag accagcaaga tatatgacaa agtcaaaaag aggctcttgt 4081 ggggatcaga cttgggaacc atgattcggt gtgcaagatc ttttggtggg cttatggatg 4141 aaatgaaggc aaactgtgta aatctaccaa taagagtggg tatgaacatg aatgaggatg 4201 gccccataat ctttgagagg cactccaagt acaaatatca ttatgatgct gactactcca 4261 ggtgggactc aacacaacaa aggcatgtcc ttggggttgc tcttgagatc atggttagat 4321 tttcagcaga acctgagttg gcacagatag tggctgagga tctcctgtcg cccagtgtcg 4381 tagacgtggg tgacttcaaa gtcacaataa atgagggcct cccatctgga gtcccatgca 4441 cgtcacagtg gaactcaata acccattggc tgctgaccct gtgcgcaatg tcagaagtat 4501 ctggattgtc accagacgtt gtgcaagcaa attcatgctt ctcattctac ggggatgatg 4561 agatagtcag cacagacatt aaattggatg ccttcaaatt aacagaaaaa ctcaaagagt 4621 atgggctgat cccaaccagg ccagacaaga cagaaggacc actagtgata aaagagaaac 4681 tagaggggtt gactttcctg aggagggatg tgtgtaggga cccagctgga tggtatggca 4741 agcttgacca gtcatcaatc ataaggcaac tgtattggac caaaggaccc aaccatgaag 4801 atcccaatga aacgatgatc ccacactctc aaagacccat ccaactgatg tcacttcttg 4861 gtgaggcggc tctccacgga ccgtcctttt acaagaaggt gagcaaattg gttatcacag 4921 agctaaaaga gggtgggatg gacttttatg tgcccaggca agaacccatg ttcaggtgga 4981 tgagattctc tgacctaagc acgtgggagg gcgatcgcaa tctggctccc gaaggtgtga 5041 atgaagatgg cgtcgaatga cgccgctcca tctagtgatg gtgcagccag tctcgtacca 5101 gagatcaaca acgagacaat ggctttggag ccagtagcag gaggggcaat tgctgctccc 5161 ctgactgggc aaacaaattt cattgatccc tggattagaa acaactatgt acaagcacct 5221 aatggtgagt tcacagtgtc ccctagaaac tcccctggtg aaattttact caatttggaa 5281 ctaggccctg agctcaaccc tttcttggcc cacctgtcta ggatgtacaa cgggtttgct 5341 ggtggcattg aggttcaagt catcatggcg ggcaacgcct tcactgccgg aaagatcatc 5401 ttcgcggcag tgccacccca cttccccgtc gacaacatta gtccttctca aattactatg 5461 ttcccacaca ttataataga tgtaagaacc cttgaacctg taaatatccc actacccgat 5521 gtcaggaata gtttcttcca ttacagccaa aataatgagc cccgtatgag actattagct 5581 atgttgtata cccctctcag atcaaatggt tctgcagatg atgtcttcac agtttcttgt 5641 agggtcctta ccaagccttc ccctgatttt gagttcaatt atttggtccc cccaactgtt 5701 gagtctagga caaagccctt cacaatacca atacttacga ttggagaaat gacaaactca 5761 aggttccccg tggccattga catgctacac accagtccta ctgagaacat tgttgtccaa 5821 ccacaaaatg gcagatgcac tctggacggt gagttgcagg gcaccacaca gctggtcact 5881 tccaatatct gtgcattcag ggggtccatc catgatcacc agaccaatgg agacgaacat 5941 cagtggcatt tcaacatcac taaccccaat ggcactccgt ttgaccccac tgaggacgtg 6001 cccgctccac ttgggacccc ggacttcaag ggacaactct acggagtcat ctctcaaaga 6061 gaccgagagg gaactcctgg tgaaaacaac cagaaggcta acaggtccca tgaaggggtg 6121 atctcaacag ttgcgccaag gttcacacca aagttagggt cagtcatgat cggcacttgg 6181 actactgatg atataagaaa tcaaccctcc agattcaccc cagttggttt gaatgatgat 6241 gataattata ggcagtggga actaccaaat tattctggag cactcaccct taacatggga 6301 ttggcaccct ctgtcttccc cacctatcct ggagaacaaa ttcttttctt ccgctcctac 6361 atgccaatga agggaggata tggcagtcca tacatcgatt gccttatacc tcaagaatgg 6421 atttctcatt tctatcagga atcagcaccc tcccaaactg atgtggcttt gattaggtat 6481 gtgaaccccg acacaggacg agtcctgttc gaggccaaat tacacagaca aggattcatc 6541 accgttgcca agactggtga cagccccatc aatgtacctg ccaatggtta ctttagattt 6601 gattcctggg ttaaccaatt ctactctctc gcccccatgg gaactgggaa cgggcgcaga 6661 agagttcagt aatggctgga acttttatag caggattggc tggtgacatg ctcacaaaca 6721 ctgtagggtc tctagtaaat gcaggggcta atgcaattaa tcagaaagtt gattttgaaa 6781 acaataaata tttacaaaat gcatcatttg ctcatgataa ggagatgttg aaggcacaaa 6841 ttgaggcaac aaaacaactg caggctgaca tgattgcaat caagcaaggg gttctgaccg 6901 ctggcggctt ttcccccact gatgctgcac gtggggccat aaatgccccc atgacaaaag 6961 ttttggattg gaatggaaca aggtactggg caccaaatgc cacctccaca acctcaatgt 7021 cgggtggctt cacaggacaa gttgtgcaca gaaccacgcc aaattttaaa acgagccagg 7081 cccccaaatc aacacccagt agtgggtcct cagtcaggtc aaactctacc cagcttacta 7141 gtctgagctc acactcctct ggatcatctc gttccagtgg atccacagct gtcagctctc 7201 taccatcctc caataggact agggaatggg tcaatcagca aaacctcaac ttggaaccac 7261 acatgcctgg atctctcaaa acagcttttg tcacaccacc atctagcaca gcctctagtt 7321 cgggcacagt ctcaaccgtg cccaaaggtg ttttggactc ctggacatct gcgtttaaca 7381 cacgcagaca gccgctcttc gcataccttc atagaagggg ggagtcaaaa gtttagtgaa 7441 aaga //