Typing tool
|
Complete norovirus genomes
MK733205 | GII.27 | ||
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GII.PNA9 |
ORF1: 1..4891 ORF2: 4872..6503 ORF3: 6503..7267LOCUS MK733205 7308 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate Hu/AR/2018/GII.27[PNA9]/Arg15813 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733205 VERSION MK733205.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7308) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7308) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7308) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7308 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/AR/2018/GII.27[PNA9]/Arg15813" /isolation_source="feces of an immunocompromised patient" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="09-Jan-2018" /note="genotype: GII.27 [PNA9]" gene <1..4891 /gene="ORF1" CDS <1..4891 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QBR98804.1" /translation="PPIPPPPPNGEDIVVTYTKQDDKISGVPTVSTVENSPLHDTAYS VPPLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVERGLILGVHKPPSALSMARIELT PLSLYWRVVYTPPYLVAPDTLRKLHGESFPYTAFDNNCYMFCCWVLDLNDSWLNRKFV SRTTGFYRPYQDWNRKPLPTMDEGKLKKVANVLLCGLSSLFTRPIKDLISRLKPLNIL NIVSNCDWTFPGVVEALILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVP VVLGGIGMVLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLIMKWFFPTKNEVNE MEMVRAIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDI VGTINAILARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKRMAST LSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCD RIENKGKVFDSDTIIITTNLSNPAPLDYVNFEACSRRIDFLVYADSPSVDKAKKDFPG QPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHER LDEFDLQGTELPMYNFDQNKVAAFRRLAADNKYGLMETLKAGNKLKEVKTLEHFKEAV KDIRIKPCRIIYNSTAYELESSGTGRVIVKKVGDQKVQANNELYSALNNLRRARIRYY IKCFQEMIYTLLQIAGAAFVTSRMTQRMNIGRLWAKPEKQMETSVEPPPPPIEDWTIS PTDTVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRD RYYEELAIAQATEENFCEEEEIKIRQRIFRPTRKQRREERANLGLVTGSEIRKRNPDD FKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVVPP NITEAFGVPISQIQVHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTG ELMPLASRMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRGNE WVVIGVHTAAARGGNTVICATQGPEGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTK FWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEA AKETICNVLEQTIEPPQKWSYAQACASLDKTTSSGYPHHKKKNDNWNGESFTGVLADQ ASKANLMFEQGKHMQPVYTAALKDELVKTSKIYDKIKKRLLWGSDLGTMIRCARSFGG LMDEMKANCVRLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRHVLGLAL EIMVRFSAEPELAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLT LCAMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYGLIPTRPDKT EGPLIIKESLEGLTFLRRNICRDPVGWYGQLDQSSIMRQLYWTKGPNHEDPNETMIPH SQRPVQLMSLLGEASLHGPAFYKKVSKLVITELREGGMDFYVPRQEPMFRWMRFSDLS TWEGDRNLAPEGVNEDGVE" mat_peptide <1..796 /gene="ORF1" /product="p48" mat_peptide 797..1894 /gene="ORF1" /product="NTPase" mat_peptide 1895..2419 /gene="ORF1" /product="p22" mat_peptide 2420..2815 /gene="ORF1" /product="VPg" mat_peptide 2816..3358 /gene="ORF1" /product="Pro" mat_peptide 3359..4888 /gene="ORF1" /product="RdRp" gene 4872..6503 /gene="ORF2" CDS 4872..6503 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98802.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGFAGG IEVQVIMAGNAFTAGKIIFAAVPPNFPTENLSPPQITMFPHVIIDVRTLEPVNIPLPD VRNNFFHYSQNNEPRMRLLAMLYTPLRSNGSAEDVFTVSCRVLTKPSPDFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVAIDFLHTSPTENIVVQPQNGRCTLDGELLGTT QLVTSNICAFRGSISGHENTGDNHQWHFNITNPNGTPFDPTEDVPAPLGTPDFTGQLY GVISQRNREGTSGENNQKANRSHEGVISTLAPRFTPKLGSVMIGTWTTDDIENQPSRF APIGLNDDDNYNQWQLPNYSGALTLNMGLASSVFPTYPGEQLLFFRSYIPMKGGYGSP FIDCLIPQEWVSHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGYITVAKTGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" gene 6503..7267 /gene="ORF3" CDS 6503..7267 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98803.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA SFAHDKEMLQAQVEATKKLQAEMIAIKQGVLTAGGFSPSDAARGAINAPMTKVLDWNG TRYWAPNATSTTSMSGGFTGQTVHRPTPNFKTNQAPKSMPSSGSSVRSNTTQLSSLSS HSSGSSRSSGSTTVSSLPSSSRTRDWVNQQNLNLAPHMPGSLRTAFVTPPSSRASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 ccccccaata cctcccccac cacctaatgg ggaggacatt gtcgtcacgt acacaaaaca 61 agatgacaaa atcagtggag ttcccaccgt ctccaccgtt gaaaactctc ccttgcatga 121 caccgcatac agtgttccac ccttggacca aagggaaaag gttgatgcaa aggagcccct 181 gacgggttca atactcgaaa tgtgggatgg tgagatttac cactatgggc tttatgtgga 241 aaggggtctg attctcggcg tgcacaagcc accatctgct ctgagcatgg cacgcattga 301 gttgaccccc ctttccctct attggagggt ggtgtatacc ccgccctacc ttgttgcccc 361 agacaccctc aggaaactcc atggggaatc cttcccctac acagcatttg acaataactg 421 ttacatgttc tgctgttggg tcctggatct taacgattcg tggctcaaca ggaagttcgt 481 gtcaaggact acaggattct acagacccta ccaggactgg aacaggaagc ccctgcccac 541 catggatgaa ggcaaactca agaaggtagc caatgtacta ctgtgtggtc tatccagcct 601 cttcaccagg cccattaaag acctcataag taggctgaaa ccactaaaca ttctcaacat 661 tgtatccaat tgtgattgga cattccccgg tgttgtagag gcccttatcc tgcttgcaga 721 actctttggt atcttctgga ccccaccaga catatctgct ttcgtcgctt ccctgttggg 781 agactacgaa atgcagggtc ctgaggacat tgcaaccgag atcgtgccag tcgtccttgg 841 tggcattggt atggtccttg gtttcaccaa ggagaagatt ggccgactac tcagctcggc 901 tgcgtcatca ctacgggcgt gtagggagat tggcaactac gggatagagg tggtcaaatt 961 aataatgaaa tggttcttcc ccaccaaaaa tgaagtgaac gagatggaaa tggtcagggc 1021 gatagaggat gcagtgcttg actttgaggc aatagaaaac aatcacatga cagctctact 1081 caaggacaag aatagtttgg ccacctttct tagagcccta gacatggagg aggagaaggc 1141 gcgaaaactg tcaaccaaat ccgcatctcc agacatagtc ggcaccataa atgccattct 1201 agccaggata gctgctgcta ggtccctagt ccacagagcc aaggaagaaa tgtcatctag 1261 gatgcgtcct gttgtcatca tgatttcggg ccgacctgga atagggaaga cacatctagc 1321 ccgggactta gccaagagga tggcgtccac actctcggga gaccagagag tgggccttgt 1381 accaagaaac ggcgtcgacc actgggatgc ctacaaaggt gagagaatcg tcctttggga 1441 tgattatggc atgagtaacc ccgtggcgga cgctctgcgc ctccaggagc ttgccgacac 1501 ctgccctttg acactcaact gtgataggat agagaacaag gggaaggtgt ttgacagtga 1561 taccataatc ataaccacca acttgtcaaa ccccgcccca cttgactatg tgaactttga 1621 ggcctgttca cgccgcattg acttccttgt ttatgcggac tctccttcag ttgacaaggc 1681 aaagaaagac ttccccggcc aaccagacat gtggaaagat gcattcaaac ctgacttctc 1741 gcacataaaa ttacaattgg caccgcaggg aggattcgac aagaacggga acaccccaca 1801 tggcaaggga gtgatgaaga ccctgactac gcattccctc atagccaggg ccaccggctt 1861 gctgcatgaa agattggatg aattcgattt acaggggaca gagctaccaa tgtacaactt 1921 tgaccaaaac aaagtggccg cattcaggag gctagcggcc gacaacaagt acggcctaat 1981 ggaaacctta aaggcgggca acaagttgaa ggaggtcaag accctagaac acttcaagga 2041 ggctgtcaag gacatccgca taaaaccatg caggataatc tacaattcca ccgcttacga 2101 attggagtca agcggtactg ggagagtcat cgtcaagaaa gtgggtgacc agaaggtgca 2161 ggccaataat gaactctact ctgccctcaa caatctgcgc agagctagga tcaggtacta 2221 catcaagtgt ttccaggaga tgatctacac actcctccaa atcgctggtg cggcttttgt 2281 aacatcaaga atgacacaga ggatgaacat tggaagactg tgggccaaac cggaaaagca 2341 aatggaaacc tctgtggagc cccccccccc tcctattgaa gactggacca taagcccaac 2401 tgacacagtc caggaaggca agaagggcaa aaacaagagc ggtagaggca agaaacatac 2461 tgccttctct agtaaaggtc tcagtgatga agagtacgac gagtacaaaa ggatcagaga 2521 ggagcgccag gggaaatact ctatagagga gtatctccag gacagagacc ggtactatga 2581 agaattggcc atagcccaag caacagaaga aaatttctgt gaggaggaag agatcaaaat 2641 aagacaaagg attttcaggc caaccaggaa acaacgcaga gaagagaggg ccaatctggg 2701 cctggtcaca gggagtgaaa ttaggaagag gaaccctgac gacttcaagc caagaggaaa 2761 gctgtgggcc gatgatgacc gcagtgtcaa ctacaatgag aaaatagact ttgaggcccc 2821 tcccagtctg tggtccagaa tagtcaactt tggctcgggg tggggtttct gggtctcgtc 2881 caacctattc atcacatcaa cgcatgttgt gccaccaaac atcacggaag cttttggggt 2941 cccaataagc caaatccaag tccacaggag cggagagttc tgcaaaatga ggttccccaa 3001 ggccatcagg cctgatgttt ctgggatgat tcttgaagaa ggtgcgccag aggggacggt 3061 tgtaaccata ctgatcaaaa ggacaaccgg tgagctcatg ccattagcat cccgcatggg 3121 cacccatgcc accatgaaaa tacagggaag aatgattggt ggccaaatgg gaatgctcct 3181 cacagggtcc aacgccaaaa acatggacct tggcaccatc ccaggggact gtggctgccc 3241 ctatgtctac aagaggggca atgagtgggt tgtgatcggg gtacacaccg ctgcggccag 3301 agggggcaac acggtgatat gtgcaacaca agggcccgaa ggtgaggcca cacttgaagg 3361 aggagataac catggaacct actgtggtgc accaatcttg ggaccaggaa atgcaccaaa 3421 actcagcacc aaaaccaaat tttggagatc ctccaatgcc ccacttcccc ctggcacata 3481 tgagcctgcc tacctcggtg ggagggatcc tagagtcaag ggtggcccat cactacagca 3541 agtcatgaga gaacaactca agccattcac tgccccgcgc gggaagccac ctaggccggc 3601 aatcttggaa gctgcaaagg agaccatctg caacgtgctc gagcaaacca tcgaaccacc 3661 tcaaaaatgg tcttacgcgc aagcctgcgc ctccctggac aagaccacgt caagtggcta 3721 cccccatcat aagaaaaaga atgacaactg gaatggtgaa tcttttactg gtgttttggc 3781 cgatcaggca tcaaaagcaa acctcatgtt tgaacaggga aaacacatgc aacccgtgta 3841 cacagctgca ctcaaggatg agcttgtaaa gactagtaag atatatgata agatcaagaa 3901 gaggctcttg tggggctctg acctgggcac gatgattcgc tgcgcaaggt cgtttggggg 3961 cctgatggat gagatgaaag ctaactgtgt gagattgcct atcagagttg ggatgaacat 4021 gaatgaggat ggacccataa tctttgagaa acattcaaga tacaggtacc attatgatgc 4081 tgactactcc aggtgggact cgacccagca aaggcacgtg ttgggtcttg cacttgaaat 4141 catggttagg ttttcagccg aacctgaatt ggcacaaata gtggctgagg accttttgtc 4201 acccagtgtc gtggacgttg gtgacttcaa aattacaata aacgagggat tgccctctgg 4261 tgttccatgc acatcacaat ggaactcaat tgcccactgg ctgttaacat tgtgtgccat 4321 gtcggaggtc tcaggactct cgccagatgt ggtgcagtca aattcgtgct tctcctttta 4381 tggagacgac gagatagtca gcacagacat aaaattggac ccacaaaaac tgacagacaa 4441 gctgaaagaa tatggactga tcccaacccg gcccgacaag acagaggggc cactcataat 4501 caaagagagc ttagaaggcc tgacatttct aagaaggaac atttgcaggg acccggttgg 4561 atggtatggt caacttgacc agtcatcaat catgaggcag ttgtattgga caaaaggacc 4621 caaccatgaa gaccccaacg aaacaatgat cccacactcc caaagaccag tgcagttaat 4681 gtctctcctt ggtgaagctt ccctacacgg ccctgctttt tacaagaaag ttagcaaatt 4741 ggtcatcact gaattgaggg aaggggggat ggatttctat gtgcccagac aagaaccaat 4801 gttcagatgg atgagattct ctgacctgag cacgtgggag ggcgatcgca atcttgctcc 4861 tgaaggtgtg aatgaagatg gcgtcgaatg acgccgctcc atctaatgat ggtgcagccg 4921 gtctcgtacc agagatcaac aacgagacaa tggctttgga accagtagct ggaggagcaa 4981 ttgctgcccc tctaactgga caaacaaatt tcattgatcc ctggattaga aataattatg 5041 tgcaggcacc taatggtgaa tttacagttt ctcccagaaa ttcccctggt gaaattttgc 5101 tcaatttgga attgggtccc gagctcaacc ctttcttggc ccatttgtct aggatgtata 5161 atggttttgc tggtggcatt gaggttcagg tcatcatggc gggcaacgcc ttcaccgctg 5221 gtaagatcat ctttgcagca gtgcctccca attttcccac agaaaatctt agccctccac 5281 aaatcaccat gtttccccac gtcataatag atgtgagaac cctcgagcct gtcaacattc 5341 ccttgcctga tgttagaaac aacttcttcc attatagcca aaataatgag ccccgcatga 5401 gattgttagc aatgttgtat accccactca gatcaaatgg ttctgcagaa gatgttttta 5461 ctgtgtcgtg tagggtcctc accaaaccct caccagattt tgaattcaac tacttggtcc 5521 ccccaactgt cgagtctagg acaaagccct tcaccatacc aatactcaca attggagaga 5581 tgacaaattc aagattccct gtggccattg atttcctgca caccagcccc accgagaaca 5641 tcgttgttca gccgcaaaac ggcaggtgca cgctggatgg tgaactgctg ggcaccactc 5701 aattggtcac ttctaacatc tgtgccttca gagggtccat ctcaggacat gagaacacag 5761 gagataacca ccaatggcat tttaatatca ccaaccccaa tggcactccg tttgacccca 5821 cagaggatgt gcctgctcca cttggaaccc cagatttcac aggccagctc tatggagtca 5881 tttctcaacg gaacagggag gggacttctg gtgaaaacaa ccagaaggcc aacaggtccc 5941 atgagggagt gatctcaaca ctcgcaccaa gatttacacc aaagctgggg tcggtcatga 6001 ttggcacatg gaccaccgat gacattgaaa accaaccctc cagattcgct ccaattggct 6061 taaatgatga tgacaattat aaccagtggc aattgccaaa ctactccggg gcactcactc 6121 tcaacatggg gttggcctcg tctgttttcc ctacttaccc tggtgaacag cttcttttct 6181 tccgctcata catcccaatg aaggggggat atggtagccc attcatcgac tgccttatac 6241 cccaagagtg ggtctcccat ttctatcaag aatcagcacc ctcacagaca gatgtggctc 6301 tgatcaggta tgtcaacccc gacacaggac gcgtcctgtt cgaggccaaa ttacacagac 6361 aaggatacat caccgtcgcc aagaccggtg acagccccat caatgtacct gctaatggtt 6421 atttcagatt tgattcttgg gttaatcagt tttactctct cgcccccatg ggaactggga 6481 atgggcgcag aaggattcaa taatggcagg agcttttata gcaggattgg ctggtgacat 6541 gttaacaaac actgtagggt ctttagttaa tgcaggggct aatgctatta atcagaaagt 6601 tgattttgag aataataaat atttgcaaaa tgcatcattt gcccatgata aggaaatgtt 6661 acaagcacaa gttgaggcca caaagaaact gcaggccgaa atgattgcca tcaaacaagg 6721 ggttttgacc gcaggcggct tttccccttc tgatgcggcc cgtggggcaa ttaacgcccc 6781 tatgacaaaa gtcttagatt ggaatgggac aagatactgg gcccccaacg ccacctctac 6841 aacctccatg tcaggtggct tcacgggtca aaccgtgcac aggcccacac caaatttcaa 6901 aacgaaccag gcacccaaat ctatgcccag tagtggatcc tcagtaaggt caaacacgac 6961 ccaactttct agtctgagtt cacattcctc tgggtcttcc cgatccagcg ggtccacaac 7021 tgtcagctcc ctaccatcat ccagtaggac tagggactgg gttaatcagc aaaatctcaa 7081 tttggcacca catatgcctg gatccctcag aacagctttt gtcactccac catctagcag 7141 ggcctccagt tcaggcacag tctcaaccgt gcccaaaggt gttttggact cctggacatc 7201 tgcgtttaat acacgcagac agccgctgtt tgcacacctt cggagaaggg gggagtcaaa 7261 tgtttagtga aaagattagt ttaagtttga tttaatttgg atttaaaa //