Typing tool
|
Complete norovirus genomes
MK733204 | GII.27 | ||
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GII.PNA9 |
ORF1: 1..4897 ORF2: 4878..6509 ORF3: 6509..7273LOCUS MK733204 7314 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate Arg15559 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733204 VERSION MK733204.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7314) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7314) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7314) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7314 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg15559" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="26-Sep-2017" /note="genotype: GII" gene <1..4897 /gene="ORF1" CDS <1..4897 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QBR98801.1" /translation="TIPPIPPPPPNGEDIVVTYTKQDDKISGVPTVSTVENSPLHDTA YSVPPLDQREKVDAREPLTGSILEMWDGEIYHYGLYVERGLVLGVHKPPSALSMARIE LTPLSLYWRVVYTPPYLVAPDTLRKLHGESFPYTAFDNNCYMFCCWVLDLNDSWLNRK FVSRTTGFYRPYQDWNRKPLPTMDEGKLKKVANVLLCGLSSFFTRPIKDLISRLKPLN ILNIVSNCDWTFPGVVEALILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEI VPVVLGGIGMVLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLIMKWFFPTKNEV NEMEMVRAIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASP DIVGTINAILARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKRMA STLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLN CDRIENKGKVFDSDTIIITTNLSNPAPLDYVNFEACSRRIDFLVYADSPSVDKAKKDF PGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLH ERLDEFDLQGTELPMYNFDQNKVAAFRRLAADNKYGLMETLKAGNKLKEVKTLEHFKE AVKDIRIKPCRIIYNSTAYELESSGTGRVIVKKVGDQKVQANNELYSALNNLRRARIR YYIKCFQEMIYTLLQIAGAAFVTSRMTQRMNIGRLWAKPEKQVEASVEPPPPPIEDWT ISPTDTVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQD RDRYYEELAIAQATEENFCEEEEIKIRQRIFRPTRKQRREERANLGLVTGSEIRKRNP DDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVV PPNITEAFGVPISQIQVHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRT TGELMPLASRMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRG NEWVVIGVHTAAARGGNTVICATQGPEGEATLEGGDNHGTYCGAPILGPGNAPKLSTK TKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAIL EAAKETICNVLEQTIEPPQKWSYAQACASLDKTTSSGYPHHKKKNDNWNGESFTGVLA DQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYDKIKKRLLWGSDLGTMIRCARSF GGLMDEMKANCVRLPIRVGMNMNEDGPIIFEKHSRYSYHYDADYSRWDSTQQRHVLGL ALEIMVRFSAEPELAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWL LTLCAMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYGLIPTRPD KTEGPLIIKESLEGLTFLRRNICRDPVGWYGQLDQSSIMRQLYWTKGPNHDDPNETMI PHSQRPVQLMSLLGEASLHGPAFYKKVSKLVITELREGGMDFYVPRQEPMFRWMRFSD LSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..802 /gene="ORF1" /product="p48" mat_peptide 803..1900 /gene="ORF1" /product="NTPase" mat_peptide 1901..2425 /gene="ORF1" /product="p22" mat_peptide 2426..2821 /gene="ORF1" /product="VPg" mat_peptide 2822..3364 /gene="ORF1" /product="Pro" mat_peptide 3365..4894 /gene="ORF1" /product="RdRp" gene 4878..6509 /gene="ORF2" CDS 4878..6509 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98799.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGFAGG IEVQVIMAGNAFTAGKIIFAAVPPNFPTENLSPPQITMFPHVIIDVRTLEPVNIPLPD VRNNFFHYSQNNEPRMRLLAMLYTPLRSNGSAEDVFTVSCRVLTKPSPDFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVAIDFLHTSPTENIVVQPQNGRCTLDGELQGTT QLVTSNICAFRGSISGHENAGDNHQWHFNITNPNGTPFDPTEDVPAPLGTPDFTGQLY GVISQRNREGTPGENNQKANRSHEGVISTLAPRFTPKLGSVMIGTWTTNDIENQPSRF APIGLNDDDNYNQWQLPNYSGALTLNMGLASSVFPTYPGEQLLFFRSYIPMKGGYGSP FIDCLIPQEWVSHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGYITVAKTGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" gene 6509..7273 /gene="ORF3" CDS 6509..7273 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98800.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA SFSHDKEMLQAQVEATRKLQAEMIAIKQGVLTAGGFSPSDAARGAINAPMTKVLDWNG TRYWAPNATSTTSMSGGFTGQTVHRPTPNFKTNQAPKSIPSSGSSVRSNTTQLSSLSS HSSGSSRSSGSTTVSSLPSSSRTRDWVDQQNLNLEPHMPGSLRTAFVTPPSSRASSPG TVSTVPKGVLDSWTPAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 caccatcccc ccaatacctc ccccaccacc taatggggag gacattgtcg tcacgtacac 61 aaaacaagac gacaaaatca gtggagttcc caccgtctcc accgttgaaa actctccctt 121 gcatgacacc gcatacagtg ttccaccctt ggaccaaagg gaaaaggttg atgcaaggga 181 gcccctgacg ggttcaatac tcgaaatgtg ggatggtgag atttaccact atgggcttta 241 tgtggaaagg ggtctggtcc tcggcgtgca caagccacca tctgctctga gcatggcacg 301 cattgagttg accccccttt ccctctattg gagggtggtg tataccccgc cctaccttgt 361 tgccccagac accctcagga aactccatgg ggaatccttc ccctacacag catttgacaa 421 taactgttac atgttctgct gttgggtcct ggatcttaac gattcgtggc tcaacaggaa 481 gttcgtgtca aggactacag gattctacag accctaccag gactggaaca ggaagcccct 541 gcccaccatg gatgaaggca aacttaagaa ggtagccaat gtgctactgt gtggtctatc 601 cagcttcttc accaggccca ttaaagacct cataagtagg ctgaaaccac taaacattct 661 caacattgta tccaattgtg attggacatt ccccggtgtt gtagaggctc ttatcctgct 721 tgcagaactc tttggtatct tctggactcc accagacata tctgctttcg tcgcttccct 781 gttgggagac tacgaaatgc agggtcctga ggacattgca accgagatcg tgccagtcgt 841 ccttggtggc attggtatgg tccttggttt caccaaggag aagattggcc gactactcag 901 ctcggccgcg tcatcactcc gggcgtgtag ggagattggc aactacggga tagaggtggt 961 caaattaata atgaaatggt tcttccccac caaaaatgaa gtgaacgaga tggaaatggt 1021 cagggcgata gaggatgcag tgcttgactt tgaggcaata gaaaacaatc acatgacagc 1081 tctactcaag gacaagaata gtttggccac ctttcttaga gccctagaca tggaggagga 1141 gaaggcgcga aaactgtcaa ccaaatccgc atctccagac atagtcggca ccataaatgc 1201 cattctagcc aggatagctg ctgctaggtc cctagtccac agagccaagg aagaaatgtc 1261 atctaggatg cgtcctgttg tcatcatgat ttcgggccga cctggaatag ggaagacaca 1321 tctagcccgg gacttagcca agaggatggc gtccacactc tcgggagacc agagagtggg 1381 ccttgtacca agaaacggcg tcgaccactg ggatgcctac aaaggtgaga gaatcgtcct 1441 ttgggatgat tatggcatga gtaaccccgt ggcggacgcc ctgcgcctcc aggagcttgc 1501 cgacacctgc cctctaacgc tcaactgtga taggatagag aacaagggga aggtgtttga 1561 cagtgacacc ataatcataa ccaccaactt gtcaaacccc gccccacttg actatgtgaa 1621 ctttgaggcc tgttcacgcc gcattgactt ccttgtttat gcggactctc cttcagttga 1681 caaggcaaag aaagacttcc ccggccaacc agacatgtgg aaagatgcat tcaaacctga 1741 cttctcgcac ataaaattac aattggcacc gcagggagga ttcgacaaga acgggaacac 1801 cccacatggc aagggagtga tgaagaccct gaccacgcac tccctcatag ccagggccac 1861 cggcttgctg catgaaagat tggatgaatt cgatttacag gggacagagc taccaatgta 1921 caactttgac caaaacaaag tggccgcatt caggaggcta gcggccgaca acaagtacgg 1981 cctaatggaa accttaaagg cgggcaacaa gttgaaggag gtcaagaccc tagaacactt 2041 caaggaggct gtcaaggaca tccgcataaa accatgcagg ataatctaca attccaccgc 2101 ttacgaattg gagtcaagcg ggactgggag agtcatcgtc aagaaagtgg gtgaccagaa 2161 ggtgcaagcc aataatgaac tctactctgc cctcaacaat ctgcgcagag ctaggatcag 2221 gtactacatc aagtgtttcc aggagatgat ctacacactc ctccaaatcg ctggtgcggc 2281 ttttgtaaca tcaagaatga cacagaggat gaacattggc agactgtggg ccaaaccgga 2341 aaagcaagtg gaagcctctg tagagccccc cccccctcct attgaagact ggaccataag 2401 cccaactgac acagtccagg aaggcaagaa gggcaaaaac aagagcggta gaggcaagaa 2461 acataccgcc ttctctagta aaggtctcag tgatgaagag tacgacgagt acaaaaggat 2521 cagagaggag cgccagggga aatactctat agaggagtat ctccaggaca gagaccggta 2581 ctatgaagaa ttggccatag cccaagcaac agaagaaaat ttctgtgagg aggaagagat 2641 caaaataaga caaaggattt tcaggccaac caggaaacaa cgcagagaag agagggccaa 2701 tctgggcctg gtcacaggga gtgaaattag gaagaggaac cctgacgact tcaagccaag 2761 aggaaagctg tgggccgatg atgaccgcag tgtcaactac aatgagaaaa tagactttga 2821 ggcccctccc agtctgtggt ccagaatagt caactttggc tcggggtggg gtttctgggt 2881 ctcgtccaac ctgttcatca catcaacgca tgttgtgcca ccaaacatca cggaagcttt 2941 tggggtccca ataagccaaa tccaagtcca caggagcgga gagttctgca aaatgaggtt 3001 ccccaaggcc atcaggcctg atgtttctgg gatgattctt gaagaaggtg cgccagaggg 3061 gacggttgtg accatactga tcaaaaggac aaccggtgag ctcatgccat tagcatcccg 3121 tatgggcacc catgccacca tgaaaataca gggaagaatg attggtggcc aaatgggaat 3181 gctcctcaca gggtccaacg ccaaaaacat ggatcttggc accatcccag gggactgtgg 3241 ctgcccctat gtctacaaga ggggcaatga gtgggttgtg atcggggtac acaccgctgc 3301 ggccagaggg ggcaacacgg tgatatgtgc aacacaaggg cccgaaggtg aggccacact 3361 tgaaggagga gacaaccatg gaacctactg tggtgcacca atcttgggac caggaaatgc 3421 accaaaactc agcaccaaaa ccaaattttg gagatcctcc aatgccccac ttccccctgg 3481 cacgtatgag cctgcctacc tcggtgggaa ggatcctaga gtcaagggtg gcccatcact 3541 acagcaagtc atgagagaac aactcaagcc attcactgcc ccgcgcggga agccacctag 3601 gccggcaatc ttggaagctg caaaggagac catctgcaac gtgctcgagc aaaccatcga 3661 accacctcaa aaatggtctt acgcgcaagc ctgcgcttcc ctggacaaga ccacgtcaag 3721 tggctacccc catcataaga aaaagaatga caactggaat ggtgaatctt ttactggtgt 3781 tttggccgat caggcatcaa aagcaaacct catgtttgaa cagggaaaac acatgcaacc 3841 cgtgtacaca gctgcactca aggatgagct tgtaaagacc agtaagatat atgataagat 3901 caagaagagg ctcttgtggg gctctgacct gggcacgatg attcgttgcg caaggtcgtt 3961 tgggggcctg atggatgaga tgaaagctaa ctgtgtgaga ttgcctatca gagttgggat 4021 gaacatgaat gaggatggac ccataatctt tgagaaacat tcaagataca gttaccatta 4081 tgatgctgac tactccaggt gggactcgac ccagcaaagg cacgtgttgg gtcttgcact 4141 tgaaatcatg gttaggtttt cagccgaacc tgaattggca caaatagtgg ctgaggacct 4201 tttgtcaccc agtgtcgtgg acgttggtga cttcaaaatt acaataaacg agggattgcc 4261 ctctggtgtt ccatgcacat cacaatggaa ctcaatcgcc cactggctgt taacattgtg 4321 tgccatgtcg gaggtctcag gactctcgcc agatgtggtg cagtcaaatt cgtgcttctc 4381 cttctatgga gacgacgaga tagtcagcac agacataaaa ttggacccac aaaaactgac 4441 agacaagctg aaagaatatg gactgatccc aacccgaccc gacaagacag aggggccact 4501 cataatcaaa gagagcttag aaggcctgac atttctaaga agaaacatat gcagggaccc 4561 ggttggatgg tatggtcaac ttgaccagtc atcaatcatg aggcagttgt attggacaaa 4621 aggacccaac catgatgacc ccaacgaaac gatgatccca cactcacaaa gaccagtgca 4681 gttaatgtct ctccttggtg aagcttccct acacggccct gctttttaca agaaagttag 4741 caaattggtc atcactgaat tgagggaagg ggggatggat ttctatgtgc ccagacaaga 4801 accaatgttc agatggatga gattctctga cttgagcacg tgggagggtg atcgcaatct 4861 tgctcccgaa ggtgtgaatg aagatggcgt cgaatgacgc cgctccatct aatgatggtg 4921 cagccggtct cgtaccagag atcaacaacg agacaatggc tttggaacca gtagctggag 4981 gagcaatcgc tgcccctcta actggacaaa caaatttcat tgatccctgg attagaaata 5041 attatgtgca ggcacctaat ggtgaattta cagtttctcc cagaaattcc cctggtgaaa 5101 ttttgctcaa cttggaattg ggtcccgagc tcaacccttt cttggcccat ttgtctagga 5161 tgtataatgg ttttgctggc ggcattgagg ttcaggtcat catggcgggc aacgccttca 5221 ccgctggtaa gatcatcttt gcagcagtgc ctcccaattt tcccacagaa aatcttagcc 5281 ctccacaaat caccatgttt ccccacgtca taatagatgt gagaaccctc gagcctgtca 5341 acattccctt gcctgatgtt agaaataatt tcttccatta tagccaaaat aatgagcccc 5401 gcatgagatt gttagcaatg ttgtataccc cactcagatc aaatggttct gcagaagatg 5461 ttttcactgt gtcgtgtagg gtcctcacca aaccctcacc agattttgaa ttcaactact 5521 tggtcccccc aactgtcgag tctaggacaa agcccttcac cataccaata ctcacaattg 5581 gagagatgac aaattcaaga ttccctgtgg ccattgattt cctgcacacc agccccactg 5641 agaacatcgt tgttcagccg caaaacggca ggtgcacgct ggatggtgaa ctgcagggca 5701 ccactcaatt ggtcacttct aacatctgtg ccttcagagg gtccatctca ggacatgaga 5761 atgcaggaga taaccaccaa tggcatttta atatcaccaa ccccaatggc actccgtttg 5821 accccacaga ggatgtgcct gctccacttg gaaccccaga tttcacaggc cagctctatg 5881 gagtcatttc tcaacggaac agggagggga ctcctggtga aaacaaccag aaggccaaca 5941 ggtcccatga gggagtgatc tcaacactcg caccaagatt tacaccaaag ctggggtcgg 6001 tcatgattgg cacatggacc accaatgaca ttgaaaacca accctccaga ttcgctccaa 6061 ttggcttaaa tgatgatgac aattacaacc agtggcaatt gccaaactac tccggggcac 6121 tcactctcaa catggggttg gcctcgtctg ttttccctac ttaccctggt gaacagcttc 6181 ttttcttccg ctcatacatc ccaatgaagg ggggatatgg cagcccattc atcgactgcc 6241 ttatacccca agagtgggtc tcccatttct atcaagaatc agcaccctca cagacagatg 6301 tggctctgat caggtatgtc aaccccgaca caggacgcgt cctgttcgag gccaaattgc 6361 acagacaagg atacatcacc gtcgccaaga ccggtgacag ccccatcaat gtacctgcta 6421 atggttattt cagatttgat tcttgggtta atcagtttta ctctctcgcc cccatgggaa 6481 ctgggaatgg gcgcagaagg attcaataat ggcaggagct tttatagcag gattggctgg 6541 tgacatgtta acaaatactg tagggtcttt agttaatgca ggggctaatg ctattaatca 6601 gaaagttgat tttgagaata ataaatattt gcaaaatgca tcattttccc atgataagga 6661 gatgttacaa gcacaagttg aggccacaag aaaactgcag gccgaaatga ttgccatcaa 6721 acaaggggtt ttgaccgcag gcggcttttc cccttctgat gcggcccgtg gggcaattaa 6781 cgcccctatg acaaaagtct tagattggaa tgggacaaga tactgggccc ccaacgccac 6841 ctctacaacc tctatgtcag gtggcttcac gggtcaaacc gtgcacaggc ccacaccaaa 6901 tttcaaaaca aaccaggcgc ccaaatctat acccagtagt ggatcctcag taaggtcaaa 6961 cacgacccaa ctttctagtc tgagttcaca ttcctctggg tcttcccgat ccagcgggtc 7021 cacaactgtc agctccctac catcatccag taggactagg gactgggttg atcagcaaaa 7081 tctcaatttg gaaccacata tgcctggatc cctcagaaca gcttttgtca ctccaccatc 7141 tagcagggcc tccagtccag gcacagtctc aaccgtgccc aaaggtgttt tggactcctg 7201 gacacctgcg tttaacacac gcagacagcc gctgtttgca caccttcgga gaagggggga 7261 gtcaaatgtt tagtgaaaag attagtttaa atttgattta atttggattt aaag //