Typing tool
|
Complete norovirus genomes
MK733203 | GII.27 | ||
---|---|---|---|
GII.PNA9 |
ORF1: 1..4896 ORF2: 4877..6508 ORF3: 6508..7272LOCUS MK733203 7302 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate Arg15482 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733203 VERSION MK733203.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7302) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7302) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7302) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7302 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg15482" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="01-Aug-2017" /note="genotype: GII" gene <1..4896 /gene="ORF1" CDS <1..4896 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QBR98798.1" /translation="TIPPIPPPPPNGEDIVVTYTKQDDKISGVPTVSTVENSPLHDTA YSVPPLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVERGLVLGVHKPPSALSMARIE LTPLSLYWRVVYTPPYLVAPDTLRKLHGESFPYTAFDNNCYMFCCWVLDLNDSWLNRK FVSRTTGFYRPYQDWNRKPLPTMDEGKLKKVANVLLCGLSSLFTRPIKDLISRLKPLN ILNIVSNCDWTFPGVVEALILLVELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEI VPVVLGGIGMVLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLIMKWFFPTKNEV NEMEMVRAIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASP DIVGTINAILARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKRMA STLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLN CDRIENKGKVFDSDTIIITTNLSNPAPLDYVNFEACSRRIDFLVYADSPSVDKAKKDF PGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLH ERLDEFDLQGTELPMYNFDQNKVAAFRRLAADNKYGLMETLKAGNKLKEVKTLEHFKE AVKDIRIKPCRIIYNSTAYELESSGTGRVIVKKMGDQKVQANNELYSALNNLRRARIR YYIKCFQEMIYTLLQIAGAAFVTSRMTQRMNIGRLWAKPEKQVETSVEPPPPPIEDWT ISPTDTVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQD RDRYYEELAIAQATEENFCEEEEIKIRQRIFRPTRKQRREERANLGLVTGSEIRKRNP DDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVV PPNITEAFGVSISQIQVHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRT TGELMPLASRMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRG NEWVVIGVHTAAARGGNTVICATQGPEGEATLEGGDNHGTYCGAPILGPGNAPKLSTK TKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAIL EAAKETICNVLEQTIEPPQKWSYAQACASLDKTTSSGYPHHKKKNDNWNGESFTGVLA DQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYDKIKKRLLWGSDLGTMIRCARSF GGLMDEMKANCVRLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRHVLGL ALEIMVRFSAEPELAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWL LTLCAMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYGLIPTRPD KTEGPLIIKESLEGLTFLRRNICRDPVGWYGQLDQSSIMRQLYWTKGPNHEDPNETMI PHSQRPVQLMSLLGEASLHGPAFYKKVSKLVITELREGGMDFYVPRQEPMFRWMRFSD LSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..801 /gene="ORF1" /product="p48" mat_peptide 802..1899 /gene="ORF1" /product="NTPase" mat_peptide 1900..2424 /gene="ORF1" /product="p22" mat_peptide 2425..2820 /gene="ORF1" /product="VPg" mat_peptide 2821..3363 /gene="ORF1" /product="Pro" mat_peptide 3364..4893 /gene="ORF1" /product="RdRp" gene 4877..6508 /gene="ORF2" CDS 4877..6508 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98796.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGFAGG IEVQVIMAGNAFTAGKIIFAAVPPNFPTENLSPPQITMFPHVIIDVRTLEPVNIPLPD VRNNFFHYNQNNEPRMRLLAMLYTPLRSNGSAEDVFTVSCRVLTKPSPDFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVAIDFLHTSPTENIVVQPQNGRCTLDGELQGTT QLVTSNICAFRGSISGHENTGDNHQWHFNVTNPNGTPFDPTEDVPAPLGTPDFTGQLY GVISQRNREGNPGDNNQKANRSHEGVISTLAPRFTPKLGSVMIGTWTTNDIENQPSRF APIGLNDDDNYNQWQLPNYSGALTLNMGLASSVFPTYPGEQLLFFRSYIPMKGGYGSP FIDCLIPQEWVSHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGYITVAKTGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" gene 6508..7272 /gene="ORF3" CDS 6508..7272 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98797.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA SFAHDKEMLQAQVEATKKLQAEMIAIKQGVLTAGGFSPSDAARGAINAPMTKVLDWNG TRYWAPNATSTTSMSGGFTGQTVHRPTPNFKTNQAPKSIPSSGSSVRSNTTQLSSLSS HSSGSSRSSGSTTVSSLPSSSRTRDWVNQQNLNLEPHMPGSLRTAFVTPPSSRASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 accatccccc caatacctcc cccaccacct aatggggagg acattgtcgt cacgtacaca 61 aaacaagacg acaaaatcag tggagttccc accgtctcca ccgttgaaaa ctctcccttg 121 catgacaccg catacagtgt tccacccttg gaccaaaggg aaaaagttga tgcaaaggag 181 cccctgacgg gttcaatact cgaaatgtgg gatggtgaga tttaccacta tgggctttat 241 gtggaaaggg gtctggtcct cggcgtgcac aagccaccat ctgctctgag catggcacgc 301 attgagttaa cccccctttc cctctattgg agggtggtgt ataccccgcc ctaccttgtt 361 gccccagaca ccctcaggaa actccatggg gaatccttcc cctacacagc atttgacaat 421 aactgttaca tgttctgctg ttgggtcctg gatcttaacg attcgtggct caacaggaag 481 ttcgtgtcaa ggactacagg attctacaga ccctaccagg actggaacag gaagcccctg 541 cccaccatgg atgaaggcaa actcaagaag gtagccaatg tgttactgtg tggtctatcc 601 agcctcttca ccaggcccat taaagacctc ataagtaggc tgaaaccact aaacattctc 661 aacattgtat ccaattgtga ttggacattc cccggtgttg tagaggccct tatcctgctt 721 gtagaactct ttggtatctt ctggactcca ccagacatat ctgctttcgt cgcttccctg 781 ttgggagact acgaaatgca gggtcctgag gacattgcaa ccgagatcgt gccagtcgtc 841 cttggtggca ttggtatggt ccttggtttc accaaggaga agattggccg actactcagc 901 tcggctgcgt catcactccg ggcgtgtagg gagattggca actacgggat agaggtggtc 961 aaattaataa tgaaatggtt cttccccacc aaaaatgaag tgaacgagat ggaaatggtc 1021 agggcgatag aggatgcagt gcttgacttt gaggcaatag aaaacaatca catgacagct 1081 ctactcaagg acaagaatag tttggccacc tttcttagag ccctagacat ggaggaggag 1141 aaggcgcgaa aactgtcaac caaatccgca tctccagaca tagtcggcac cataaatgcc 1201 attctagcca ggatagctgc tgctaggtcc ctagtccaca gagccaagga agaaatgtca 1261 tctaggatgc gtcctgttgt catcatgatt tcgggccgac ctggaatagg gaagacacat 1321 ctagcccggg acttagccaa gaggatggcg tccacactct cgggagacca gagagtgggc 1381 cttgtaccaa gaaacggcgt cgaccactgg gatgcctaca aaggtgagag aatcgtcctt 1441 tgggatgatt atggcatgag taaccccgtg gcggacgccc tgcgcctcca ggagcttgcc 1501 gacacctgcc ctctgacact caactgtgat aggatagaga acaaggggaa ggtgtttgac 1561 agtgacacca taattataac caccaacttg tcaaaccccg ccccacttga ctatgtgaac 1621 tttgaggcct gttcacgccg cattgacttc cttgtttatg cggactctcc ttcagttgac 1681 aaggcaaaga aagacttccc cggccaacca gacatgtgga aagatgcatt caaacctgac 1741 ttctcgcaca taaaattaca attggcaccg cagggaggat tcgacaagaa cgggaacacc 1801 ccacatggca agggagtgat gaagaccctg accacgcatt ccctcatagc cagggccacc 1861 ggcttgctgc atgaaagatt ggatgaattc gatttacagg ggacagagct accaatgtac 1921 aactttgacc aaaacaaagt ggccgcattc aggaggctag cggccgacaa caagtacggc 1981 ctaatggaaa ccttaaaggc gggcaacaag ttgaaggagg tcaagaccct agaacacttc 2041 aaggaggctg tcaaggacat ccgcataaaa ccatgcagga taatctacaa ttccaccgct 2101 tacgaattgg agtcaagcgg gactgggaga gtcatcgtca agaaaatggg tgaccagaag 2161 gtgcaggcca ataatgaact ctactctgcc ctcaacaatc tgcgcagagc taggatcagg 2221 tactacatca agtgtttcca ggagatgatc tacacactcc tccaaatcgc tggtgcggct 2281 tttgtaacat caagaatgac acagaggatg aacattggca gactgtgggc caaaccggaa 2341 aagcaagtgg aaacctctgt agagcccccc ccccctccta ttgaagactg gaccataagc 2401 ccaactgaca cagtccagga aggcaagaag ggcaaaaaca agagcggtag aggcaagaag 2461 catactgcct tctctagtaa aggtctcagt gatgaagagt acgacgagta caaaaggatc 2521 agagaggagc gccaggggaa atactctata gaggagtatc tccaggacag agaccggtac 2581 tatgaagaat tggccatagc ccaagcaaca gaagaaaatt tctgtgagga ggaagagatc 2641 aaaataagac aaaggatttt caggccaacc aggaaacaac gcagagaaga gagggccaat 2701 ctgggcctgg tcacagggag tgaaattagg aagaggaacc ctgacgactt caagccaaga 2761 ggaaagctgt gggccgatga tgaccgcagt gtcaactaca atgagaaaat agactttgag 2821 gcccctccca gtctgtggtc cagaatagtc aactttggct cggggtgggg tttctgggtc 2881 tcgtccaacc tgttcatcac atcaacgcat gttgtgccac caaacatcac ggaagctttt 2941 ggggtctcaa taagccaaat ccaagtccac aggagcggag agttctgcaa aatgaggttc 3001 cccaaggcca tcaggcctga tgtttctggg atgattcttg aagaaggtgc gccagagggg 3061 acggttgtaa ccatactgat caaaaggaca accggtgagc tcatgccatt agcatcccgc 3121 atgggcaccc atgccaccat gaaaatacag ggaagaatga ttggtggcca aatgggaatg 3181 ctcctcacag ggtccaacgc caaaaacatg gaccttggca ccatcccagg ggactgtggc 3241 tgcccctatg tctacaagag gggcaatgag tgggttgtga tcggggtaca caccgctgcg 3301 gccagagggg gcaacacggt gatatgtgca acacaagggc ccgaaggtga ggccacactt 3361 gaaggaggag acaaccatgg aacctactgt ggtgcaccaa tcttgggacc aggaaatgca 3421 ccaaaactca gcaccaaaac caaattttgg agatcctcca atgccccact tccccctggc 3481 acgtatgagc ctgcctacct cggtgggaag gatcctagag tcaagggtgg cccatcacta 3541 cagcaagtca tgagagaaca actcaagcca ttcactgccc cgcgcgggaa gccacctagg 3601 ccggcaatct tggaagctgc aaaggagact atctgcaacg tgctcgagca aaccatcgaa 3661 ccacctcaaa aatggtctta cgcgcaagcc tgcgcctccc tggacaagac cacgtcaagt 3721 ggctaccccc atcataagaa aaagaatgac aactggaatg gtgaatcttt tactggtgtt 3781 ttggccgatc aggcatcaaa agcaaacctc atgtttgaac agggaaaaca catgcaaccc 3841 gtgtacacag ctgcactcaa ggatgagctt gtaaagacta gtaagatata tgataagatc 3901 aagaagaggc tcttgtgggg ctctgacctg ggcacgatga ttcgctgcgc aaggtcgttt 3961 gggggcctga tggatgagat gaaagctaac tgtgtgagat tgcctatcag agttgggatg 4021 aacatgaatg aggatggacc cataatcttt gagaaacatt caagatacag gtaccattat 4081 gatgctgact actccaggtg ggactcgacc cagcaaaggc acgtgttggg tcttgcactt 4141 gaaatcatgg ttaggttttc agccgaacct gaattggcac aaatagtggc tgaggacctt 4201 ttgtcaccca gtgtcgtgga cgttggtgac ttcaaaatta caataaacga gggattgccc 4261 tctggtgttc catgcacatc acaatggaac tcaattgccc actggctgtt aacattgtgt 4321 gccatgtcgg aggtctcagg actctcgcca gatgtggtgc agtcaaattc gtgcttctcc 4381 ttctatggag acgacgagat agtcagcaca gacataaaat tggacccaca aaaactgaca 4441 gacaagctga aagaatatgg actgatccca acccggcccg acaagacaga ggggccactc 4501 ataatcaaag agagcttaga aggcctgaca tttctaagaa gaaacatatg cagggacccg 4561 gttggatggt atggccaact tgaccagtca tcaatcatga ggcagttgta ttggacaaaa 4621 ggacccaacc atgaagaccc caacgaaaca atgatcccac actcccaaag accagtgcag 4681 ttaatgtctc tccttggtga agcttcccta cacggccctg ctttttacaa gaaagttagc 4741 aaattggtca tcactgaatt gagggaaggg gggatggatt tctatgtgcc cagacaagaa 4801 ccaatgttca gatggatgag attctctgac ttgagcacgt gggagggcga tcgcaatctt 4861 gctcccgaag gtgtgaatga agatggcgtc gaatgacgcc gctccatcta atgatggtgc 4921 agccggtctc gtaccagaga tcaacaacga gacaatggct ttggaaccag tagctggagg 4981 agcaatcgct gcccctctaa ctggacaaac aaattttatt gatccctgga ttagaaataa 5041 ttatgtgcag gcacctaatg gtgaatttac agtttctccc agaaattccc ctggtgaaat 5101 tttgctcaac ttggaattgg gtcccgagct caaccctttc ttggcccatt tgtctaggat 5161 gtataatggt tttgctggcg gcattgaggt tcaggtcatc atggcgggca acgccttcac 5221 cgctggtaag atcatctttg cagcagtgcc tcccaatttt cccacagaaa atcttagccc 5281 tccacaaatc accatgtttc cccacgtcat aatagatgtg agaaccctcg agcctgtcaa 5341 cattcccttg cctgatgtta gaaacaattt cttccattat aaccaaaata atgagccccg 5401 catgagattg ttagcaatgt tgtatacccc actcagatca aatggttctg cagaagatgt 5461 tttcactgtg tcgtgtaggg tcctcaccaa accctcacca gattttgaat tcaactactt 5521 ggtcccccca actgtcgagt ctaggacaaa gcccttcacc ataccaatac tcacaattgg 5581 agagatgaca aattcaagat tccctgtggc cattgatttc ctgcacacca gccccactga 5641 gaacatcgtt gttcagccgc aaaacggcag gtgcacgctg gatggtgaac tgcagggcac 5701 cactcaattg gtcacttcta acatctgtgc cttcagaggg tccatctcag gacatgagaa 5761 tacaggagat aaccaccaat ggcattttaa tgtcaccaac cccaatggca ctccgtttga 5821 ccccacagag gatgtgcctg ctccacttgg aaccccagat ttcacaggcc agctctatgg 5881 agtcatttct caacggaaca gggaggggaa tcctggtgat aacaaccaga aggccaacag 5941 gtcccatgag ggagtgatct caacactcgc accaagattt acaccaaagc tggggtcggt 6001 catgattggc acatggacca ccaatgacat tgaaaaccaa ccctccagat tcgctccaat 6061 tggcttaaat gatgatgaca attataacca gtggcaattg ccaaactact ccggggcact 6121 cactctcaac atggggttgg cctcgtctgt tttccctact taccctggtg aacagcttct 6181 tttcttccgc tcatatatcc caatgaaggg gggatatggt agcccattca tcgactgcct 6241 tataccccaa gagtgggtct cccatttcta tcaagaatca gcaccctcac agacagatgt 6301 ggctctgatc aggtatgtca accccgacac aggacgcgtc ctgttcgagg ccaaattgca 6361 cagacaagga tacatcaccg tcgccaagac cggtgacagc cccatcaatg tacctgctaa 6421 tggttatttc agatttgatt cttgggttaa tcagttttac tctctcgccc ccatgggaac 6481 tgggaatggg cgcagaagga ttcaataatg gcaggagctt ttatagcagg attggctggt 6541 gatatgttaa caaacactgt agggtcttta gttaatgcag gggctaatgc tattaatcag 6601 aaagttgatt ttgagaataa taaatatttg caaaatgcat catttgccca tgataaggag 6661 atgttacaag cacaagttga ggccacaaag aaactgcagg ccgaaatgat tgccatcaaa 6721 caaggggttt tgaccgcagg cggcttttcc ccttctgatg cggcccgtgg ggcaattaac 6781 gcccctatga caaaagtctt agattggaat gggacaagat actgggcccc caacgccacc 6841 tctacaacct ctatgtcagg tggcttcacg ggtcaaaccg tgcacaggcc cacaccaaat 6901 ttcaaaacaa accaggcacc caaatctata cccagtagtg gatcctcagt aaggtcaaac 6961 acgacccaac tttctagtct gagttcacat tcctctgggt cttcccgatc cagcgggtcc 7021 acaactgtca gctccctacc atcatccagt aggactaggg actgggttaa tcagcaaaat 7081 ctcaatttgg aaccacatat gcctggatcc ctcagaacag cttttgtcac tccaccatct 7141 agcagggcct ccagttcagg cacagtctca accgtgccca aaggtgtttt ggactcctgg 7201 acatctgcgt ttaacacacg cagacagccg ctgtttgcac accttcggag aaggggggag 7261 tcaaatgttt agtgaaaaga ttagtttaaa tttgatttaa tt //