Typing tool
|
Complete norovirus genomes
MK733202 | GII.27 | ||
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GII.PNA9 |
ORF1: 1..4903 ORF2: 4884..6515 ORF3: 6515..7279LOCUS MK733202 7314 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate Arg15465 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733202 VERSION MK733202.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7314) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7314) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7314) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7314 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg15465" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Argentina" /collection_date="04-Jul-2017" /note="genotype: GII" gene <1..4903 /gene="ORF1" CDS <1..4903 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QBR98795.1" /translation="KTTIPPIPPPPPNGEDIVVTYTKQDDKISGVPTVFTVENSPLHD TAYSVPPLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVERGLVLGVHKPPSALSMAR IELTPLSLYWRVVYTPPYLVAPDTLRKLHGESFPYTAFDNNCYMFCCWVLDLNDSWLN RKFVSRTTGFYRPYQDWNRKPLPTMDEGKLKKVANVLLCGLSSLFTRPIKDLISRLKP LNILNIVSNCDWTFPGVVEALILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIAT EIVPVVLGGIGMVLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLIMKWFFPTKN EVNEMEMVRAIEDAVLDFEAIENNHMTALLKDKNNLATFLRALDMEEEKARKLSTKSA SPDIVGTINAILARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKR MASTLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLT LNCDRIENKGKVFDSDTIIITTNLSNPAPLDYVNFEACSRRIDFLVYADSPSVDKAKK DFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGL LHERLDEFDLQGTELPMYNFDQNKVAAFRRLAADNKYGLMETLKAGNKLKEVKTLEHF KEAVKDIRIKPCRIIYSSTAYELESSGTGRVIVKKVGDQKVQANNELYSALNNLRRAR IRYYIKCFQEMIYTLLQIAGAAFVTSRMTQRMNIGRLWAKPEKQVETSVEPPPPPIED WTISPTDTVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYL QDRDRYYEELAIAQATEENFCEEEEIKIRQRIFRPTRKQRREERANLGLVTGSEIRKR NPDDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTH VVPPNITEAFGVPISQIQVHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIK RTTGELMPLASRMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYK RGNEWVVIGVHTAAARGGNTVICATQGPEGEATLEGGDNHGTYCGAPILGPGNAPKLS TKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPA ILEAAKETICNVLEQTIEPPQKWSYAQACASLDKTTSSGYPHHKKKNDNWNGESFTGV LADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYDKIKKRLLWGSDLGTMIRCAR SFGGLMDEMKANCVRLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRHVL GLALEIMVRFSAEPELAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAH WLLTLCAMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLKEYGLIPTR PDKTEGPLIIKESLEGLTFLRRNICRDPVGWYGQLDQSSIMRQLYWTKGPNHEDPNET MIPHSQRPVQLMSLLGEASLHGPAFYKKVSKLVITELREGGMDFYVPRQEPMFRWMRF SDLSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..808 /gene="ORF1" /product="p48" mat_peptide 809..1906 /gene="ORF1" /product="NTPase" mat_peptide 1907..2431 /gene="ORF1" /product="p22" mat_peptide 2432..2827 /gene="ORF1" /product="VPg" mat_peptide 2828..3370 /gene="ORF1" /product="Pro" mat_peptide 3371..4900 /gene="ORF1" /product="RdRp" gene 4884..6515 /gene="ORF2" CDS 4884..6515 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98793.1" /translation="MKMASNDAAPSNDGAAGLVPEINNETMALEPVAGGAIAAPLTGQ TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGFAGG IEVQVIMAGNAFTAGKIIFAAVPPNFPTENLSPPQITMFPHVIIDVRTLEPVNIPLPD VRNNFFHYSQNNEPRMRLLAMLYTPLRSNGSAEDVFTVSCRVLTKPSPDFEFNYLVPP TVESRTKPFTIPILTIGEMTNSRFPVAIDFLHTSPTENIVVQPQNGRCTLDGELLGTT QLVTSNICAFRGSISGHENTGDNHQWHFNITNPNGTPFDPTEDVPAPLGTPDFTGQLY GVISQRNREGTPGENNQKANRSHEGVISTLAPRFTPKLGSVMIGTWTTNDIENQPSRF APIGLNDDDNYNQWQLPNYSGALTLNMGLASSVFPTYPGEQLLFFRSYIPMKGGYGSP FIDCLIPQEWVSHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGYITVAKTGDS PINVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" gene 6515..7279 /gene="ORF3" CDS 6515..7279 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98794.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA SFAHDKEMLQAQVEATKKLQAEMIAIKQGVLTAGGFSPSDAARGAINAPMTKVLDWNG TRYWAPNATSTTSMSGGFTGQTVHRPTPNFKTNQAPKSIPSSGSSVRSNTTQLSSLSS HSSGSSRSSGSTTVSSLPSSSRTRDWVNQQNLNLEPHMPGSLRTAFVTPPSSRASSSG TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 caaaaccacc atccccccaa tacctccccc accacctaat ggggaggaca ttgtcgtcac 61 gtacacaaaa caagacgaca aaatcagtgg agttcccacc gtcttcaccg ttgaaaactc 121 tcccttgcat gacaccgcat acagtgttcc acccttggac caaagggaaa aggttgatgc 181 aaaggagccc ctgacgggtt caatactcga aatgtgggat ggtgagattt accactatgg 241 gctttatgtg gaaaggggtc tggtcctcgg cgtgcacaag ccaccatctg ctctgagcat 301 ggcacgcatt gagttgaccc ccctttccct ctattggagg gtggtgtata ccccgcccta 361 ccttgttgcc ccagacaccc tcaggaaact ccatggggaa tccttcccct acacagcatt 421 tgacaacaac tgttacatgt tctgctgttg ggtcctggat cttaacgatt cgtggctcaa 481 caggaagttc gtgtcaagga ctacaggatt ctacagaccc taccaggact ggaacaggaa 541 gcccctgccc accatggatg aaggcaaact caagaaggta gccaatgtgc tactgtgtgg 601 tctatccagc ctcttcacca ggcccattaa agacctcata agtaggctga aaccactaaa 661 cattctcaac attgtatcta attgtgattg gacattcccc ggtgttgtag aggctcttat 721 cctgcttgca gaactctttg gtatcttctg gactccacca gacatatctg ctttcgtcgc 781 ttccctgttg ggagactacg aaatgcaggg tcctgaggac attgcaaccg agatcgtgcc 841 agtcgttctt ggtggcattg gtatggtcct tggtttcacc aaggagaaga ttggccgact 901 actcagctcg gctgcgtcat cactccgggc gtgtagggag attggcaact acgggataga 961 ggtggtcaaa ttaataatga aatggttctt ccccaccaaa aatgaagtga acgagatgga 1021 aatggtcagg gcgatagagg atgcagtgct tgactttgag gcaatagaaa acaatcacat 1081 gacagctcta ctcaaggaca agaataattt ggccaccttt cttagagccc tagacatgga 1141 ggaggagaag gcgcgaaaac tgtcaaccaa atccgcatct ccagacatag tcggcaccat 1201 aaatgccatt ctagccagga tagctgctgc taggtcccta gtccacagag ccaaggaaga 1261 aatgtcatcc aggatgcgtc ctgttgtcat catgatttcg ggccgacctg gaatagggaa 1321 gacacatcta gcccgggact tagccaagag gatggcgtcc acactctcgg gagaccagag 1381 agtgggcctt gtaccaagaa acggcgtcga ccactgggat gcctacaaag gtgagagaat 1441 cgtcctttgg gatgattatg gcatgagtaa ccccgtggcg gacgccctgc gcctccagga 1501 gcttgccgac acctgccctc tgacactcaa ctgtgatagg atagagaaca aggggaaggt 1561 gtttgacagt gacaccataa tcataaccac caacttgtca aaccccgccc cacttgacta 1621 tgtgaacttt gaggcctgtt cacgccgcat tgacttcctt gtttatgcgg actctccttc 1681 agttgacaag gcaaagaaag acttccccgg ccaaccagac atgtggaaag atgcattcaa 1741 acctgacttc tcgcacataa aattacaatt ggcaccgcag ggaggattcg acaagaacgg 1801 gaacacccca catggcaagg gagtgatgaa gaccctgacc acgcactccc tcatagccag 1861 ggccaccggc ttgctgcatg aaagattgga tgaattcgat ttacagggga cagagctacc 1921 aatgtacaac tttgaccaaa acaaagtggc cgcattcagg aggctagcgg ccgacaacaa 1981 gtacggccta atggaaacct taaaggcggg caacaagttg aaggaggtca agaccctaga 2041 acacttcaag gaggctgtca aggacatccg cataaaacca tgcaggataa tctacagttc 2101 caccgcttac gaattggagt caagcgggac tgggagagtc atcgtcaaga aagtgggtga 2161 ccagaaggtg caggccaata atgaactcta ctctgccctc aacaatctgc gcagagctag 2221 gatcaggtac tacatcaagt gtttccagga gatgatctac acactcctcc aaatcgctgg 2281 tgcggctttt gtaacatcaa gaatgacaca gaggatgaac attggcagac tgtgggccaa 2341 accggaaaag caagtggaaa cctctgtaga gccccccccc cctcctattg aagactggac 2401 cataagccca actgacacag tccaggaagg caagaagggc aaaaacaaga gcggtagagg 2461 caagaaacat accgccttct ctagtaaagg tctcagtgat gaagagtacg acgagtacaa 2521 aaggatcaga gaggagcgcc aggggaaata ctctatagag gagtatctcc aggacagaga 2581 ccggtactat gaagaattgg ccatagccca agcaacagaa gaaaatttct gtgaggagga 2641 agagatcaaa ataagacaaa ggattttcag gccaaccagg aaacaacgca gagaggagag 2701 ggccaatctg ggcctggtca cagggagtga aattaggaag aggaaccctg acgacttcaa 2761 gccaagagga aagctgtggg ccgatgatga ccgcagtgtc aactacaatg agaaaataga 2821 ctttgaggcc cctcccagtc tgtggtccag aatagtcaac tttggctcgg ggtggggttt 2881 ctgggtctcg tccaacctgt tcatcacatc aacgcatgtt gtgccaccaa acatcacgga 2941 agcttttggg gtcccaataa gccaaatcca agtccacagg agcggagagt tctgcaaaat 3001 gaggttcccc aaggccatca ggcctgatgt ttctgggatg attcttgaag aaggtgcgcc 3061 agaggggacg gttgtgacca tactgatcaa aaggacaacc ggtgagctca tgccattagc 3121 atcccgcatg ggcacccatg ccaccatgaa aatacaggga agaatgattg gtggccaaat 3181 gggaatgctc ctcacagggt ccaacgccaa aaacatggac cttggcacca ttccagggga 3241 ctgtggctgc ccctatgtct acaagagggg caatgagtgg gttgtgatcg gggtacacac 3301 cgctgcggcc agagggggca acacggtgat atgtgcaaca caagggcccg aaggtgaggc 3361 cacacttgaa ggaggagaca accatggaac ctactgtggt gcaccaatct tgggaccagg 3421 aaatgcacca aaactcagca ccaaaaccaa gttttggaga tcctccaatg ccccacttcc 3481 ccctggcacg tatgagcctg cctacctcgg tgggaaggat cctagagtca agggtggccc 3541 atcactacag caagtcatga gagaacaact caagccattc actgccccgc gcgggaagcc 3601 acctaggccg gcaatcttgg aagctgcaaa ggagaccatc tgcaacgtgc tcgagcaaac 3661 catcgaacca cctcaaaaat ggtcttacgc gcaagcctgc gcctccctgg acaagaccac 3721 gtcaagtggc tacccccatc ataagaaaaa gaatgacaac tggaatggtg aatcttttac 3781 tggtgttttg gccgatcagg catcaaaagc aaacctcatg tttgaacagg gaaaacacat 3841 gcaacccgtg tacacagctg cactcaagga tgagcttgta aagactagta agatatatga 3901 taagatcaag aagaggctct tgtggggctc tgacctgggc acgatgattc gctgcgcaag 3961 gtcgtttggg ggcctgatgg atgagatgaa agctaactgt gtgagattgc ctatcagagt 4021 tgggatgaac atgaatgagg atggacccat aatctttgag aaacattcaa gatacaggta 4081 ccattatgat gctgactact ccaggtggga ctcgacccag caaaggcacg tgttgggtct 4141 tgcacttgaa atcatggtta ggttttcagc cgaacctgaa ttggcacaaa tagtggctga 4201 ggaccttttg tcacccagtg tcgtggacgt tggtgacttc aaaattacaa taaacgaggg 4261 attgccctct ggtgttccat gcacatcaca atggaactca attgcccact ggctgttaac 4321 attgtgtgcc atgtcggagg tctcaggact ctcgccagat gtggtgcagt caaattcgtg 4381 cttctccttc tatggagacg acgagatagt cagcacagac ataaaattgg acccacaaaa 4441 actgacagac aagctgaaag aatatggact gatcccaacc cggcccgaca agacagaggg 4501 gccactcata atcaaagaga gcttagaagg cctgacattt ctaagaagaa acatatgcag 4561 ggacccggtt ggatggtatg gtcaacttga ccagtcatca atcatgaggc agttgtattg 4621 gacaaaagga cccaaccatg aagaccccaa cgaaacaatg atcccacact cccaaagacc 4681 agtgcagtta atgtctctcc ttggtgaagc ttccctacac ggccctgctt tttacaagaa 4741 agttagcaaa ttggtcataa ctgaattgag ggaagggggg atggatttct atgtgcccag 4801 acaagaacca atgttcagat ggatgagatt ctctgacttg agcacgtggg agggcgatcg 4861 caatcttgct cccgaaggtg tgaatgaaga tggcgtcgaa tgacgccgct ccatctaatg 4921 atggtgcagc cggtctcgta ccagagatca acaacgagac aatggctttg gaaccagtag 4981 ctggaggagc aatcgctgcc cctctaactg gacaaacaaa tttcattgat ccctggatta 5041 gaaataatta tgtgcaggca cctaatggtg aatttacagt ttctcccaga aattcccctg 5101 gtgaaatttt gctcaatttg gaattgggtc ccgagctcaa ccctttcttg gcccatttgt 5161 ctaggatgta taatggtttt gctggcggca ttgaggttca ggtcatcatg gcgggcaacg 5221 ccttcaccgc tggtaagatc atctttgcag cagtgcctcc caattttccc acagaaaatc 5281 ttagccctcc acaaatcacc atgtttcccc acgtcataat agatgtgaga accctcgagc 5341 ctgtcaacat tcccttgcct gatgttagaa acaatttctt ccattatagc caaaacaatg 5401 agccccgcat gagattgtta gcaatgttgt ataccccact cagatcaaat ggttctgcag 5461 aagatgtttt cactgtgtcg tgtagggtcc tcaccaaacc ctcaccagat tttgaattca 5521 actacttggt ccccccaact gtcgagtcta ggacaaagcc cttcaccata ccaatactca 5581 caattggaga gatgacaaat tcaagattcc ctgtggccat tgatttcctg cacaccagcc 5641 ccactgagaa catcgttgtt cagccgcaaa acggcaggtg cacgctggat ggtgaactgc 5701 tgggcaccac tcaattggtc acttctaaca tctgtgcctt cagagggtcc atctcaggac 5761 acgagaatac aggagataac caccaatggc attttaatat caccaacccc aatggcactc 5821 cgtttgaccc cacagaggat gtgcctgctc cacttggaac cccagacttc acaggccagc 5881 tctatggagt catttctcaa cggaacaggg aggggactcc tggtgaaaac aaccagaagg 5941 ccaacaggtc ccatgaggga gtgatctcaa cactcgcacc aagatttaca ccaaagctgg 6001 ggtcggtcat gattggcaca tggaccacca atgacattga aaaccaaccc tccagattcg 6061 ctccaattgg cttgaatgat gatgacaatt ataaccagtg gcaattgcca aactactccg 6121 gggcactcac tctcaacatg gggttggcct cgtctgtttt ccctacttac cctggtgaac 6181 agcttctttt cttccgctca tacatcccaa tgaagggggg atatggtagc ccattcatcg 6241 actgtcttat accccaagag tgggtctccc atttctatca agaatcagca ccctcacaga 6301 cagatgtggc tctgatcagg tatgtcaacc ccgacactgg acgcgtcctg ttcgaggcca 6361 aattgcacag acaaggatac atcaccgtcg ccaagaccgg tgacagcccc atcaatgtac 6421 ctgctaatgg ttatttcaga tttgattctt gggttaatca gttctactct ctcgccccca 6481 tgggaactgg gaatgggcgc agaaggattc aataatggca ggagctttta tagcaggatt 6541 ggctggtgac atgttaacaa acactgtagg gtctttagtt aatgcagggg ctaatgctat 6601 taatcagaaa gttgattttg agaataataa atatttgcaa aatgcatcat ttgcccatga 6661 taaggagatg ttacaagcac aagttgaggc cacaaagaaa ctgcaggccg aaatgattgc 6721 catcaaacaa ggggttttaa ccgcaggcgg cttttcccct tctgatgcgg cccgtggggc 6781 aattaacgcc cctatgacaa aagtcttaga ttggaatggg acaagatact gggcccccaa 6841 cgccacctct acaacctcta tgtcaggtgg cttcacgggt caaaccgtgc acaggcccac 6901 accaaatttc aaaacaaacc aggcacccaa atctataccc agtagtggat cctcagtaag 6961 gtcaaacacg acccaacttt ctagtctgag ttcacattcc tctgggtctt cccgatccag 7021 cgggtccaca actgtcagct ccctaccatc atccagtagg actagggact gggttaatca 7081 gcaaaatctc aatttggaac cacatatgcc tggatccctc agaacagctt ttgtcactcc 7141 accatctagc agggcctcca gttcaggcac agtctcaacc gtgcccaaag gtgttttgga 7201 ctcctggaca tctgcgttta acacacgcag acagccgctg tttgcacacc ttcggagaag 7261 gggggagtca aatgtttagt gaaaagatta gtttaaattt gatttaattt ggat //