![]() |
![]() |
![]() |
![]() |
|
Typing tool
|
Complete norovirus genomes
MK733201 | GII.12 | ![]() |
|
---|---|---|---|
GII.P26 |
ORF1: 1..5060 ORF2: 5041..6648 ORF3: 6648..7427LOCUS MK733201 7468 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GII isolate Arg1382 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MK733201 VERSION MK733201.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7468) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Recombinant Nontypeable Genotype II Human Noroviruses in the Americas JOURNAL Emerging Infect. Dis. 26 (1), 157-159 (2020) PUBMED 31855537 REFERENCE 2 (bases 1 to 7468) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7468) AUTHORS Tohma,K., Lepore,C.J., Degiuseppe,J.I., Stupka,J.A., Saito,M., Mayta,H., Zimic,M., Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2.3.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7468 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Arg1382" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="Argentina" /collection_date="03-Apr-1998" /note="genotype: GII.12" gene <1..5060 /gene="ORF1" CDS <1..5060 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QBR98792.1" /translation="TAGTTSTNSEIHNKDENPSSNIFANMTVGIKRALGARPKQSAPG ATSSDKNGKTTIPSIPPPPPNGEDIVIKYTKQGDTISGVPIVSTADISPLHDTAYSVP PLDQREKVDAKEPLTGSIIEMWDGEIYHYGLYVERGLVLGVHKPPAAVSVARIELTPL SLYWRTVYTPPYLVAPDTLKKLHGETFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSR TTGFYRPYQDWNRKPMPTMDEGKLKKVANVFLCGLSGLFTRPIKDLIGKLKPLNILNI VTNCDWTFPGVVESIILLAELFGIFWTPPDISAFVASLLGDYEMQGPEDIATEIVPVI LGGIGMVLGFTKEKIGRLLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKNEVNEME MVRTIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKLSTKSASPDIVG TINSLLARIAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLS GDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVADALRLQELADTCPLTLNCDRI ENKGKVFDSDTLIITTNLANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQP DMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLD EFDLQGPELPVYNFDQNKVAAFRKLAADNKYGFMDTLRAGNKLKEVKTLDQFKEAVKD IRIKPCRIIYNSLAYDLDSNGSGKVNVKKVGDQRVQANNELNSALNRLRGARIRYYVK CFQEMVYSLLQIAGAAFVTSRMAQRMNINKLWAKPGKQLETPAEPPTPPAEEWTITPM DAVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRY YEELAIAKATEENFCEEEEVKIRQRIFRPTKKQRREERATLGLVTGSEIRKRNPDDFK PKGKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLFITSTHVIPQNM SEAFGVPINQIQIHRSGEFCKMRFPKAIRPDVAGMILEEGAPEGTVVTILIKRTTGEL MPLASRMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRGNDWV VIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPILGPGNAPKLSTKTKFW RSSNTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAVLEAAK ETICNVLEQTIEPPQKWSYAQACASLDKTTSSGHPHHKKKNDNWNGESFTGVLADQAS KANLMFEQGKHMQPVYTGALKDELVKTSKIYENIKKRLLWGSDLGTMIRCARSFGGLM DEMKANCVNLPVRVGMNMNEDGPIIFEKHSKYRYHYDADYSRWDSTQQRHVLGAALEI MVRYSAEPELAQIVAEDLLSPSVMDVGDFKIIINEGLPSGVPCTSQWNSIAHWLLTLC AMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYGLIPTRPDKTEG PLIIRESLEGLTFLRRDVCRDPVGWYGKLDQSSIMRQLYWTKGPNHEDPNETMIPHSQ RPVQLMSLLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTW EGDRNLAPESVNEDGVE" mat_peptide <1..965 /gene="ORF1" /product="p48" mat_peptide 966..2063 /gene="ORF1" /product="NTPase" mat_peptide 2064..2585 /gene="ORF1" /product="p22" mat_peptide 2586..2984 /gene="ORF1" /product="VPg" mat_peptide 2985..3527 /gene="ORF1" /product="Pro" mat_peptide 3528..5057 /gene="ORF1" /product="RdRp" gene 5041..6648 /gene="ORF2" CDS 5041..6648 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR98790.1" /translation="MKMASNDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNSFFHYNQQNESRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNENLVVQPQNGRCALDGELHGTT QLLPTAVCSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATDSTKFTPKLGAIQIGTWEVDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQLLFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRNGFITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6648..7427 /gene="ORF3" CDS 6648..7427 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR98791.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQRVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTTFSGGFTSASHTRTVDLTKKTSATPAPMPASRPSSTVSTVSTRSTL VSGSSNPSSLARSSFSVSSQPTSSSSRTSEWVRTQNRTLEPYMRGALQTTYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQA" ORIGIN 1 cgaccgctgg cacaaccagc acaaacagtg aaattcacaa caaagatgag aatccctcat 61 caaacatatt tgccaacatg actgttggca taaaaagggc tctaggggcg agaccaaagc 121 agtccgctcc tggagccaca tcaagcgata agaatgggaa aaccaccatc ccctctatac 181 ctcccccacc cccaaatggt gaggacatag tgatcaaata caccaaacaa ggggacacga 241 tcagtggagt gcccatcgtc tccactgcag acatatctcc tctgcacgac actgcgtaca 301 gtgtccctcc cctggaccaa agggaaaagg tagacgcaaa ggagccccta actggctcaa 361 taattgaaat gtgggacggt gagatttacc attatgggct ctatgtggag agagggttgg 421 tcctcggtgt gcacaaacca ccagctgccg tgagcgttgc acgcatcgag ttgacccccc 481 tttctctgta ctggagaaca gtttacacac ccccttactt ggttgctcct gacactctta 541 agaagctcca tggtgaaacc tttccctaca cagcattcga caacaactgt tactcattct 601 gttgctgggt tttggacctg aacgattctt ggcttaacag aaagttcgtg tcaagaacca 661 caggcttcta cagaccctat caagattgga acagaaaacc aatgccaact atggacgagg 721 ggaaactcaa gaaagtggcc aatgtgttcc tgtgcggtct gtctgggctg ttcactaggc 781 ccattaaaga ccttataggt aagcttaaac cactaaacat cctcaacatt gtcaccaact 841 gcgactggac cttccctggc gttgtggaat caataatcct ccttgcagaa ctctttggca 901 tcttttggac accaccagac atatctgctt tcgttgcatc cttattaggt gactatgaaa 961 tgcaaggtcc tgaagatatc gcaaccgaga ttgttccagt catccttggc ggcattggta 1021 tggtcctcgg tttcaccaaa gagaaaattg gtcggctgct gagctccgcg gcatcatccc 1081 ttagagcatg cagggagatt ggcaactatg gaatagaagt ggtgaaactg gtgatgaaat 1141 ggttcttccc gaccaagaat gaagttaatg aaatggagat ggtcagaaca atagaggatg 1201 cagtgcttga ctttgaagca atagaaaaca accatatgac agctttgctc aaagacaaga 1261 atagtctggc caccttcctc agagcattag acatggaaga ggaaaaggca cgtaaactgt 1321 caaccaagtc cgcctcaccc gacatagtcg gtaccataaa ctcacttttg gcgagaatcg 1381 ccgctgccag atccctagtg cacagggcta aggaagagat gtcatctagg atgcgtcctg 1441 ttgttatcat gatatctgga cgacctggga tagggaagac tcacctggca cgcgatctgg 1501 ccaaaaagat ggcagccact ctatcgggtg accaaagagt gggccttgtc ccaagaaacg 1561 gtgtcgacca ctgggatgca tataagggag agaggatcgt cctctgggac gattatggca 1621 tgagcaaccc cgtggcagat gccctccggc tccaagaact cgccgacact tgccccttaa 1681 cactcaactg tgatagaata gaaaacaaag ggaaggtctt tgacagtgac accctgatca 1741 tcactaccaa tttggccaat ccagctcccc ttgactatgt gaattttgag gcttgctcac 1801 gtcgcataga cttccttgtc tacgcggact ccccctcagt tgacaaggca aagagagact 1861 ttccaggcca gccagacatg tggaaggacg cctttaagcc agacttctca catataaagt 1921 tacagttggc accacaagga ggatttgaca agaatggaaa cactccgcac gggaagggcg 1981 tcatgaagac actgaccaca cattccctca tagcccgtgc cactggccta ctccatgaga 2041 gactggatga atttgaccta caaggcccag agttgccagt gtacaatttt gaccaaaaca 2101 aggtggctgc gttccgaaaa ctcgcggccg acaacaagta tggctttatg gacaccttga 2161 gagcaggtaa caaattgaag gaagtcaaaa ccctagatca attcaaggaa gcagtgaagg 2221 acatacgcat aaaaccctgt aggataattt acaattccct ggcctatgat ttggattcaa 2281 atgggtcagg aaaagtcaat gtcaaaaagg taggggacca aagggtccag gccaacaatg 2341 aactcaactc cgcactcaat agactgcgcg gagccagaat cagatactat gtgaagtgct 2401 ttcaagaaat ggtctactca ctcctccaga ttgctggtgc ggcttttgtc acatcgagga 2461 tggcacagag gatgaatatc aacaagctgt gggcaaaacc aggaaaacaa ttggagaccc 2521 ccgcagaacc acccacccct ccagctgaag aatggactat aacaccaatg gatgcagtcc 2581 aggaaggtaa gaaaggcaaa aacaagagtg gcaggggcaa gaaacacact gctttctcta 2641 gtaaaggtct cagcgatgag gagtatgatg agtacaaaag aattagggag gagcgccaag 2701 ggaagtactc catagaagaa tacctccagg atagggaccg gtactatgaa gaattggcca 2761 tagccaaagc aacagaagaa aacttctgtg aagaggaaga agtcaaaata aggcagagga 2821 ttttccgccc aactaagaaa caacgtaggg aggagagggc caccttgggt cttgttactg 2881 gtagtgagat aagaaagagg aatcctgatg acttcaagcc aaaagggaag ttgtgggctg 2941 atgatgaccg cagtgttaat tataatgaaa gaatagattt cgaagctccc cccagtctct 3001 ggtccagaat agtcaacttt ggatcgggct ggggtttctg ggtttcctcc aatctgttta 3061 tcacttccac acatgtcatc ccacaaaaca tgtccgaagc ctttggtgtg ccaataaacc 3121 aaatacagat acacagaagt ggggagttct gtaagatgag gttcccaaaa gccatcaggc 3181 ccgacgtggc tggcatgatc cttgaggaag gtgcccctga aggaacagtc gtgaccatat 3241 tgatcaaaag aacaactggt gagctcatgc cattagcatc tcgcatgggc acccatgcta 3301 ctatgaaaat acaaggcaga atgattggag gtcagatggg aatgctcctc acaggatcca 3361 atgccaagaa catggatctc ggcaccatcc ctggtgactg tggttgtcct tacgtctaca 3421 agaggggcaa tgactgggtt gtcatcgggg tgcacactgc cgccgctagg ggcggtaaca 3481 cggtgatctg tgctacccag ggaccagatg gtgaggccac cctcgagggg ggtgacaacc 3541 atgggacata ctgtggtgcg cccatactag ggccagggaa tgctccaaaa ctcagcacca 3601 agaccaaatt ttggagatcc tccaacaccc cgcttccccc tggcacatat gaacctgcct 3661 atctcggtgg taaagaccca agggttaagg gcggcccatc actgcagcag gtcatgaggg 3721 aacagctcaa acccttcact gctccacgtg ggaaaccgcc gagaccagcg gttctggagg 3781 ccgcaaagga aaccatctgt aatgtgttag agcaaaccat tgaaccaccc cagaaatggt 3841 cctacgcgca agcctgcgca tccctggaca aaacaacctc aagtggtcat ccccaccaca 3901 agaagaaaaa tgacaactgg aatggtgaat ccttcactgg tgttctggcc gatcaggcat 3961 caaaggccaa cctcatgttc gagcagggga aacacatgca gcctgtgtat acaggagcgc 4021 tcaaagatga acttgtcaaa accagcaaaa tttacgagaa catcaagaag aggcttctgt 4081 ggggctcaga cctgggtacg atgatacgct gtgccagatc atttggtggt ctcatggatg 4141 aaatgaaggc aaactgcgta aacctaccag tcagagttgg catgaacatg aatgaggacg 4201 ggcccataat ctttgagaaa cattcaaaat acagatatca ttatgatgct gactactcta 4261 ggtgggattc aacacaacaa agacatgtct taggtgctgc acttgaaata atggtcaggt 4321 actcagccga gcccgaattg gcacaaattg tggctgagga ccttttgtcg cccagtgtca 4381 tggacgttgg cgacttcaaa atcatcataa acgagggttt gccctctggg gtcccatgca 4441 catcacaatg gaattcaatc gctcattggc tgctaacatt gtgtgccatg tcagaagtct 4501 cagggttgtc accagatgtg gtgcaatcaa actcatgctt ctccttttat ggggacgatg 4561 agatagttag cacagacatc aaactggatc cccaaaaatt aacagacaaa ctgagggaat 4621 acggcttgat cccaaccaga cctgataaga cagaaggccc cctcataatc agggaaagct 4681 tggagggtct aaccttcctg agaagggatg tgtgcagaga cccagttggg tggtatggca 4741 aacttgacca atcttcaatc atgagacaac tgtattggac caaaggaccc aatcatgaag 4801 accccaacga aacgatgatc ccacactccc agagacctgt gcaattgatg tccctacttg 4861 gtgaagcggc cctacacgga ccagctttct acaaaaaggt tagcaaattg gtcataactg 4921 aactcaaaga aggtggaatg gatttttatg tacccaggca agaacctatg tttagatgga 4981 tgagattctc tgatctgagc acgtgggagg gcgatcgcaa tctggctccc gaaagtgtga 5041 atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgcagccgg tctcgtacca 5101 gaggctaaca atgagaccat ggcactcgag ccggtggctg gggcttcaat agctgcccca 5161 ctcaccggtc aaaataatgt tatagacccc tggattagat taaactttgt gcaggctccc 5221 aatggagagt tcacggtttc accccgcaat tctcctgggg aaatcctact aaatttggaa 5281 ttaggtcccg aactaaatcc atacctggca catctttcta gaatgtataa tggttatgca 5341 ggtggagttg aggtgcaagt actattggct gggaacgcgt tcacagctgg aaaattggtg 5401 ttcgctgcag tcccccctca ttttccatta gaaaatataa gccctggcca aataaccatg 5461 ttccctcatg taattattga tgttaggact ttagaaccag ttttgttgcc cctcccagac 5521 gttaggaata gcttctttca ctacaaccag caaaatgaat caaggatgag attagtagca 5581 atgctctata ctccccttag atctaatggc tctggtgatg atgtgttcac tgtctcctgt 5641 agggtgctta ctcgaccttc tcctgatttt gatttcaatt atttggtccc ccctactgtt 5701 gagtctaaaa ctaaaccctt cacactccct atcttgacta taggggagtt aaccaattcc 5761 aggttccctg tacctataga tgagctctac accagtccca atgagaattt ggtggtgcag 5821 ccacagaacg ggagatgcgc gctggatggg gagttgcatg gcacgactca gctccttccc 5881 acggcggttt gctcgttcag gggccggatt aaccaaaagg tgagtggaga aaaccatgtt 5941 tggaatatgc aggttaccaa catcaacggg accccttttg atccaacaga ggatgtcccg 6001 gcccctttag gcactccaga cttttccggc aagctctttg gtgtcttaag ccagagggac 6061 catgacaatg cctgcaggag tcatgatgca gtaattgcaa ctgactctac caaattcacc 6121 ccaaaattgg gcgctataca aattggcaca tgggaagtag atgatgtgca catcaaccaa 6181 cccactaaat tcaccccagt tggtttattt gaaaatgaag gctttaatca atggacgctc 6241 cccaactact ctggagcctt aacacttaat atgggactgg cccctcctgt ggcccctact 6301 ttccctggtg aacaacttct tttctttaga tcccacatcc ctcttaaagg aggtgtggca 6361 gacccagtca ttgactgcct tttgcctcaa gaatggatcc aacatcttta ccaagagtcg 6421 gccccttcac aaacagacgt ggcactaatt aggttcacaa atccagacac agggcgtgtc 6481 ctatttgaag caaaactgca tagaaatggt tttattacag tggccaatac tggtagtaga 6541 ccgattgtgg tgccagctaa tggctacttc aggtttgact cttgggttaa tcagttctac 6601 tctcttgccc ccatgggaac tgggaacggg cgcagaaggg tgcagtaatg gctggagctt 6661 ttatagcagg gcttgccggt gacatagtca ccaatggcat cggttcactc gtgaatgccg 6721 gggccaatgc aataaaccaa agagtagact ttgaaaacaa taagcaacta cagcaggctt 6781 ctttcaacca tgataaagag atgttgcaag ctcaaatcca ggccaccaaa cagctacagg 6841 ctgatatgat tgcaatcaga caaggggtgt tgaccgcagg cggcttctcc cccactgatg 6901 cagcaagagg ggcagttaat gcacccatga ctcaggtttt agactggaac gggaccaggc 6961 attgggcccc aggagccacg aaaaccacca ctttctccgg tgggttcacc agtgcttccc 7021 ataccaggac tgttgacctg accaagaaaa catcagccac accagcccct atgcctgctt 7081 ccagacctag ttctactgtc tctacagtct ctactcgctc aaccttggtt agcgggtctt 7141 ccaacccttc ttctctagct aggagttctt ttagtgtttc ttctcaacct acctcctcct 7201 cctcccggac cagtgagtgg gtacgcactc aaaacaggac actggagcct tacatgagag 7261 gggcgctgca aacaacctat gtaacgcctc cctctagtag agcttctagc aatggcacag 7321 tctcaaccgt gccaaaagag gttttggact cctggacatc tgcgtttaac acccgcagac 7381 aaccgctatt cgctcacctc cgccggaggg gggagtcaca agcttagtga aaagatgatt 7441 tttctttctt ccctttgaaa atttctgt //