Typing tool
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Typing tool
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Complete norovirus genomes
| MK726262 | GIV.1 | |
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| GIV.P1 |
ORF1: 1..1319
ORF2: 1300..2970
ORF3: 2970..3687
LOCUS MK726262 3687 bp RNA linear VRL 01-NOV-2019
DEFINITION Norovirus GIV isolate G19_023 nonstructural polyprotein, RdRp
region, (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds;
and VP2 (ORF3) gene, partial cds.
ACCESSION MK726262
VERSION MK726262.1
KEYWORDS .
SOURCE Norovirus GIV
ORGANISM Norovirus GIV
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3687)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3687)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3687
/organism="Norovirus GIV"
/mol_type="genomic RNA"
/isolate="G19_023"
/isolation_source="sewage"
/db_xref="taxon:262897"
/country="France: Nantes"
/collection_date="05-May-2014"
/note="genotype: GIV.1-GIV.1"
gene <1..1319
/gene="ORF1"
CDS <1..1319
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="QBR53300.1"
/translation="PRGRPVKPHLLQAAVKTIENVLEQTIDPPTPWTYAQACQSLDKT
TSSGWPHHVQKNTHWNGEAFTGPLADQASKANLMYEQGKSMTPQYTAALKDELVKPDK
VYKKVKKRLLWGADLGTMVRCARAFGPFTDALKKCCTQLPVKVGLNINEEGPIIFEKH
AQYELHYDADYSRWDSTQQREVLAAALGIMTKFTAEPQLASVVAEDLISPSMLDVGDY
VVQVNEGLPSGVPCTSQLNSIAHWIITLTSMAEATGLDPDIVQANSYFSFYGDDEIVS
TDIKFNPEVLTLKLKAIGLVPTRPDKTEGPLVVSNKLEGLTFLRRTITRDKVGFFGRL
DKDSILRQMYWTKGPNHQDPSESMLPHQNRATQLMALLGESALHGQNFYKKISGMVIK
EVKNGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAPDFVNEDGVE"
mat_peptide <1..1316
/gene="ORF1"
/product="RdRp"
gene 1300..2970
/gene="ORF2"
CDS 1300..2970
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QBR53301.1"
/translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ
TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG
IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD
VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP
TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT
PVSPNYIASYRGISTGNSRSASPEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG
TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY
WEFKSFGVEGERHTDIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV
WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD
GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ"
gene 2970..>3687
/gene="ORF3"
CDS 2970..>3687
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QBR53302.1"
/translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQALQSN
AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG
TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQTNHVRIDDEVSSVSSLPTAATSVPS
SRTADWVHNQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS
WTPAFNLKHQPFFARFHPRGA"
ORIGIN
1 ctcctcgtgg gagaccagtc aaaccccacc tcttgcaggc cgcagtcaag acaatcgaga
61 acgtgctgga acagaccatt gaccccccaa caccatggac atatgcccag gcttgccagt
121 cgcttgacaa gacaacgtcg agtggctggc cccaccatgt gcagaaaaac acccattgga
181 atggtgaagc atttacagga cccttggccg accaagccag caaggccaat ttgatgtatg
241 aacaagggaa gtccatgacc ccccagtaca ctgctgccct taaggatgaa ctagtgaaac
301 cagacaaggt gtacaaaaag gtcaagaaaa ggctgctgtg gggtgcagat ctcggaacca
361 tggtccggtg cgccagagca ttcggcccat tcactgacgc gcttaagaag tgctgcaccc
421 aacttccagt caaagttgga cttaacatta atgaagaggg acccatcatc tttgagaaac
481 acgcccaata tgagctccac tatgatgcag attattcgcg gtgggattcc acccagcaac
541 gggaggtcct cgccgccgca cttggcatca tgacaaaatt cactgctgag ccacaactgg
601 cctccgttgt ggcagaagac ttgatttccc caagtatgct tgatgttggc gactacgtcg
661 tccaagtcaa tgaagggcta ccctctggtg tcccctgcac ctcacagtta aacagtattg
721 cccattggat catcaccctt acatccatgg ctgaggccac tggcctggat cctgacatcg
781 tccaggctaa cagctacttc tccttctatg gtgatgatga aattgtgtca acagacataa
841 aattcaatcc agaggtcctc accctgaaac ttaaagcaat tggccttgtc ccaacccgcc
901 cagataagac agaaggccca ttggtggtgt caaacaaatt agaaggtctg acttttctga
961 ggcgcaccat aactagagac aaagtgggct tctttggtcg gttggataag gattccatcc
1021 tcaggcaaat gtactggacc aagggcccga accatcagga cccatctgaa agcatgttac
1081 cccaccagaa tcgcgccaca caattgatgg ccctgttggg cgagtcagca ctccatggtc
1141 aaaacttcta taaaaagatt agtggcatgg taatcaaaga agtgaagaat ggtgggcatg
1201 agttctatgt gccaaagttt gagtccatgt acaagtggat gcggttctca gacttgagca
1261 cttgggaggg ggatcgcgat ctcgctcccg attttgtgaa tgaagatggc gtcgagtgac
1321 gctgctccat ctacggatgg tgcgggcaac ctcgttccag agagtcaaca agaggtgttg
1381 cccctcgccc cagtcgcagg cgctgcgtta gcggcacctg tggtggggca aacaaatata
1441 attgacccct ggattaaaga aaattttgtt caagcccccc agggtgagtt tactgtctca
1501 cctaaaaatt ctcctggtga aattttagtt aatttggaat tgggacccaa gctcaacccc
1561 tatctagacc acctttcacg catgtacaat tcatatgctg gtggcataga tgtcatggtg
1621 gtgttggcgg gcaacgcctt cacagccggc aaggttttaa tagcagctat ccccccaaat
1681 ttcccagtgg aaggagtgtc cgcttcacag gccactcaat tcccccatgt gattatagat
1741 gttaggacac ttgaccctgt gcggctcccc ctcccggatg tgcgatccac gttcttccat
1801 tatactaatg atactgaacc aaagatgagg ttagtcattt ggctttacac cccacttaga
1861 actaatggca gtggtgatga ctctttcacc gtctctgggc gcatactcac aaggccctcc
1921 caggactttg agttcgcttt ccttattccc ccaacagtgg aaacaaagac aacccccttt
1981 tcagtgccag gcttctcggt gcaggaaatg tccaactcaa ggtggccagc tgccatctcc
2041 gcaatggtcg tccgtgggaa tgagccccaa gttgttcagt tccagaatgg cagggcccac
2101 ttggatggta tgctgcttgg tacgacacct gtgtcgccca attacatagc atcctaccga
2161 ggcatttcca ctggcaactc tcgttctgct tcccctgagg ccgacgagag ggccgttggt
2221 agctttgatg tgtgggtccg cttacaagaa cccgatggcc aaccctatga catctttggt
2281 aagcagccag ccccaattgg cacccctgat ttcaaggccg tgatagttgg ctttgcagct
2341 aggcccctca catccgggtc ctacgcaaat gaagcgtatg ttaacaccac agccagtgac
2401 tacgccccag ccactggtaa tatgcgcttc acagtcagga acggcgggac cgggcacata
2461 tctgcaaaca aatactggga gtttaaatca tttggtgttg aaggagaaag gcacactgac
2521 atccagtacc aggagtatga gcttcccgat tattctggtc aagttgcttc caaccataat
2581 ctggcccccc ctgtagcccc acgcatgcct ggtgagtcac tattgctttt ccaatcaaat
2641 atgcctgtgt gggacgatgg gcatggagag tccacaccca agaagattca ttgcctattg
2701 ccacaggagt ttattggcca cttctttgat aagcaagccc cctctctagg tgatgctgca
2761 ctacttaggt atgtcaacca ggagacaaat agagtgttgt ttgagtgtaa actttatagg
2821 gatggctaca tcacagttgc tgcatcatca ggattactag atttcccctt ggatggcttc
2881 tttaggtttg attcttgggt tagttctttt tacattttat cccccgtggg aagcggccaa
2941 ggccgcaggg gtagagtgag gtttcaataa tggcttctag cattatggca ggtatagcag
3001 gcgatgtact aggctcagtt gtgggtgggt tagttggagc cggtgctaac gccataaacc
3061 aatctgttga atttgggtac aaccaagcac tgcaatctaa tgctttccaa catgacaaag
3121 acatgcttgc cttacaggtg gccgcgaccc gtcagctaca gtcggatttg atcaacttgc
3181 gcgagcaggt tcttcgcaag ggtggtttct ccgacactga tgcggcgcgt ggagctattg
3241 gtgcccccat gtcacgcctt gtggattgga acggcacaag gttgtccgcc ccgggttcca
3301 tgcacacaac atcatactcg ggccggtttg ttggcacaac cagacagcaa ccccacttca
3361 cccctcctcc acagaccaat catgttagaa ttgatgatga agtttcttct gtctcttcct
3421 tgcccacagc ggcgacctca gttcctagtt ctaggacagc tgattgggtt cataatcaaa
3481 ggcagctatc ctcctggggt tctagtgcat cccaacattc acagctggaa ccctttcacc
3541 caaacgctct gagagtggct tgggggtcta ctccaagttc ctcctccaga gcgtccactg
3601 tggatggttc agtcattgat tcatggaccc ccgcttttaa tttgaagcat cagcctttct
3661 ttgctcgctt tcacccgagg ggtgctt
//