Typing tool
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Typing tool
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Complete norovirus genomes
| MK614130 | GII.2 | |
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| GII.P16 |
ORF1: 1..5100
ORF2: 5081..6709
ORF3: 6709..7488
LOCUS MK614130 7536 bp RNA linear VRL 28-APR-2019
DEFINITION Norovirus GII isolate SZ2018028 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MK614130
VERSION MK614130.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Wang,J., Jin,M., Zhang,H., Zhu,Y., Yang,H., Yao,X., Chen,L.,
Meng,J., Han,M., Guan,X., Hu,G., He,Y. and Duan,Z.
TITLE Norovirus GII.P16/GII.2 Strain in Shenzhen, China:A Retrospective
Study
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Wang,J., Jin,M., Zhang,H., Zhu,Y., Yang,H., Yao,X., Chen,L.,
Meng,J., Han,M., Guan,X., Hu,G., He,Y. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2019) Department of Epidemiology, School of
Public Health, Southern Medical University, 1023 Shatai South
Street, Guangzhou, Guangdong 510515, China
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SZ2018028"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2018"
/note="genotype: GII.P16-GII.2"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCE20821.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAVLEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKPTEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKVKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPMIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6709
/gene="ORF2"
CDS 5081..6709
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCE20822.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6709..7488
/gene="ORF3"
CDS 6709..7488
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCE20823.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIRQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaaa
61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc
121 ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca
181 actcccgagt tagtcaagag gataccccct cctccaccta acggcgaaga agaagaagaa
241 ccagtcatta ggtatgaggt taagagtggg atctctggcc tgcccgagct cacaacagtc
301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt gagagaaaac
361 agggaggcca aggagccgct aacaggggca gtattagaga tgtgggatgg agagatatac
421 cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc acctgcagcc
481 ataagcatgg caagagtgga gctgacgccg ttgtcattgt actggcgtgt ggtgtacact
541 ccccaatacc tcatctcccc tgaaaccctc aggaggctca acggagaggc attcccttac
601 accgcctttg acaacaactg ctatgccttt tgctgctggg tattagacct caatgactca
661 tggcttagca ggaggatggt acaaagaaca acgggcttct tcagacctta ccaagagtgg
721 aacagaaaac ccctgcctac catggatgac tccaaaatta agaaggtagc aaatatattt
781 ctatgttcat tgtccacatt attcaccaga cccataaaag acctcatagg aaaaattaaa
841 ccattgaaca tattaaatat cctggcaacg tgtgactgga cttttgccgg aatagtggag
901 tctctgatat tacttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct
961 atgatcgctc ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa
1021 ctcgtacctg tggtaatggg ggggattggt ttggtgttgg gattcaccaa agagaaaatt
1081 ggcaaaatgt tgtcctcagc agcatcgaca ctcagggctt gcaaagatct tggtgcctat
1141 ggcttagaga tactcaaatt ggtcatgaaa tggttcttcc caaagaaaga ggaggccaat
1201 gagctagcta tggtgagggc catagaggat gctgtactag accttgaggc aatagaaaat
1261 aaccacatga caaccctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg
1321 gacatggagg aggagaaagc caggaggttg tccacaaaat ctgcatcccc tgacatagtt
1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc
1441 aaggaagagc tatctagcag gataaggcca gtagttgtta tgatatctgg caaaccagga
1501 ataggcaaaa ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg
1561 gatcaaagag tcggactcat accacggaac ggtgtggacc attgggatgc atacaaaggt
1621 gagagagtcg tgctgtggga tgactatggc atgagtaacc ctattcatga tgcccttcgc
1681 atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat tgaaaataag
1741 ggaaaagttt ttgacagtga agtcataata attacaacaa acctcgctaa tccagcccca
1801 cttgattatg tcaactttga ggcctgttcc aggagaattg atttcctggt gtacgctgag
1861 gcaccagaag tagaaaaggc aaaacgggac tttcctggtc agccagatat gtggaaggac
1921 gccttcaagc cggacttttc acacatcaag ctacagcttg caccccaggg cggctttgac
1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg
2041 attgcccgtg catcaggcct attgcatgag aggatggatg aatttgaact ccaaggtccc
2101 acaatcacca ccttcaattt cgaccggaac agaatcacgg cattcagaca attggctgca
2161 gaaaacaagt atggattggt ggataccatg aaagttggca atcaattaaa aggagtgaaa
2221 accatggaag aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccagatcatc
2281 tacggtggtt ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag
2341 gtcaagaaca cctctgtaca gaccaataac gagttggctg gggccctgca ccatctcaaa
2401 catgcccgaa tcaggtacta tgtcaaatgt gtgcaagaag cagtctattc catcatacaa
2461 attgccggtg ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc
2521 tggtcgaagc cacaactaga tcaaaatgag tcagagacta aggaagaggc ccccaagtcg
2581 gaagatgacg agttcattat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa
2641 aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag
2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag
2761 tatcttcaag acagagacag gtactatgag gagctcgcca ttgccaagcc cacggaagaa
2821 gacttctgtg aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa
2881 caaagaaagg aagagagggc cacattaggg ctagtaacag gttcagaaat cagaaaaaga
2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac
3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtccaggat tgtgagcttt
3061 ggttctggct ggggcttctg ggtgtcacca agccttttca taacatcaac tcatgtaatc
3121 cccgcaggca taacagaagc atttggagtc cccatcaaac aaattcagat ccacaaatca
3181 ggcgaatttt gccgattcag attcccaaaa ccgattagac cagatgtgac aggaatgatc
3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga
3301 gagctcatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc
3361 atggttggcg gacagatggg tatgttgctc actggatcaa acgctaaagg aatggacttg
3421 ggaacaactc ctggtgactg tggctgtcct tacatctata aaaggggcaa tgactatata
3481 gtcattgggg tgcacactgc agcagcccgt ggtggaaaca ctgtcatctg tgccacacag
3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aagggacata ctgtggggca
3601 cccattctag gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca
3661 tcgaacacgc cccttccacc agggacatat gagcctgcct acctcggtgg ccgtgatccg
3721 cgtgttaagg gtgggccttc cctgcagcag gtaatgagag accagttgaa gcctttcact
3781 gaacccaggg gcaaacctcc aagaccaagt gtattggaag cagccaaaca aaccatcatc
3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcgca ggcgtgtgcc
3901 tcacttgaca aaaccacctc cagcgggtac ccccatcacg tccgaaagaa tgaattctgg
3961 aatggtgaga ccttcactgg taaactggca gaccaagcat caaaagcaaa cctaatgttt
4021 gaggaaggga aacacatgac accagtgtac acagcagcac tcaaggacga actagtcaag
4081 actgagaaaa tctatggaaa ggtcaagaag agactgctct ggggctctga cttgtccacc
4141 atgatccggt gcgctaggtc atttggtggg cttatggacg agatgaaggc acactgcata
4201 tcactcccag tccgagttgg catgaatatg aatgaagatg gcccaatgat atttgagaaa
4261 cattccagat acaaatatca ctatgatgca gactactctc gttgggattc aacacaacag
4321 agggcagtac tagcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg
4381 gcacaaatag tcgctgagga tttgctggcc cctagtgtag tagatgtagg agactttaaa
4441 attacaataa atgaagggct cccttctggt gtgccatgca cttctcaatg gaattccatc
4501 gcacattggc tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt
4561 atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata
4621 aaattggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa accaacccgc
4681 ccagacaaaa ccgagggacc cctgattatc agtgaagatt tgaacggtct cactttcctc
4741 cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt
4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata
4861 ccccattctc aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga
4921 ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg
4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc
5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga
5101 cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat
5161 ggctcttgaa cccgtggctg gtgccgcctt ggcagccccg gtcaccggtc aaacaaatat
5221 tatagaccct tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtctc
5281 tccccgaaat gcccctggtg aagtgctact gaatctagag ttgggtccag aattaaatcc
5341 ttatctggca catttagcaa gaatgtacaa tgggtatgcc ggtgggatgg aggtgcaggt
5401 catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacccca
5461 cttcccggtt gaaaacctta gcccacagca aatcaccatg ttccctcatg tgatcataga
5521 tgtgagaacc ttggaacctg ttttattacc actccctgat gttaggaata acttctttca
5581 ttataaccag aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag
5641 gtctaatggt tcaggtgatg atgtgtttac agtctcctgt agagtgttga ctagaccttc
5701 ccctgacttt gactttacat acctggtgcc accaacagtg gagtctaaaa caaagccatt
5761 caccctccca atcctcacac ttggggaact ttccaattct aggttcccag tgtccataga
5821 ccagatgtac accagcccta atgaaattat atcagtgcag tgtcaaaatg gtaggtgcac
5881 actagacggg gagctccaag ggacaacaca actccaagtc agtggcattt gtgctttcaa
5941 aggtgaagtg accgcccact tgcatgacaa tgaccaccta tataatgtca ccatcacaaa
6001 cttgaatggg tccccttttg atccctccga ggatatccct gcccctctgg gtgtgcctga
6061 cttccaggga agggtttttg gtatcatctc ccaaagagat aaacacaata gtcctgggca
6121 taatgaacca gcaaacaggg gacacgacgc tgtggtccct acttacacag cacagtacac
6181 tccaaaactt ggacaaattc aaattggcac atggcaaact gacgacctta cagtcaacca
6241 accagtcaaa ttcaccccag ttggactcaa tgacactgaa cactttaacc aatgggtggt
6301 ccctaggtat gctggtgccc taaacctcaa tacaaacctt gccccttctg ttgctccagt
6361 atttccagga gagcgcctgc tcttctttag atcatacatt cccctcaagg gcggttatgg
6421 aaacccagcc attgattgcc tactaccaca agagtgggtg caacacttct atcaggaagc
6481 agccccttca atgagtgagg tggccctcgt cagatacatc aacccagaca ctggtcgggc
6541 actgtttgag gccaagctcc acagagctgg tttcatgaca gtctcaagca acaccagtgc
6601 cccggtggtt gtgcctgcca acgggtactt cagatttgat tcttgggtga accaatttta
6661 ttctctcgcc cccatgggaa ctgggaatgg gcgtagaagg gttcaataat ggctggagct
6721 tttgtagctg gtcttgcagg ggatgtgctc agcaatgggc ttagttcact aatcaatgca
6781 ggtgctaatg caataaatca gagggcagaa tttgatttta atcagaaatt gcagcaaaat
6841 tcttttaatc atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag
6901 gcagacatga tggctataag acaaggggtc ttgaccgctg gcggcttttc ccctgctgat
6961 gcagccagag gtgctgtgaa cgcgcccatg acacaggcgc tggattggaa tggcacaagg
7021 tattgggcac caaactccat gaggaccaca tcttattctg gaaagtttac atcaaccgcc
7081 ccagtgaggc aggctgattt ccagcacacc caaagccggc cttcgagtgg ctcctctgtg
7141 tcttcctttg ccactcagtc ttcaaggcca actctgacca caaccactgg ttcctcacat
7201 ggcacagcct catcaaattc aactcgcagc acaagcctct cccaatcaac ggtctccaga
7261 gctacatcta ggactggtga gtgggttaga gatcaaaata gaaatttgga accctacatg
7321 catggtgcct tacagacagc ctttgtcacc ccaccttcca gcagggcatc tgacgggaca
7381 gtctcaaccg tccctaaagg tgttttggac tcctggacac ctgcgtttaa cacccgcagg
7441 cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagcttagtg aaaaggtgaa
7501 aatttgttta ggatgatttg attttacctt ttaaaa
//