Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MK614129 | GII.2 | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..5100
ORF2: 5081..6709
ORF3: 6709..7488
LOCUS MK614129 7536 bp RNA linear VRL 28-APR-2019
DEFINITION Norovirus GII isolate SZ2017278 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MK614129
VERSION MK614129.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Wang,J., Jin,M., Zhang,H., Zhu,Y., Yang,H., Yao,X., Chen,L.,
Meng,J., Han,M., Guan,X., Hu,G., He,Y. and Duan,Z.
TITLE Norovirus GII.P16/GII.2 Strain in Shenzhen, China:A Retrospective
Study
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Wang,J., Jin,M., Zhang,H., Zhu,Y., Yang,H., Yao,X., Chen,L.,
Meng,J., Han,M., Guan,X., Hu,G., He,Y. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2019) Department of Epidemiology, School of
Public Health, Southern Medical University, 1023 Shatai South
Street, Guangzhou, Guangdong 510515, China
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SZ2017278"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2017"
/note="genotype: GII.P16-GII.2"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QCE20818.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTILLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFGGGVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKRARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYRKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6709
/gene="ORF2"
CDS 5081..6709
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCE20819.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IVSQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6709..7488
/gene="ORF3"
CDS 6709..7488
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCE20820.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLIAGGFSPTDAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaaa
61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc
121 ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca
181 actcccgagt tggtcaagag gatacccccc cctccaccta atggcgaaga agaagaagaa
241 ccagtcatta ggtatgaggt taagagtggg atctctggcc tacccgagct cacaacagtc
301 ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagttt gagagaaaac
361 agggaggcca aggagccgct aacaggggca atactagaga tgtgggatgg agagatatac
421 cactatggcc tgtacgtgga gaaaggctta gtgttgggag tgcacaaacc acctgcagcc
481 ataagcatgg caagagtgga gctgacgccg ttgtcattgt actggcgtgt ggtgtacact
541 ccccaatacc tcatctcccc tgaaaccctc aggaggctca acggagaggc attcccttac
601 accgcctttg acaacaactg ctatgccttt tgctgctggg tgttagacct caatgactca
661 tggcttagca ggaggatggt acaaagaaca acgggcttct tcagacccta ccaagagtgg
721 aacagaaaac ccctgcctac catggacgac tccaaaatta agaaggtagc aaatatattc
781 ctatgttcat tgtccacatt gttcaccaga cccataaaag acctcatagg aaaaattaaa
841 ccattgaaca tattgaatat cctggcaacg tgtgactgga cttttgccgg aatagtggag
901 tctctgatat tatttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct
961 atgatcgctc ccttactcgg ggactacgag ttgcaagggc cagaagacct cgccgttgaa
1021 ctcgtacctg tggtaatggg ggggattggt ttggtgttgg gattcaccaa agagaaaatt
1081 ggcaaaatgt tgtcctcagc agcgtcaaca ctcagggctt gcaaagatct tggtgcctat
1141 ggcttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat
1201 gagctagcta tggtgagggc catagaggat gctgtactag accttgaggc aatagaaaat
1261 aaccacatga caatcctgtt gaaagacaaa gacagcttag caacatacat gaaaacactg
1321 gacatggagg aggagaaagc caggaggttg tccacaaaat ctgcatcccc tgacatagtt
1381 gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt ccacagggcc
1441 aaggaagagc tatctagcag gataaggcca gtagttgtta tgatatctgg taaaccagga
1501 ataggcaaaa ctcatctggc cagggaggtg gcaagaaagg tggcatccac tctcacaggg
1561 gatcaaagag tcggactcat accacgaaac ggtgtggacc attgggatgc gtacaaaggt
1621 gagagagtcg tgctgtggga cgactatggc atgagtaacc ctattcatga tgctcttcgc
1681 atacaagaat tggctgatac ttgtcccctt accttaaatt gtgacagaat tgaaaataag
1741 ggaaaagttt ttggcggtgg agtcataata attacaacaa accttgccaa tccagcccca
1801 cttgattatg tcaactttga ggcctgttcc aggagaattg atttcctggt gtatgctgag
1861 gcaccagaag tagaaaaggc aaaacgggac tttcctggtc agccagatat gtggaaggac
1921 gccttcaagc cggacttttc acacatcaag ctacagcttg caccccaggg cggctttgac
1981 aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac cggttctctg
2041 attgcccgtg catcaggcct actgcatgag aggatggatg aatttgagct ccaaggtccc
2101 acaatcacca ccttcaattt cgaccggaac agaatcacgg cattcagaca attggctgca
2161 gaaaacaagt atggactggt ggataccatg aaagttggca atcaattaaa aggagtgaaa
2221 accatggaag aactcaaaca agcaatcagg aatgtgacca tcaagaggtg ccagatcatc
2281 tacggtggtt ccacgtatga ccttgaatct gatggcaagg gcaaagtttt ggtggaaaag
2341 gtcaagaaca cctctgtaca gaccaataac gagttggctg gggccctgca ccatctcaaa
2401 cgtgcccgaa tcaggtacta tgtcaaatgt gtgcaagaag cagtctattc catcatacaa
2461 attgccggcg ctgcgtttgt caccacgcgc attgcgcgcc gcatgaacat acaagaactc
2521 tggtcgaagc cacaactaga tcaaaatgaa tcagagacta aggaagaggc ccccaagtca
2581 gaagatgacg agttcatcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa
2641 aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt gagcgatgag
2701 gagtatgacg agtacaagag gataagagaa gagagaaatg ggaagtactc tatagaggag
2761 tatcttcaag acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa
2821 gacttctgtg aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc caccaggaaa
2881 caaagaaagg aagagagggc cacattaggg ctagtaacag gctcagaaat cagaaaaaga
2941 aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag gagtgttgac
3001 tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat tgtcagcttt
3061 ggttctggct ggggcttctg ggtgtcacca agcctcttca taacatcaac tcatgtaatc
3121 cccgcaggca taacagaagc atttggagtc cccatcaaac aaattcagat ccacaaatca
3181 ggtgaatttt gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatc
3241 ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg ccccaccgga
3301 gagctcatgc ctcttgcagc cagaatggga acacacgcaa ccatgagaat tcaaggccgc
3361 atggttggcg gacagatggg tatgctgctc actggatcaa atgctaaagg aatggacttg
3421 ggaacaactc ctggtgactg tggctgtcct tacatctata aaaggggcaa tgactatata
3481 gtcattgggg tgcacactgc agcagcccgt ggtggaaaca ctgtcatctg tgccacacag
3541 ggaagtgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca
3601 cccattctag gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca
3661 tcgaacacgc cccttccacc agggacatat gagcctgcct acctcggtgg ccgtgatccg
3721 cgtgttaagg gtgggccttc cctgcagcag gtaatgagag accagttgaa gccattcact
3781 gaacccaggg gcaaacctcc aagaccaagt gtattggaag cagccaaaca aaccatcatc
3841 aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcgtgtgcc
3901 tcacttgaca aaaccacctc cagcgggcac ccccatcacg tccgaaagaa tgaattctgg
3961 aatggtgaga ccttcactgg taaactggca gatcaagcgt caaaagcaaa cctaatgttt
4021 gaggaaggga aacacatgac accagtatac acagcagcac tcaaggacga gctagtcaag
4081 actgagaaaa tctatagaaa gatcaagaag agactgctct ggggctctga cttgtccacc
4141 atgatccggt gcgctaggtc atttggtggg cttatggacg agatgaaggc acattgcata
4201 tcactcccag tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa
4261 cattccagat acaaatatca ctatgatgca gactactctc gttgggattc aacacaacag
4321 agggcagtac tagcggcagc cttggaaatc atggtcagat tctctgcaga accacaattg
4381 gcacaaatag tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa
4441 atcacaataa atgaagggct cccttctggt gtgccatgca cttctcaatg gaactccatc
4501 gcacactggc tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt
4561 atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata
4621 aaattggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa accaacccgc
4681 ccagacaaaa ccgagggacc cttgattatc agtgaagatt tgaacggtct cactttcctc
4741 cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt
4801 ttgaggcaga tgtactggac tagaggacca aatcatgaag atcccaatga gactatgata
4861 ccccattctc aaagacccat acagctcatg gcactgcttg gtgaagcttc tcttcacgga
4921 ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg
4981 gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc
5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga
5101 cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca atgaggtcat
5161 ggctcttgaa cctgtggctg gtgccgcctt ggcagccccg gtcaccggtc aaacaaatat
5221 tatagaccct tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtctc
5281 tccccgaaat gcccctggtg aagtgctact gaatctagag ttgggtccag aattaaatcc
5341 ttatctggca catttagcaa gaatgtacaa tgggtatgcc ggtggtatgg aggtgcaggt
5401 catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg tgccacctca
5461 cttcccggtt gaaaacctta gcccacagca aatcaccatg ttccctcatg tgatcataga
5521 tgtgagaacc ttggaacctg ttttattacc actccctgat gttaggaata acttcttcca
5581 ttataatcag aaagatgatc ccaagatgag aattgtggct atgctttata cccccctcag
5641 gtctaatggt tcaggtgatg atgtgtttac agtctcctgt agagtgttga ctagaccttc
5701 ccctgacttt gacttcacat acctggtgcc accaacagtg gagtctaaaa caaagccatt
5761 caccctccca atcctcacac ttggggaact ttccaattct aggttcccag tgtccataga
5821 ccagatgtat accagcccta atgaagttat atcagtgcag tgtcaaaatg gtaggtgcac
5881 actggacggg gagctccaag ggacaacaca actccaagtc agtggcattt gtgctttcaa
5941 aggtgaagtg accgcccact tgcatgacaa tgatcactta tataatgtta ccatcacaaa
6001 cttgaatggg tccccttttg atccctccga ggacatccct gcccctctgg gcgtgcctga
6061 cttccaggga agggtttttg gcatcgtctc ccaaagagac aaacacaata gtcctgggca
6121 taatgaacca gcaaacaggg gacacgacgc tgtggtccct acttacacag cacagtacac
6181 tccaaaactg ggacaaattc aaattggcac atggcagact gacgacctta cagtcaacca
6241 accagtcaaa ttcaccccag ttggactcaa tgacactgaa cattttaacc aatgggtggt
6301 ccctaggtat gctggtgccc taaacctcaa tacaaacctt gccccttctg ttgctccagt
6361 atttccagga gagcgcctgc tcttcttcag atcatacatt cccctcaagg gcggttatgg
6421 aaacccagcc attgactgcc tactaccaca agagtgggtg caacacttct atcaggaagc
6481 agccccttca atgagtgagg tggccctcgt cagatacatc aacccggaca ctggtcgggc
6541 actgtttgag gccaagctcc acagagctgg cttcatgaca gtctcgagca acaccagtgc
6601 cccggtggtt gtgcctgcca acggatactt cagatttgat tcttgggtaa accaatttta
6661 ttctctcgcc cccatgggaa ctggaaatgg gcgtagaagg gttcaataat ggctggagct
6721 tttgtagctg gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt aatcaatgca
6781 ggtgctaatg caataaatca gagggcagaa tttgatttta atcaaaaatt gcagcaaaat
6841 tcttttaatc atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag
6901 gcagacatga tggctataaa acaaggggtc ttgatcgctg gcggcttttc ccctactgat
6961 gcagccagag gtgctgtgaa cgcgcccatg acacaggcgc tggattggaa tggcacaagg
7021 tactgggcac caaactccat gaggactaca tcttattctg ggaaattcac atcaaccgcc
7081 ccagtgaggc aggctgactt ccagcacacc caaagtcggc cttcgagtgg atcctctgtg
7141 tcttcctttg ccactcagtc ttcaaggcca actctgacca caaccactgg ttcctcacat
7201 ggcacagcct catcaaattc aactcgcagc acaagcctct cccaatcaac ggtctccaga
7261 gctacatcta ggactggtga gtgggttaga gaccaaaata gaaatttgga accctacatg
7321 catggtgcct tacagacagc ctttgtcacc ccaccttcca gcagggcatc tgacgggaca
7381 gtctcaaccg tacctaaagg tgttttggac tcctggacac ctgcgtttaa cacccgcagg
7441 cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagcttagtg aaaaggtgaa
7501 aatttattta ggatgaattg attttacctt ttaaaa
//