Typing tool
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Typing tool
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Complete norovirus genomes
| MK483908 | GII.1 | |
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| GII.P16 |
ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS MK483908 7539 bp RNA linear VRL 23-APR-2019
DEFINITION Norovirus GII isolate
Hu/GII.P16-GII.1/RUS/Novosibirsk/NS18-A1400/2018, complete genome.
ACCESSION MK483908
VERSION MK483908.2
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7539)
AUTHORS Zhirakovskaya,E., Tikunov,A., Kravchuk,B. and Tikunova,N.
TITLE Molecular epidemiology of human norovirus associated with sporadic
gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7539)
AUTHORS Zhirakovskaya,E., Tikunov,A., Kravchuk,B. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2019) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT On Apr 23, 2019 this sequence version replaced MK483908.1.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7539
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16-GII.1/RUS/Novosibirsk/NS18-
A1400/2018"
/isolation_source="diarrheal feces"
/host="Homo sapiens; sex: F; age: 21 Y"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="11-Jan-2018"
/note="genotype: GII.P16/GII.1"
5'UTR 1..4
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QBF80272.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESEPKEE
APKSEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTVINVLEQTLDPPQKWTYVQACASLDKTTSSGYPHHIRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 5..1000
/gene="ORF1"
/product="p48"
mat_peptide 1001..2098
/gene="ORF1"
/product="NTPase"
mat_peptide 2099..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 5085..6692
/gene="ORF2"
CDS 5085..6692
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="QBF80273.2"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPAPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICAMRGRINAQVPDDHHQWNLQVTNTNGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEDRDFDLNQPTRFTPVGLYDT
EHFDQWVLPNYSGRLTLNMNLAPSVSPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6692..7471
/gene="ORF3"
CDS 6692..7471
/gene="ORF3"
/codon_start=1
/product="minor capsid proteinVP2"
/protein_id="QCE20583.1"
/translation="MAGAFIAGLAGDIVTNGIGTLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQILATKQLQADMIALRQGVLTAGGFSPTDAARGAVGAPMTQVLDWNG
TRHWAPGAIKTTSFSGGFTSSSHARTLDLPKKTTTAPTPMPVSRPSSSASTVSTRSTV
ISGSSNPPSSIRSSSSVSSQSTPSSSRVSEWVQNQNRALEPYMRGALQTAYVTPPSSR
ASSSGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQA"
3'UTR 7472..7518
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggcc aggcccaaac aacctgcccc gagagacaaa ccacaaaagc ccccaagacc
181 accaaccccc gagttggtca agaggatacc ccctcctcca cctaatggtg aagaagaaga
241 agaaccagtc attaggtatg aggttaagag tgggatctct ggcctgcccg agctcacaac
301 agtcccccag ccggacgtgg ccaatacagc attcagtgtt ccaccactga gcttgagaga
361 aaacagggag gccaaggaac cgctaacagg ggcaatatta gagatgtggg atggagagat
421 ataccactat ggcctgtacg tggagaaagg cttagtgctg ggtgtgcaca aaccacctgc
481 agccataagc atggcaaaag tggagctgac gccgctgtca ttgtactggc gtgtggtgta
541 cactccccaa tacctcatct cccctgaaac tctcaggagg ctcaacggag aggcattccc
601 ttacaccgcc tttgacaaca actgctatgc cttttgctgc tgggtgttag acctcaatga
661 ctcatggctc agcaggagga tggtgcaaag aacaacgggc ttcttcagac cttaccaaga
721 gtggaacaga aaacccctgc ctaccatgga tgactccaaa attaagaagg tagcaaatat
781 attcctatgt tcattgtcca cattattcac cagacccata aaagacctca taggaaaaat
841 taaaccatta aacatattga acatcctggc aacatgtgac tggacgtttg ccggaatagt
901 ggagtctctg atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc
961 tgctatgatc gctcccttac tcggggacta cgagttgcaa gggccagaag acctcgccgt
1021 tgaactcgta cctgtggtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa
1081 aattggcaaa atgttgtcct cagcagcatc aacgctcagg gcttgcaaag atcttggtgc
1141 ctatggctta gagatactca aattagtcat gaagtggttc ttcccaaaga aagaggaggc
1201 caatgagcta gccatggtga gggccataga ggatgctgta ctagatcttg aggcaataga
1261 aaataatcac atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaaaac
1321 attggacatg gaggaggaga aagccagaag gttgtccaca aaatctgcat cccctgacat
1381 agttgggaca atcaacgccc tgttggctcg aatagcagcg gccaggtcat tagtccacag
1441 ggccaaggaa gagctatcta gcaggataag accagtagtt gttatgatat ctggcaaacc
1501 aggaataggc aaaactcatc tggccaggga ggtggcaaga aaggtggcat ccactctcac
1561 aggggatcaa agagtcggac tcataccgag aaacggtgtg gaccattggg acgcatacaa
1621 aggtgagaga gtcgtgctgt gggacgacta tggcatgagc aaccccattc atgatgctct
1681 tcgcatacaa gaattggctg atacgtgtcc ccttacctta aattgtgaca gaattgaaaa
1741 caaaggaaaa gtttttgaca gtgaagtcat aataatcaca acaaatcttg ccaatccagc
1801 cccacttgat tatgtcaact ttgaggcctg ttccaggaga attgatttcc tggtgtacgc
1861 tgaggcacca gaagtagaaa aggcaaaacg ggattttcct ggtcagccag atatgtggaa
1921 ggacgccttc aagccggact tttcacacat caagctacag cttgcacctc agggcggctt
1981 tgacaagaat ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc
2041 tctgattgcc cgtgcatcag gcctactgca tgagaggatg gatgaatttg aacttcaagg
2101 tcctacaatc accaccttca atttcgaccg gaacagaatc acagcattca gacaattggc
2161 tgcagagaac aagtacggac tggtggatac catgaaagtt ggcaatcaat taaaaggagt
2221 gaaaaccatg gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccggat
2281 catctacggt ggctccacat atgaccttga atctgatggt aagggcaaag ttttggtaga
2341 aaaggtcaag aacacctctg tgcagaccaa caacgagttg gccggggccc tgcaccatct
2401 caaacacgcc cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct attctatcat
2461 acaaattgcc ggcgctgcgt ttgtcaccac gcgcattgca cgccgcatga acatacaaga
2521 actctggtcg aagccacaat tagatcaaaa tgaatcagag cctaaggaag aggcccccaa
2581 gtcagaagat gacgagttcg tcatatcttc taaggacatc aaggaggaag gaaagaaggg
2641 caaaaataaa actggccgtg gcaagaaaca cactgcattc tccagcaagg gcttgagcga
2701 tgaggagtat gacgagtaca agaggataag agaagagaga aatgggaagt actctataga
2761 ggagtatctt caagacagag acaggtacta tgaggagctc gccattgcca aggccacgga
2821 agaagacttc tgtgaagagg aggagatcaa aatccgtcag agaattttcc gtcccaccag
2881 gaaacaaaga aaggaagaga gggccacatt agggctagta acaggttcag aaatcagaaa
2941 aagaaaccct gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt
3001 tgactacaat gagaaactgg actttgaggc ccccccaagc atatggtcta ggattgtgag
3061 ctttggttct ggctggggct tctgggtatc accaagcctg ttcataacat caactcatgt
3121 aatccccgca ggcataacag aagcatttgg agtctccatc aaacaaatcc agatccacaa
3181 atcaggtgaa ttttgccgat tcagattccc aaaaccaatt agaccagatg taacaggaat
3241 gatcttggaa gaaggtgcgc ctgagggcac cgtggcaact gtgctcatca aacgccccac
3301 cggagagctc atgcctcttg cagccagaat gggaacacac gcaaccatga aaattcaagg
3361 ccgcatggtt ggcggacaga tgggtatgtt gctcactgga tcaaacgcta aaggaatgga
3421 tttgggaact actcctggtg actgtggttg tccttacatc tataaaaggg gcaatgacta
3481 tatagtcatt ggggtgcaca ctgcagcagc ccgtggtgga aacaccgtca tctgtgccac
3541 acagggaagt gagggtgagg caactcttga gggtggagat gacaaaggaa catactgtgg
3601 ggcacccatt ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag
3661 gtcatcgaat acaccccttc caccagggac atatgagcct gcctacctcg gcggccgtga
3721 tccgcgtgtt aagggtgggc cctccttgca gcaggtaatg agagaccagt tgaagccatt
3781 cactgaaccc aggggcaaac ccccaagacc aagtgtattg gaagcagcca aacaaaccgt
3841 catcaatgtc ctcgaacaaa ctctggaccc tccacaaaaa tggacatacg tacaggcgtg
3901 tgcctcactt gacaaaacca cctccagcgg gtacccccat cacatccgaa agaatgaatt
3961 ctggaatggt gagaccttca ctggtaaatt ggcagaccaa gcatcaaaag caaacctgat
4021 gtttgaggaa gggaaacaca tgacaccagt atatacagca gcactcaagg acgagctagt
4081 caagactgag aaaatctatg gaaagatcaa gaagagactg ctctggggct ctgacttgtc
4141 caccatgatc cggtgcgcta ggtcatttgg tgggctcatg gacgagatga aggcacactg
4201 catatcactc ccagtccgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga
4261 gaaacattcc agatataagt accactatga tgcagactac tctcgttggg attcaacaca
4321 acagagggca gtactggcag cagccttaga aatcatggtc agattctctg cagaaccaca
4381 attggcacaa atagttgctg aggatctgct ggcccctagt gtagtagatg taggagactt
4441 taaaattaca ataaatgaag gactcccctc tggtgtgcca tgcacttctc aatggaactc
4501 catcgcacac tggctgctaa ctctctgcgc cttgtccgaa gtcaccaaac tgtcccctga
4561 cattatacag gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga
4621 cataaaattg gaccctgaac agttaaccgc caaattgaag gagtacggcc tgaaaccaac
4681 ccgcccagac aaaaccgagg ggcccctgat catcagtgaa gatttgaacg gactcacttt
4741 cctccgaagg acggtgactc gtgacccagc tggctggttt ggaaaactgg accaaagctc
4801 aattttgagg cagatgtact ggactagagg accaaaccat gaagacccca atgagacaat
4861 gataccccat tctcaaagac ccatacagct tatggcactg cttggtgaag cctctcttca
4921 cggaccctct ttctacagta aaatcagtaa attggtcata actgaactca aagaaggtgg
4981 gatggacttt tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgcag ccggtctcgt accagaggtc aacaacgaga
5161 cgatggcact tgaaccggtg gctggggctt ccatagctgc ccccctgacc ggtcaaaaca
5221 atgtgataga cccctggatt agaatgaact ttgtccaagc cccaaatggt gaatttacag
5281 tgtccccccg taattcccca ggtgaagtat tgctaaattt ggaattaggt cctgaattga
5341 atccattctt ggcgcacctt tcaagaatgt acaatggtta tgcagggggg gttgaagtgc
5401 aggtgctgct cgctgggaac gcgtttacag cggggaaact ggtatttgca gcaatccctc
5461 cacattttcc ccttgaaaat ttgagccctg gacaaattac tatgtttcct catgtgatta
5521 ttgatgttag gacgttagaa cctgtcctct tacctctccc agatgttaga aataacttct
5581 tccattacaa tcagcaaccc gaaccccgaa tgaggcttgt tgctatgttg tatacccctc
5641 ttagatctaa tggttctggt gatgatgtgt ttacagtttc ttgcagggtt ctcacccgcc
5701 cttctcctga ctttgatttt aactatttgg ttcccccaac agtggagtcc aaaacaaaac
5761 cattcaccct accaattttg actattgggg aattgtcaaa ttctaggttc ccagctccaa
5821 tagatgaact gtataccagc cccaatgaag gagtggtggt gcaaccacaa aatggtagat
5881 caacactcga tggtgaacta ctgggcacca cacaacttgt gccttcaaac atttgtgcga
5941 tgcgaggacg catcaatgcc caagtgccag acgatcacca tcaatggaac ttgcaggtca
6001 caaatacaaa tgggaccccc ttcgacccca ccgaagatgt ccctgcacca ttgggcacgc
6061 cggacttcct ggcaaacatc tatggagtca ccagtcagag aaacccagac aatacttgtc
6121 gtgcccacga cggggttttg gcaacttgga gccctaagtt cacacccaaa ttgggatccg
6181 ttgtcctagg tacctgggaa gatagagact ttgatcttaa ccaacccaca aggttcacac
6241 ctgttggatt gtatgataca gaacattttg accagtgggt cctgcctaat tactctggaa
6301 gattgacctt gaacatgaat ttggcaccct ctgtatctcc cctctttcca ggtgaacaaa
6361 tactcttctt taggtcccat ataccactta agggaggcac ttctaatggt gccattgact
6421 gcctgctacc ccaggaatgg attcagcatt tctaccagga atcagccccg tcacccacgg
6481 atgtggctct aattaggtat accaaccctg acacaggtcg agtcttgttt gaggccaaat
6541 tgcacagaca ggggttcatt acagtggcaa attctggttc taggcctatt gttgttcctc
6601 ctaatggtta ttttagattt gattcttggg ttaatcaatt ttattctctt gcccccatgg
6661 gaactggtaa cgggcgtaga agggtgcagt aatggctgga gcttttatag caggtcttgc
6721 tggtgacata gtcaccaatg gcattgggac actggtaaat gctggggcaa atgcaataaa
6781 tcaaaaggta gattttgaaa ataacaagca attacaacaa gcctctttca atcatgataa
6841 ggaaatgttg caagcccaga ttttggcaac aaaacagtta caggctgata tgattgctct
6901 cagacaaggg gtgttgaccg cgggcggctt ctctcctact gatgcagcaa ggggggcggt
6961 tggtgcacct atgacgcaag tcttggactg gaatgggact aggcattggg cccctggagc
7021 cataaaaaca acatctttct ccggtgggtt cactagctct tcccatgcta gaactcttga
7081 tttgccaaag aaaacaacaa ctgcaccaac cccgatgcct gtatctagac ccagttcttc
7141 tgcttctaca gtttctaccc gctcaacagt cattagtggg tcctctaatc ccccttcctc
7201 gattaggagc tcctctagtg tttcttccca atctactccc tcttcttccc gggttagtga
7261 gtgggtgcaa aatcagaata gggcactgga gccgtatatg aggggggcgc tacaaacagc
7321 ttacgtgacg cccccctcca gtagggcttc cagtagtggc acagtctcaa ccgtgccaaa
7381 agaagttttg gactcctgga catctgtgtt caacacccac agacagccgc tcttcgctca
7441 tctccgtcgg agaggggagt cacaggctta gtgaaaaggt aattttcttc ttttcttcct
7501 tggaaaattt tatcttttaa aaaaaaaaaa aaaaaaaaa
//