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Typing tool
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Complete norovirus genomes
MK355712 | GII.12 | ![]() |
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GII.P16 |
ORF1: 1..5094 ORF2: 5075..6682 ORF3: 6682..7406LOCUS MK355712 7406 bp RNA linear VRL 31-JUL-2019 DEFINITION Norovirus GII isolate HU/GII.P16_GII.12/AlbertaEI464/CA/2018 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION MK355712 VERSION MK355712.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7406) AUTHORS Pabbaraju,K., Wong,A.A., Tipples,G.A. and Pang,X.L. TITLE Emergence of a Novel Recombinant Norovirus GII.P16-GII.12 Strain Causing Gastroenteritis, Alberta, Canada JOURNAL Emerging Infect. Dis. 25 (8), 1556-1559 (2019) PUBMED 31310222 REFERENCE 2 (bases 1 to 7406) AUTHORS Pang,X.L., Pabbaraju,K., Wong,A.A. and Tipples,G.A. TITLE Direct Submission JOURNAL Submitted (02-JAN-2019) Molecular Diagnostics, Provincial Laboratory For Public Health, 3030 Hospital Dr. NW, Calgary, AB T2N 4W4, Canada FEATURES Location/Qualifiers source 1..7406 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="HU/GII.P16_GII.12/AlbertaEI464/CA/2018" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="Canada:Alberta" /collection_date="Oct-2018" /note="genotype: GII.P16_GII.12" gene <1..5094 /gene="ORF1" CDS <1..5094 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QAT98447.1" /translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ PAPRDKPQNPPRPLTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD VANTAFSVPPLSLRESREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS MAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREV ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVEK AKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNASVQTNNELAGALHHLK HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP KPEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL FITSTHVIPTGITEAFGVPIKQVQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFWNG ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGRIKKRLLWGSDLST MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYQYHYDADYSRWDST QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTTKLKEY GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM FRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide <1..990 /gene="ORF1" /product="p48" mat_peptide 991..2088 /gene="ORF1" /product="NTPase" mat_peptide 2089..2619 /gene="ORF1" /product="p22" mat_peptide 2620..3018 /gene="ORF1" /product="VPg" mat_peptide 3019..3561 /gene="ORF1" /product="Pro" mat_peptide 3562..5091 /gene="ORF1" /product="RdRp" gene 5075..6682 /gene="ORF2" CDS 5075..6682 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QAT98448.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNSFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPVLTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATDSTKFTPKLGAVQIGTWEQDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRMQ" gene 6682..>7406 /gene="ORF3" CDS 6682..>7406 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QAT98449.1" /translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMITIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTSASHARTVDLTKKTSATPAPMPVSRPSSIASTVSTRSTL ISGSSNPPSSVRSSSSVSSQPTSSSSRISEWVRSQNRALEPYMNGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWTPAFNT" ORIGIN 1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa 61 tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc cctcggggct 121 aggcccaaac agcctgcccc gagagacaaa ccacaaaatc ccccaagacc actaactccc 181 gagttggtca agaggatacc ccctcctcca cctaatggcg aagaagaaga agaaccagtc 241 attaggtatg aggttaagag tgggatctct ggcctgcccg agctcacaac agtccctcaa 301 ccggacgtgg ccaacacagc attcagtgtt ccaccactga gcttgagaga aagcagggaa 361 gccaaggaac cgctgacagg ggcaatatta gagatgtggg atggagagat ataccactac 421 ggcctgtacg tggagaaagg cttagtgttg ggtgtacaca aaccacctgc agccataagc 481 atggcaaaag tggagctgac gccgctgtca ttgtattggc gtgtggtgta cactccccaa 541 tacctcatct ctcctgaaac tctcaggagg ctcaacggag aggcattccc ttacaccgcc 601 tttgacaaca actgctatgc cttttgctgc tgggtattag acctcaatga ctcatggctt 661 agcaggagaa tggtgcaaag aacaacgggc ttcttcagac cttaccaaga gtggaacaga 721 aaacccctgc ctaccatgga cgactccaaa attaagaagg tagcaaatat attcctatgt 781 tcattgtcca cattgttcac tagacccata aaagacctca taggaaaaat taaaccatta 841 aacatattga atatcctggc aacgtgtgac tggacgtttg ccggaatagt ggagtctcta 901 atactacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc tgctatgatc 961 gctcccttac ttggggatta cgagttgcaa gggccagaag acctcgccgt tgaactcgta 1021 cctgtggtga tgggtgggat tggtttggtg ttgggattca ccaaagagaa aattggcaaa 1081 atgttgtcct cggcagcatc aacactcagg gcttgcaaag accttggtgc ctatggctta 1141 gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc caatgagcta 1201 gccatggtga gggccataga ggacgctgta ctagatcttg aggcgataga aaataaccac 1261 atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaaaac actggacatg 1321 gaggaggaga aagccagaag gttgtccaca aaatctgcat cccctgacat agttgggaca 1381 atcaacgccc tgctggctcg aatagcagcg gccaggtcat tggtccacag ggccaaggaa 1441 gagctatcta gcaggatgag accagtagtt gttatgatat ctggcaaacc aggaataggc 1501 aaaactcatc tggccagaga agtggcaaga aaggtggcat ccactctcac aggggatcaa 1561 agagtcgggc tcataccaag aaacggtgtg gaccattggg atgcatacaa aggtgagaga 1621 gtcgtgctgt gggacgacta tggcatgagt aaccccattc atgatgctct tcgcatacaa 1681 gaattggctg atacgtgtcc cctcacctta aattgtgaca gaattgaaaa taaaggaaaa 1741 gtttttgaca gtgaagtcat aataatcaca acaaaccttg ccaatccagc cccgcttgat 1801 tatgtcaact ttgaggcctg ttccaggaga attgatttcc tggtgtacgc tgaggcacca 1861 gatgtggaaa aggcaaaacg ggactttcct ggtcagccag atatgtggaa ggacgccttc 1921 aaatcggact tttcacacat caagctacag cttgcacctc agggcggctt tgacaaaaac 1981 ggcaacaccc cacatgggaa aggggtgatg aagaccctca ctaccggttc cctgattgcc 2041 cgtgcatcag gcctactgca tgagaggatg gatgaatttg aactccaagg tcctacaatc 2101 accaccttca atttcgaccg gaacagaatc acagcattca gacaattggc tgcagaaaac 2161 aagtatggac tggtggacac catgaaagtc ggcaatcaat taaaaggagt gaaaaccatg 2221 gaagagctca aacaagcaat caggaatgtg accatcaaga ggtgccggat catctacggt 2281 ggctccacat atgaccttga atctgatggt aagggcaaag ttttggtgga aaaggtcaag 2341 aacgcctctg tacagaccaa caacgagttg gccggggccc tgcaccatct caaacacgcc 2401 cgaatcaggt actatgtcaa gtgtgtgcaa gaagcagtct attctatcat acaaattgcc 2461 ggcgctgcgt ttgtcaccac gcgcattgca cgccgcatga acatacaaga actctggtcg 2521 aagccacaat tggatcaaaa tgaatcagag actaaggaag aggcccccaa gccagaagat 2581 gacgagttcg tcatatcttc taaggacatc aaggaggaag gaaagaaggg caagaataaa 2641 actggccgtg gcaagaaaca cactgcattc tccagcaagg gcttgagcga tgaggagtat 2701 gacgagtaca agaggataag agaagagaga aatgggaagt actctataga ggaatatctt 2761 caagacagag acaggtacta tgaagaactc gccattgcca aggccacgga agaagacttc 2821 tgtgaagagg aggagataaa aatccgtcag agaattttcc gtcctaccag gaaacaaagg 2881 aaggaagaga gggccacatt agggctagta acaggttcag aaatcagaaa aaggaatcct 2941 gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt tgactacaat 3001 gagaaactgg attttgaggc ccccccaagc atatggtcta ggattgtgag ctttggttct 3061 ggctggggct tctgggtatc accaagcctg ttcataacat caactcatgt aatccccaca 3121 ggcataacag aagcatttgg agtccccatc aaacaagttc aaatccacaa atcaggtgaa 3181 ttttgccgat tcagattccc aaagccaatt agaccagatg tgacaggaat gatcttggaa 3241 gaaggtgcgc ctgagggcac cgtggcaact gtgctcatca aacgccccac cggagagctc 3301 atgcctcttg cagccagaat gggaacacac gcaaccatga aaattcaagg ccgcatggtt 3361 ggcggacaga tgggcatgtt gctcactggg tcaaatgcta aaggaatgga tttgggaaca 3421 actcctggag actgtggctg tccttacatc tataaaaggg gcaatgacta catagtcatt 3481 ggggtgcaca ctgcagcagc ccgtggtgga aacaccgtca tctgtgccac acagggaagt 3541 gagggtgagg caactcttga gggtggagat gacaagggaa catattgtgg ggcacccatc 3601 ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag gtcatcgaac 3661 acgccccttc caccagggac atatgagcct gcctacctcg gcggccgtga cccgcgtgtt 3721 aagggtgggc cctccttgca gcaggtaatg agagaccagt tgaagccatt cactgaaccc 3781 aggggcaaac ctccaagacc aagtgtattg gaagcagcca aacaaaccat catcaatgtc 3841 ctcgagcaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcctcgctt 3901 gacaaaacaa cctctagcgg tcacccctat cacgttcgaa agaatgaatt ctggaatggt 3961 gagaccttca ctggtaaatt ggcagaccaa gcatcaaaag caaacctaat gtttgaggaa 4021 gggaaacaca tgacaccagt gtatacagca gcactcaagg acgagctagt caagactgag 4081 aaaatctatg gaaggatcaa gaagagactg ctctggggct ctgatttgtc caccatgatc 4141 cggtgcgcta ggtcgtttgg tgggctcatg gacgagatga aggcacactg catatcactc 4201 ccagtccgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga gaaacattct 4261 agataccaat atcactatga tgcagactac tctcgttggg attcaacaca acagagggca 4321 gtactggcag cagccttgga aatcatggtc agattctctg cagaaccaca attggcacaa 4381 atagtcgctg aggacctact ggcccctagt gtagtagatg taggagactt taaaatcaca 4441 ataaatgagg ggctcccctc tggtgtgcca tgcacttctc aatggaactc catcgcacac 4501 tggttgctaa ctctctgtgc cttgtctgaa gtcactaagc tgtcacctga cattatacag 4561 gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga cataaagttg 4621 gaccccgaac agttaaccac caaattgaag gagtacggcc taaaaccaac ccgcccagat 4681 aaaaccgagg gacccctgat catcagtgaa gatttgaacg gactcacttt cctccgaagg 4741 acggtgactc gtgacccagc tggctggttt ggaaaactgg accaaagctc aattttgagg 4801 cagatgtact ggactagagg accaaatcat gaagacccca atgagacaat gataccccat 4861 tctcaaaggc ccatacagct catggcactg cttggtgaag cctctcttca cggaccctct 4921 ttctacagta aaatcagcaa attggtcata actgaactca aagaaggtgg gatggacttt 4981 tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg 5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc 5101 tccatctaat gatggtgcag ccggtctcgt accagaggtc aacaatgaga ccatggcact 5161 tgaaccggtg gctggggctt cgatagccgc cccactcacc ggccaaaata atgttataga 5221 cccctggatt agattaaatt ttgtgcaggc ccctaatgga gagtttacag tctcaccccg 5281 caactcgcct ggggaagtcc tactcaattt ggaattaggc cccgaattga atccatattt 5341 ggcacacctt tctagaatgt ataatggtta tgcaggtgga gttgaggtgc aagtgctact 5401 ggctgggaac gcgttcacgg ctggaaaatt ggtatttgct gcagttcccc ctcattttcc 5461 attagagaat ataagccctg gccaaataac catgttccct catgtaatta ttgatgttag 5521 gactttggaa ccagtcttat tgcctctacc agatgtcaga aatagcttct tccattacaa 5581 tcagcaaaat gagccgagga tgaggcttgt tgcaatgctt tatacccctc ttagatctaa 5641 tggttctggt gatgatgtgt tcaccgtctc ctgtagggtg ctcactcgac cctctcctga 5701 ttttgatttt aattatttgg tgcccccaac agttgaatct aaaacaaaac cattcacact 5761 ccctgtcttg accattgggg agttaaccaa ttccaggttc cctgtgccta tagatgaact 5821 ctacactagc cccaatgaga gtttggtggt tcaaccccag aatgggaggt gcgcgctgga 5881 tggggagttg cagggcacca cccagctcct tcccacggcg atttgctcgt tcaggggtcg 5941 gatcaatcag aaagtgagtg gagagaatca tgtttggaac atgcaagtca ccaacattaa 6001 cggaacccct tttgacccaa cagaggatgt tccagcccct ctgggcacgc cagacttttc 6061 tggcaagctc tttggtgtcc taagccagag ggaccatgat aatgcctgca ggagtcatga 6121 tgcagtgatt gcaactgatt ctaccaaatt taccccaaaa ttgggtgctg tacaaattgg 6181 cacatgggaa caagatgatg tacacatcaa ccaacccacc aagtttactc cagttggatt 6241 gtttgagaat gaaggtttta atcaatggac acttcctaat tattctggag ctttaacact 6301 caatatgggg ttggcccccc ctgtggcccc cacattccct ggtgagcaaa ttctcttctt 6361 caggtcccac attcccctta aaggaggtgt tgcagaccca gttattgatt gtcttctacc 6421 ccaagagtgg atccaacacc tttatcagga gtcagcccct tcacaaacag atgtggcact 6481 gattagattc acaaatccag acacagggcg tgtcctattt gaagcaaaat tacacaggag 6541 tggttacatc acagtggcca acactggtag cagaccaatt gtggtgccag ctaatggtta 6601 tttcaggttt gactcttggg ttaatcagtt ttactctctt gcccccatgg gaactgggaa 6661 tgggcgcaga aggatgcagt aatggctgga gctttcatag cagggcttgc cggtgacata 6721 gtcaccaaca gcattggctc actcgtgaac gctggggcca atgcaataaa ccagaaagta 6781 gactttgaaa acaacaagca actacaacag gcatctttca accatgacaa agagatgttg 6841 caagctcaaa ttcaggccac caaacagcta caggctgata tgattacaat cagacaaggg 6901 gtgttgaccg caggcggctt ctcccctact gatgcagcaa gaggtgcagt caacgcgccc 6961 atgactcaag tcttggattg gaatgggacc agacattggg cccccggagc cacgaaaaca 7021 actgctttct ccggtgggtt taccagtgcc tctcatgcca ggaccgttga cctgaccaag 7081 aagacatcag ccacaccagc ccctatgcct gtttctaggc ccagttctat tgcttccact 7141 gtttctactc gctctacttt gattagtggg tcctctaatc ctccttcttc agttaggagc 7201 tcttctagtg tttcttccca acccacttcc tcgtcctccc gaattagtga gtgggtacgt 7261 agtcaaaata gggcgctgga gccttatatg aatggggcgc tgcgtacagc ctacgtgacg 7321 cctccatcca gtagggcttc tagcaatggc acagtctcaa ccgtgccaaa agaggttttg 7381 gactcctgga cacctgcgtt taacac //