Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MK282256 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 5..5113
ORF2: 5094..6710
ORF3: 6710..7489
LOCUS MK282256 7601 bp RNA linear VRL 30-JAN-2019
DEFINITION Norovirus GII isolate CMC-01, complete genome.
ACCESSION MK282256
VERSION MK282256.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7601)
AUTHORS Kim,H. and Paik,S.-Y.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2018) Department of Biomedical Sciences, College
of Medicine, The Catholic University of Korea, 222 Banpo-daero
Seocho-gu, Seoul, Seoul 137-701, Korea
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7601
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="CMC-01"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="South Korea"
/collection_date="2013"
/note="genotype: GIIP.17_GII.17"
gene 5..5113
/gene="ORF1"
CDS 5..5113
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QAT98494.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRLIQRPSGFFRLYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISFKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDK
GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNRGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKADKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..1003
/gene="ORF1"
/product="p48"
mat_peptide 1004..2101
/gene="ORF1"
/product="NTPase"
mat_peptide 2102..2638
/gene="ORF1"
/product="p22"
mat_peptide 2639..3037
/gene="ORF1"
/product="VPg"
mat_peptide 3038..3580
/gene="ORF1"
/product="Pro"
mat_peptide 3581..5110
/gene="ORF1"
/product="RdRp"
gene 5094..6710
/gene="ORF2"
CDS 5094..6710
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QAT98495.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6710..7489
/gene="ORF3"
CDS 6710..7489
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QAT98496.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDEEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVRMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVDQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa
61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtta cttttaagaa
121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc
181 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga
241 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
301 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag
361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc
481 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt
541 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt
601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa
661 cgactcctgg cttagcagga gattgatcca aagaccatct ggattcttca gactgtatca
721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa
781 tgctgttctg tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa
841 gcttagacca ctgaacattc ttaatgtact ggcaacttgt gactggactt ttgcaggcat
901 agtggaatcc atgatccttc ttgctgaact ctttggggtg ttctggaccc ccccagatgt
961 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
1021 cgtggaactt gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaagga
1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg
1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga
1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag
1321 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga
1381 catcgtgggt acaataaact cattattggc aaggatagca gccgccaggt cactggtcca
1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact
1561 gtcaggcgac caaaggattg gactgatacc tagaaatggc gtcgaccatt gggacgccta
1621 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg acaggattga
1741 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc
1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1861 tgcagacgca cctgacatcg agaaggctaa gcgtgatttc cctggccaac cagatatgtg
1921 gaaagaccat tacagaccag acttcacaca cattaaactt cagctggcac cacagggagg
1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtctc tgacgattgg
2041 ttctctgatc gccagggctt ctggcttgct ccacgagaga atggatgaat tcgagctcca
2101 gggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt
2161 agcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag
2221 tgtcaagacc ctggatgagc tgaagcaggc cataaagaac atcagtttca agaagtgcca
2281 gatagtgtat aacggatgca cctataccat ggaatctgat gggaggagca aggttgtggt
2341 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cactccacca
2401 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct
2461 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatctc
2521 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca aaggaggatg
2581 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg
2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct catccaaggg
2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata
2761 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa
2821 ggccactgag gaggacttct gtgaagagga ggagatcaaa atccgccaga gaatcttccg
2881 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca ccggatcgga
2941 gatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa
3001 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc
3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca
3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatca gaccagacgt
3241 gagtgggatg atcttggaag agggtgcccc tgaaggcact gttgtgtcta ttctcatcaa
3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3421 aagcatggat ctaggcacaa cgccaggtga ctgcgggtgt ccatacatat acaagagggg
3481 caatgacttc gtggccattg gggtgcacac tgcagcagca cgtggaggca acacggtcat
3541 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaggggtac
3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaaaactaa
3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag catacctcgg
3721 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact
3781 taaacctttt acagagccca gagggaagcc accaaatcca aatgtcctag agtcagcaaa
3841 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc
3901 ccaagcttgt gcatccctcg acaagacgac ctccagtgga tacccgcacc acgtccggaa
3961 gaatgactat tggagtggtg aatccttcac agggaaactt gcagaccagg cttcaaaagc
4021 aaatctcatg tatgaggaag gcaagcacat gcaaccggtt tacaccgcag cactcaaaga
4081 cgagctcgtg aaagctgaca aaatttatgg caagatcaag aaaagactcc tgtggggttc
4141 tgacctctcc accatgattc gatgtgccag agcatttggt ggtctcatgg atgagctcaa
4201 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag acggtcccat
4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4441 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4501 atggaattct attgcccact ggttactcac cctgtgtgct ctttctgaag tgacaggact
4561 aggtcctgac atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt
4621 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct
4681 taaacccact cggcccgaca aaactgaggg gccgctggtg attagtgaag acctgaatgg
4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga
4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4861 tgagaccatg ataccacacg cacagagacc tgtgcagctc atggcactac taggagaatc
4921 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ctggtcatat ctgaacttaa
4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5221 gccaaaacaa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5281 agttcacagt gtcacccaga aactcccctg gagaaatttt actaaaccta gagttgggcc
5341 ctgatttgaa cccttatttg gctcatttat caaggatgta caatgggtat gctggtggag
5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagattaca atgctcccac
5521 atttaatagt agatgtaagg actcttgaac caattatgat cccactccct gatgttagga
5581 atacattctt ccattataac aaccagccta acagccgcat gagattagtg gctatgctct
5641 acacccccct tagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt
5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5761 agactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc
5821 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa
5881 atggcaggtg cacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggta
5941 tctgtgcatt cagaggacgg gtgacagcag aaactgacca tcgtgacaag tggcacatgc
6001 aactgcaaaa cctcaatggc acaacatatg acccaactga tgatgtgcca gccccgctgg
6061 gtacacctga cttcaagggc gtcgtgtttg gggtagcaag ccaaagaaat gtgggtaatg
6121 atgcgcctgg ctcaaccagg gcccatgagg cggtgatttc aacctatagc ccccaatttg
6181 tccccaaatt aggttctgtc aattttagaa gtaatgataa tgatttccaa ttgcagccga
6241 caaaattcac accagtgggc atcaatgacg atggtgacca cccgttcaga caatgggaac
6301 taccagacta ttcagggctg cttaccttga atatgaacct tgcccccccg gttgctccaa
6361 atttccctgg tgaacaatta ttattcttca gatcttttgt gccatgctca ggaggttata
6421 accaaggcat tgtagattgt cttatacccc aagaatggat ccaacacttc tatcaggaat
6481 cagcgccctc ccagtcagac gtggccctaa tcaggtatgt taaccccgac acgggacgta
6541 cactgtttga agcaaaattg cacagatctg gttacattac tgtggctcac tctggagact
6601 atcctcttgt tgttccggct aatggatact ttagatttga ttcttgggta aatcagtttt
6661 actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggagc
6721 tttcattgca ggattggcag gcgacatgct cacgtcatct gtgggctccc tggtgaacgc
6781 aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc
6841 ttcctttcag catgatgaag agatgctcca agcgcaggtg aaggcaacca agcagctgca
6901 atctgaaatg atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga
6961 tgcagcaagg ggggccattg gtgcacccat gacaaaggtg cttgactggt ctggcactcg
7021 atactgggca cccaattcca caaagacaac tggttattcg ggacaattca cctcttcacc
7081 tgtgcgcatg cctagcccaa atgctccaca atcaaaacct gcaaagccta ggtctctagc
7141 tccttcttct tcttctagta gtgtctatag tatgtctact caatcaactc atttaacatc
7201 tggctcttct agtaatgctt cttctgcctc tacaaaattg acaaacttaa gctctggctc
7261 ctctcaaaac agaacagcag agtgggtgga ccaacagaga agtcttagcc ctttcatgag
7321 tggcgcactc aatatctcac atgtcacgcc accctcaagt agggcttcca gttccgggac
7381 ggtctcgacc gtgcccaagg aagttttgga ctcctggacg tctgcgttta acacacacag
7441 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat
7501 aattggctat aatgtgattt ctttttaaaa tttggctaat ttgtatcttt taaaaaaaaa
7561 taaaaaaaaa aaaaaaaagt tccaaagcca taacctcatt g
//