Typing tool
|
Complete norovirus genomes
MK236611 | GI.6 | ||
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GI.P11 |
ORF1: 1..5359 ORF2: 5343..6965 ORF3: 6965..7594LOCUS MK236611 7684 bp RNA linear VRL 30-JAN-2019 DEFINITION Norovirus GI isolate NVRL17W01258 nonstructrual polyprotein (ORF1) gene, partial cds; and VP2 (ORF2) and VP3 (ORF3) genes, complete cds. ACCESSION MK236611 VERSION MK236611.1 DBLINK BioProject: PRJNA490520 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7684) AUTHORS Yang,Z. and Coughlan,S. CONSRTM Oarsa, Cfsan, Fda TITLE Direct Submission JOURNAL Submitted (21-NOV-2018) OARSA, FDA, CFSAN, 8301 Muirkirk Rd., Laurel, MD 20708, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. v. 11.0.1 Coverage :: 187 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7684 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="NVRL17W01258" /isolation_source="feces" /host="Homo sapiens; female" /db_xref="taxon:122928" /country="Ireland" /collection_date="14-Dec-2016" /note="genotype: GI.Pb-PI.6" gene <1..5359 /gene="ORF1" CDS <1..5359 /gene="ORF1" /codon_start=2 /product="nonstructrual polyprotein" /protein_id="QAT98930.1" /translation="ASKDVVATNVASNNNANNTSVTSRFLSRFKGLGGGASPPNPIKI KSTEMALGLIGKTAQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWE ELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSVRDGVNLGVN RLTTVNGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVH SPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFC CQVMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQ PFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPD FHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFS LLKKYFFGGDQTERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKA RKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTK AAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQA IADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSA PEVEQIRRVSPGDTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINR LLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVT SMDGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIAL TRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKC RVHQAKAAGKGPIGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRK NNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIG ETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVD YNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIH RAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMR IQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNT VVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPA YLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPV PWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPM YTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVG MNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVA QDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQS MSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLR RTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLH GEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG V" gene 5343..6965 /gene="ORF2" CDS 5343..6965 /gene="ORF2" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QAT98931.1" /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI" gene 6965..7594 /gene="ORF3" CDS 6965..7594 /gene="ORF3" /codon_start=1 /product="VP3" /protein_id="QAT98932.1" /translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR" ORIGIN 1 ggcgtcgaaa gacgtcgttg cgactaatgt tgcaagcaat aacaacgcta acaacactag 61 tgttacatct cgatttctgt cgagatttaa gggtttaggt ggtggcgcga gcccccctaa 121 ccccataaag atcaaaagca cagaaatggc cttgggtttg attggcaaga cagcccaaga 181 ggcagtaggt gccagtgacc taccgcccaa acagcaaaga gatcggcccc ccagaaccca 241 ggaggaagtt cagtacggca tggggtggac tgaaaggccc gtggaccaga atgttaagtc 301 atgggaggaa cttgacacct ccaccaagga agaaattttg gacagccaca aagaatggtt 361 cgacgccggc ggtttgggcc cgtgcaccat gccctcaact tgtgaacagg ctaaagatga 421 cagcccacct ggtgagcaag tcagatggtc agtgcgtgat ggagtcaacc ttggagtgaa 481 ccgtctcacg acagtgaatg gccccgagtg gaacctctgc cctttacccc ccattgacct 541 aaggaatatg gaaccagcca gtgaacccac cattggagac atgatagagt tttatgaagg 601 ccacatctac cactactcca tatacattgg gcaagggaag acagttggtg ttcattcccc 661 acaggcagca ttctcagtgg ctagagtaac catccaacct atagctgctt ggtggagggt 721 ttgttatata ccccagccca aacatagact gagttatgac caacttaggg aattggaaaa 781 tgaaccctgg ccatatgcag ctatcaccaa caattgtttt gagttttgtt gtcaagtcat 841 gaatcttgag gacacatggt tgcagaggcg gctaataaca tcaggtagat tccaccatcc 901 ttcccagtct tggtcacaac agacccctga atttcagcag gacagtaaac tggagctggt 961 tagggatgcc atactggccg cagtgaatgg ccttgtctca caacccttca agaatttctt 1021 gggcaagctc aagcctctta atgtattaaa catcctatct aactgtgact ggacttttat 1081 gggggtggta gagatggtta tactacttct tgagctcttt ggcgtgttct ggaacccgcc 1141 cgatgtgtct aattttatag catctctcct ccctgacttc cacctccagg gaccagaaga 1201 cctggcccgg gatttggtgc cagtcattct tggtggcata ggactagcca ttggatttac 1261 cagagataaa gtcaccaagg tcatgaagag tgctgtggat ggactccggg ccgctacaca 1321 gctggggcaa tacgggttgg aaatattctc actcctcaaa aagtatttct ttggtgggga 1381 tcagaccgaa cggaccctca aaggcattga aacagcagtc atagacatgg aggttttgtc 1441 ctccacatca gtgacacaac tggtgagaga caagcaggca gctaaagctt acatgaacat 1501 cctggataat gaagaggaaa aggctagaaa actctctgct aagaatgctg acccccatgt 1561 aatatcctca acaaatgccc taatatcacg tatagccatg gcgcgatccg ctctggctaa 1621 ggctcaggct gagatgacca gccgaatgag gccagttgtc atcatgatgt gtggaccccc 1681 tggaattggt aaaactaaag cagcggagca cttggcaaaa cgcctagcta atgagatcag 1741 gcctggtggc aaagtgggac tggtaccacg tgaggctgtt gaccactggg atggctacca 1801 tggtgaggaa gtgatgctat gggatgacta tggtatgaca aagatacaag atgactgcaa 1861 caagctccag gctattgctg actctgcccc actcactctc aattgtgata ggattgaaaa 1921 taaagggatg cagtttgtgt cagatgcaat agtcatcacc accaacgctc cagggcctgc 1981 ccctgtggac tttgtcaacc ttggccctgt gtgtagacgg gttgacttcc tggtctactg 2041 ttccgcccca gaggtagagc agataaggag agtcagccct ggagacacgt cggcacttaa 2101 agactgcttc aagtcagatt tctcccacct gaagatggag ttagctcctc aaggggggtt 2161 tgacaaccag gggaacacac cattcggcaa gggtgtcatg aaaccaacaa ccatcaacag 2221 gctcctcata caagctgtgg ctctcaccat ggagagacag gatgagttcc gtctccaagg 2281 gaagatgtat gattttgatg atgatagggt gtcagccttt accaccatgg cacgcgataa 2341 cggattgggc atcctgagta tggcgagcct aggtaagaag ctgcgcggtg tcacatcgat 2401 ggatggcctg aagaatgctt tgaaagggta taaaattggt gcgtgcacaa tcaagtggca 2461 ggccaaggtg tattcactag agtcagatgg caacagcgtt aacatcaggg aggagaagaa 2521 tgtcttgact caacaacagc agtcggtgtg cgctgcctct attgcactca cccgtctgcg 2581 ggccgcacgc gcggtggcgt atgcgtcatg cattcaatca gccataacct ccatactaca 2641 aattgctgcc tctgccctag tggtcaacag ggccgtgaaa agaatgtttg gcacacgcac 2701 tgctgctttg tctctagagg gcccccccaa agaacacaaa tgcagagtcc accaggctaa 2761 agccgcagga aaagggccca ttggccatga tgacatggtt gataaatatg gcctatgcga 2821 gactgaggag gatgaagaag tagtccacac tgagatacca tctgccacca tggaaggtaa 2881 gaacaaagga aagaacaaga aagggcgcgg ccgaaagaac aactacaacg ccttttcccg 2941 tagggggctc aatgacgaag agtacgagga gtacaagaaa atacgggaag agaagggtgg 3001 aaattacagc attcaggagt acctagagga tagacaaaga tatgaagagg agcttgctga 3061 ggttcaagca ggtggagatg gaggaatcgg tgaaactgaa atggaaatcc gccacagagt 3121 gttctacaag tctaagagta agaagcacca ccaggaagaa cgacgccaac tggggttagt 3181 cacaggttct gacatccgga aaagaaaacc aattgactgg acccccccta agtcagcatg 3241 ggcagatgat gagcgtgaag tggactacaa tgagaggatc aactttgagg cgccccccac 3301 cttgtggagc cgggtcacaa agtttggatc tgggtggggc ttctgggtca gtcccacagt 3361 cttcataacc acaacgcacg ttataccaac cagtgcaaaa gagttctttg gtgaacccct 3421 tgccagcata gccatccata gagccggaga attcaccctc ttcaggttct ctaagaaaat 3481 caggcccgat ctcacgggta tgattcttga ggaaggttgc ccagagggta cggtgtgctc 3541 agtattaata aaaagggact ccggtgagct actaccactg gctgtaagaa tgggcgcaat 3601 agcatcaatg cgcatacagg gtcgccttgt ccatggccag tctggtatgt tgctcactgg 3661 ggcgaatgct aaaggcatgg acctcggaac tattccaggg gattgtggag ctccctatgt 3721 ctataagaga gcaaatgact gggtggtttg tggtgtgcac gctgctgcca ctaaatcagg 3781 caacacggta gtgtgtgccg tccaggctag tgaaggggaa accacacttg aggggggtga 3841 caaaggtcac tacgccggac atgagataat caagcatgga tgtgggccag ccctgtcaac 3901 caaaacaaag ttctggaaat cgtcccctga accactgccc cctggagtct atgaacctgc 3961 atacctcggt ggtcgggatc caagagtgag tggtggcccc tcgctccaac aggtattacg 4021 ggatcagtta aaaccatttg ctgagccacg tgggcgtatg ccggaaccag gtctcctgga 4081 ggccgcagtt gagactgtga cctcatcact ggagcaggtt atggataccc cagtgccatg 4141 gagttacagc gatgcatgtc aatccctaga taaaactact agctctggtt ttccccatca 4201 caagaagaag aatgatgatt ggaacggcac cgccttcatt agggagttgg gagagcaggc 4261 agcgcacgcc aataatatgt acgaacaagc taagagcatg aagcccatgt acacggcggc 4321 gcttaaggat gaattagtga aaccagaaaa agtgtaccaa aaagtgaaga agcgcttgct 4381 ttggggagca gatctaggaa cagtgatccg ggccgcacgg gcctttggcc cattctgtga 4441 tgccataaaa tcccacacaa ttaaattacc tatcaaagtt ggaatgaatt caattgagga 4501 tgggccatta atttatgcag agcattcaaa atataaatat cactttgatg cagactatac 4561 ggcttgggac tcaacacaaa ataggcaaat tatgactgaa tcattctcaa tcatgtgtcg 4621 gctaactgct tctccagaat tggcatcagt ggtggcacaa gatcttcttg caccctcaga 4681 aatggacgtt ggcgactacg tcataagagt gaaggaaggc ctcccatctg gcttcccatg 4741 cacatcacaa gtcaatagca taaaccattg gttgataaca ttgtgcgccc tctctgaggt 4801 gactggcctg tcaccagatg ttatccagtc catgtcatac ttttcttttt atggtgatga 4861 tgaaatagtt tccactgaca tagaatttga cccagcaaag ctgacacaag tccttaaaga 4921 gtatggcctc aaacccaccc gccctgacaa gagtgaaggt ccaataattg tgaggaagag 4981 tgtggatggc ctggtcttct tacgtcgcac catttcccgc gacgccgcgg ggttccaggg 5041 gcgactggat cgtgcatcca ttgaaaggca gatctactgg accagagggc ccaatcactc 5101 agaccccttt gaaaccttgg tgccccacca gcaaagaaaa atccagctga tatcactgtt 5161 aggtgaggcc tcattgcatg gtgaaaaatt ctacaggaag atctcaagta aagtcatcca 5221 agagattaag acagggggtc ttgaaatgta tgtgccaggg tggcaagcca tgttccgctg 5281 gatgcggttc cacgaccttg gcctgtggac aggagatcgc aatctcctgc ccgaattcgt 5341 aaatgatgat ggcgtctaag gacgccccaa catcccctga tggcgccagt ggcgccggcc 5401 agctggtacc ggaggctaat acagctgagc aaatttcaat ggaccctgtt gcgggtgctt 5461 caacagcagt cgcgacagct gggcaagtta acatgattga cccatggatt ttcaataact 5521 tcgtccaggc acctcaagga gaattcacta tttcccctaa taataccccc ggtgatattt 5581 tgtttgattt acaactagga ccccacctta acccatttct agcccatctc tcacagatgt 5641 acaatggttg ggtcggcaat atgcgtgtgc gcatactgtt ggccgggaat gccttcacag 5701 ctggaaagat aatcatttgc tgtgtccccc ctggttttga tgccagaata ctcacaatag 5761 ctcaagcaac tctcttccca cacttaattg ctgatgtaag gacccttgag cctgtggagc 5821 ttcctttgga ggatgtgcgc aatgttctct tccacaacag tagccaaccg cagccaacaa 5881 tgcggttggt tgctatgttg tacactcccc tccgcactgg tggtggttcc ggaggcactg 5941 atgcctttgt ggtcgcgggt agggtgctta cgtgccccgc ccccgacttt agttttctgt 6001 ttctagtccc cccttccgtt gaacaaaaga ccagagtttt cagtgtcccc aacatacccc 6061 tgaaggatct ctcaaattcc cgtgtccctg tgccagtgca gggcatgttt atgtccccag 6121 atgttaatca gtcagtccag tttcagaatg gacgctgcca aattgatggt caactccaag 6181 gcaccactcc agtctcgctc agccaactct gcaagattag gggtaaaact tctagcaatg 6241 ctagggtgct taacttaagt gaggtggatg gcacaccctt catcccactt gaatcaccag 6301 cgccagttgg ttttcccgac ttgggaggtt gtgattggca tgtaaatttc actttccagg 6361 ctcaaaatca ggacccatct caaagtgtaa cctttgcaac taatgatgct agctttgtcc 6421 cctatctagg tagtatctct cctcacaatg ggggagattt tcatgcaggt gacatcatag 6481 gtagccttgg ttggatttca gccccgtctg ataattcaca acttaatgtt tggacaatac 6541 caaagtatgg atctagtctc ccagatgtca ctcatcttgc ccctgctgtg ttccccccag 6601 gctttgggga ggtgatcttg tacttctatt ctaccttccc aggttctgga caatccagcc 6661 aacttcaagt cccatgcttg ttgcctcagg agtttatcac ccacttctgt aacgaacagg 6721 ctcccatcgc tggggaggct gccctcctcc actacgtgga ccctgatacg gggcgaaatt 6781 tgggagaatt caaactttac cctgatgggt ttatgacctg tgtccccaat agtgttagta 6841 gtggccctca aacccttcct atcaatggag tctttgtctt tgtttcatgg gtatctagat 6901 tctatcaact caagcctgtg ggaacggcct cagcggctag aaggcttgga ttgcggcgca 6961 tataatggcc caagctgtca tcggtgccat agccgcatct gccgctggta gcatactagg 7021 ggcaggcata caggctggtg ctgaggctgg tctccaggct caacggtatc agcaggatct 7081 gcagttgcaa caaaattctt tcaagcatga taaggaaatg ttaggttacc aagttcaggc 7141 tagtaatgct ctcttagcta agaatcttaa cactagatat gctcttctgc aggcaggggg 7201 cctatctagc gctgatgctg ctcgggcagt ggctggtgct cctgtcaccc gtatagtgga 7261 ctggaatggc acgcgcattg cggcgcccac ttcaagcacc actacactca gatctggtgg 7321 ttttatggct gtccctatac cattgtcttc aaagaccaag caaccagtga tgtctgggca 7381 ggataatcca aattatgctg cttcttctat ctctagaact gcttcatggg tgcaatctca 7441 aaattctatg aggtctgttt ctccttttca cagtgacgct ttgagaaccg tttgggttac 7501 accacccggt tcatcatcaa cttcatctgt gcaatctagt ttctatggtg tttttaatac 7561 agatagattg cctctgttcg caaacagaag gtaataaaat ttttgtaata ggatgccagt 7621 gggcaccata ttcagatttg gttttaatta gattgttttt aattaaaatt tggcttaatt 7681 ggtg //