Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MK236608 | GI.6 | |
|
|---|---|---|---|
| GI.P11 |
ORF1: 1..5324
ORF2: 5308..6930
ORF3: 6930..7559
LOCUS MK236608 7607 bp RNA linear VRL 30-JAN-2019
DEFINITION Norovirus GI isolate NVRL17W01250 nonstructrual polyprotein (ORF1)
gene, partial cds; and VP2 (ORF2) and VP3 (ORF3) genes, complete
cds.
ACCESSION MK236608
VERSION MK236608.1
DBLINK BioProject: PRJNA490520
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7607)
AUTHORS Yang,Z. and Coughlan,S.
CONSRTM Oarsa, Cfsan, Fda
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2018) OARSA, FDA, CFSAN, 8301 Muirkirk Rd.,
Laurel, MD 20708, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 11.0.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7607
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="NVRL17W01250"
/isolation_source="feces"
/host="Homo sapiens; female"
/db_xref="taxon:122928"
/country="Ireland"
/collection_date="14-Dec-2016"
/note="genotype: GI"
gene <1..5324
/gene="ORF1"
CDS <1..5324
/gene="ORF1"
/codon_start=3
/product="nonstructrual polyprotein"
/protein_id="QAT98921.1"
/translation="NNNANNTSVTSRFLSRFKGLGGGASPPNPIKIKSTEMALGLIGK
TAQEAVGASDLPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVKSWEELDTSTKEEILD
SHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSVRDGVNLGVNRLTTVNGPEWNL
CPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTVGVHSPQAAFSVARVT
IQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCFEFCCQVMNLEDTWLQ
RRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGLVSQPFKNFLGKLKPL
NVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASLLPDFHLQGPEDLARD
LVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLEIFSLLKKYFFGGDQT
ERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEEEKARKLSAKNADPHV
ISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLAKRLANE
IRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNKLQAIADSAPLTLNCD
RIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQIRRVSPG
DTSALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTTINRLLIQAVALTMER
QDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLRGVTSMDGLKNALKGY
KIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAASIALTRLRAARAVAYA
SCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKEHKCRVHQAKAAGKGP
IGHDDMVDKYGLCETEEDEEVVHTEIPSATMEGKNKGKNKKGRGRKNNYNAFSRRGLN
DEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHRVFY
KSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDEREVDYNERINFEAPPT
LWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASIAIHRAGEFTLFRFSK
KIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGM
LLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKSGNTVVCAVQASEGET
TLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGGRDPRVSGG
PSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSDACQSLD
KTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYTAALKDELVKP
EKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMNSIEDGPLIYA
EHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSEMDVG
DYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEI
VSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAAGFQG
RLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKFYRKISSKV
IQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
gene 5308..6930
/gene="ORF2"
CDS 5308..6930
/gene="ORF2"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QAT98922.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6930..7559
/gene="ORF3"
CDS 6930..7559
/gene="ORF3"
/codon_start=1
/product="VP3"
/protein_id="QAT98923.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gcaataacaa cgctaacaac actagtgtta catctcgatt tctgtcgaga tttaagggtt
61 taggtggtgg cgcgagcccc cctaacccca taaagatcaa aagcacagaa atggccttgg
121 gtttgattgg caagacagcc caagaggcag taggtgccag tgacctaccg cccaaacagc
181 aaagagatcg gccccccaga acccaggagg aagttcagta cggcatgggg tggactgaaa
241 ggcccgtgga ccagaatgtt aagtcatggg aggaacttga cacctccacc aaggaagaaa
301 ttttggacag ccacaaagaa tggttcgacg ccggcggttt gggcccgtgc accatgccct
361 caacttgtga acaggctaaa gatgacagcc cacctggtga gcaagtcaga tggtcagtgc
421 gtgatggagt caaccttgga gtgaaccgtc tcacgacagt gaatggcccc gagtggaacc
481 tctgcccttt accccccatt gacctaagga atatggaacc agccagtgaa cccaccattg
541 gagacatgat agagttttat gaaggccaca tctaccacta ctccatatac attgggcaag
601 ggaagacagt tggtgttcat tccccacagg cagcattctc agtggctaga gtaaccatcc
661 aacctatagc tgcttggtgg agggtttgtt atatacccca gcccaaacat agactgagtt
721 atgaccaact tagggaattg gaaaatgaac cctggccata tgcagctatc accaacaatt
781 gttttgagtt ttgttgtcaa gtcatgaatc ttgaggacac atggttgcag aggcggctaa
841 taacatcagg tagattccac catccttccc agtcttggtc acaacagacc cctgaatttc
901 agcaggacag taaactggag ctggttaggg atgccatact ggccgcagtg aatggccttg
961 tctcacaacc cttcaagaat ttcttgggca agctcaagcc tcttaatgta ttaaacatcc
1021 tatctaactg tgactggact tttatggggg tggtagagat ggttatacta cttcttgagc
1081 tctttggcgt gttctggaac ccgcccgatg tgtctaattt tatagcatct ctcctccctg
1141 acttccacct ccagggacca gaagacctgg cccgggattt ggtgccagtc attcttggtg
1201 gcataggact agccattgga tttaccagag ataaagtcac caaggtcatg aagagtgctg
1261 tggatggact ccgggccgct acacagctgg ggcaatacgg gttggaaata ttctcactcc
1321 tcaaaaagta tttctttggt ggggatcaga ccgaacggac cctcaaaggc attgaaacag
1381 cagtcataga catggaggtt ttgtcctcca catcagtgac acaactggtg agagacaagc
1441 aggcagctaa agcttacatg aacatcctgg ataatgaaga ggaaaaggct agaaaactct
1501 ctgctaagaa tgctgacccc catgtaatat cctcaacaaa tgccctaata tcacgtatag
1561 ccatggcgcg atccgctctg gctaaggctc aggctgagat gaccagccga atgaggccag
1621 ttgtcatcat gatgtgtgga ccccctggaa ttggtaaaac taaagcagcg gagcacttgg
1681 caaaacgcct agctaatgag atcaggcctg gtggcaaagt gggactggta ccacgtgagg
1741 ctgttgacca ctgggatggc taccatggtg aggaagtgat gctatgggat gactatggta
1801 tgacaaagat acaagatgac tgcaacaagc tccaggctat tgctgactct gccccactca
1861 ctctcaattg tgataggatt gaaaataaag ggatgcagtt tgtgtcagat gcaatagtca
1921 tcaccaccaa cgctccaggg cctgcccctg tggactttgt caaccttggc cctgtgtgta
1981 gacgggttga cttcctggtc tactgttccg ccccagaggt agagcagata aggagagtca
2041 gccctggaga cacgtcggca cttaaagact gcttcaagtc agatttctcc cacctgaaga
2101 tggagttagc tcctcaaggg gggtttgaca accaggggaa cacaccattc ggcaagggtg
2161 tcatgaaacc aacaaccatc aacaggctcc tcatacaagc tgtggctctc accatggaga
2221 gacaggatga gttccgtctc caagggaaga tgtatgattt tgatgatgat agggtgtcag
2281 cctttaccac catggcacgc gataacggat tgggcatcct gagtatggcg agcctaggta
2341 agaagctgcg cggtgtcaca tcgatggatg gcctgaagaa tgctttgaaa gggtataaaa
2401 ttggtgcgtg cacaatcaag tggcaggcca aggtgtattc actagagtca gatggcaaca
2461 gcgttaacat cagggaggag aagaatgtct tgactcaaca acagcagtcg gtgtgcgctg
2521 cctctattgc actcacccgt ctgcgggccg cacgcgcggt ggcgtatgcg tcatgcattc
2581 aatcagccat aacctccata ctacaaattg ctgcctctgc cctagtggtc aacagggccg
2641 tgaaaagaat gtttggcaca cgcactgctg ctttgtctct agagggcccc cccaaagaac
2701 acaaatgcag agtccaccag gctaaagccg caggaaaagg gcccattggc catgatgaca
2761 tggttgataa atatggccta tgcgagactg aggaggatga agaagtagtc cacactgaga
2821 taccatctgc caccatggaa ggtaagaaca aaggaaagaa caagaaaggg cgcggccgaa
2881 agaacaacta caacgccttt tcccgtaggg ggctcaatga cgaagagtac gaggagtaca
2941 agaaaatacg ggaagagaag ggtggaaatt acagcattca ggagtaccta gaggatagac
3001 aaagatatga agaggagctt gctgaggttc aagcaggtgg agatggagga atcggtgaaa
3061 ctgaaatgga aatccgccac agagtgttct acaagtctaa gagtaagaag caccaccagg
3121 aagaacgacg ccaactgggg ttagtcacag gttctgacat ccggaaaaga aaaccaattg
3181 actggacccc ccctaagtca gcatgggcag atgatgagcg tgaagtggac tacaatgaga
3241 ggatcaactt tgaggcgccc cccaccttgt ggagccgggt cacaaagttt ggatctgggt
3301 ggggcttctg ggtcagtccc acagtcttca taaccacaac gcacgttata ccaaccagtg
3361 caaaagagtt ctttggtgaa ccccttgcca gcatagccat ccatagagcc ggagaattca
3421 ccctcttcag gttctctaag aaaatcaggc ccgatctcac gggtatgatt cttgaggaag
3481 gttgcccaga gggtacggtg tgctcagtat taataaaaag ggactccggt gagctactac
3541 cactggctgt aagaatgggc gcaatagcat caatgcgcat acagggtcgc cttgtccatg
3601 gccagtctgg tatgttgctc actggggcga atgctaaagg catggacctc ggaactattc
3661 caggggattg tggagctccc tatgtctata agagagcaaa tgactgggtg gtttgtggtg
3721 tgcacgctgc tgccactaaa tcaggcaaca cggtagtgtg tgccgtccag gctagtgaag
3781 gggaaaccac acttgagggg ggtgacaaag gtcactacgc cggacatgag ataatcaagc
3841 atggatgtgg gccagccctg tcaaccaaaa caaagttctg gaaatcgtcc cctgaaccac
3901 tgccccctgg agtctatgaa cctgcatacc tcggtggtcg ggatccaaga gtgagtggtg
3961 gcccctcgct ccaacaggta ttacgggatc agttaaaacc atttgctgag ccacgtgggc
4021 gtatgccgga accaggtctc ctggaggccg cagttgagac tgtgacctca tcactggagc
4081 aggttatgga taccccagtg ccatggagtt acagcgatgc atgtcaatcc ctagataaaa
4141 ctactagctc tggttttccc catcacaaga agaagaatga tgattggaac ggcaccgcct
4201 tcattaggga gttgggagag caggcagcgc acgccaataa tatgtacgaa caagctaaga
4261 gcatgaagcc catgtacacg gcggcgctta aggatgaatt agtgaaacca gaaaaagtgt
4321 accaaaaagt gaagaagcgc ttgctttggg gagcagatct aggaacagtg atccgggccg
4381 cacgggcctt tggcccattc tgtgatgcca taaaatccca cacaattaaa ttacctatca
4441 aagttggaat gaattcaatt gaggatgggc cattaattta tgcagagcat tcaaaatata
4501 aatatcactt tgatgcagac tatacggctt gggactcaac acaaaatagg caaattatga
4561 ctgaatcatt ctcaatcatg tgtcggctaa ctgcttctcc agaattggca tcagtggtgg
4621 cacaagatct tcttgcaccc tcagaaatgg acgttggcga ctacgtcata agagtgaagg
4681 aaggcctccc atctggcttc ccatgcacat cacaagtcaa tagcataaac cattggttga
4741 taacattgtg cgccctctct gaggtgactg gcctgtcacc agatgttatc cagtccatgt
4801 catacttttc tttttatggt gatgatgaaa tagtttccac tgacatagaa tttgacccag
4861 caaagctgac acaagtcctt aaagagtatg gcctcaaacc cacccgccct gacaagagtg
4921 aaggtccaat aattgtgagg aagagtgtgg atggcctggt cttcttacgt cgcaccattt
4981 cccgcgacgc cgcggggttc caggggcgac tggatcgtgc atccattgaa aggcagatct
5041 actggaccag agggcccaat cactcagacc cctttgaaac cttggtgccc caccagcaaa
5101 gaaaaatcca gctgatatca ctgttaggtg aggcctcatt gcatggtgaa aaattctaca
5161 ggaagatctc aagtaaagtc atccaagaga ttaagacagg gggtcttgaa atgtatgtgc
5221 cagggtggca agccatgttc cgctggatgc ggttccacga ccttggcctg tggacaggag
5281 atcgcaatct cctgcccgaa ttcgtaaatg atgatggcgt ctaaggacgc cccaacatcc
5341 cctgatggcg ccagtggcgc cggccagctg gtaccggagg ctaatacagc tgagcaaatt
5401 tcaatggacc ctgttgcggg tgcttcaaca gcagtcgcga cagctgggca agttaacatg
5461 attgacccat ggattttcaa taacttcgtc caggcacctc aaggagaatt cactatttcc
5521 cctaataata cccccggtga tattttgttt gatttacaac taggacccca ccttaaccca
5581 tttctagccc atctctcaca gatgtacaat ggttgggtcg gcaatatgcg tgtgcgcata
5641 ctgttggccg ggaatgcctt cacagctgga aagataatca tttgctgtgt cccccctggt
5701 tttgatgcca gaatactcac aatagctcaa gcaactctct tcccacactt aattgctgat
5761 gtaaggaccc ttgagcctgt ggagcttcct ttggaggatg tgcgcaatgt tctcttccac
5821 aacagtagcc aaccgcagcc aacaatgcgg ttggttgcta tgttgtacac tcccctccgc
5881 actggtggtg gttccggagg cactgatgcc tttgtggtcg cgggtagggt gcttacgtgc
5941 cccgcccccg actttagttt tctgtttcta gtcccccctt ccgttgaaca aaagaccaga
6001 gttttcagtg tccccaacat acccctgaag gatctctcaa attcccgtgt ccctgtgcca
6061 gtgcagggca tgtttatgtc cccagatgtt aatcagtcag tccagtttca gaatggacgc
6121 tgccaaattg atggtcaact ccaaggcacc actccagtct cgctcagcca actctgcaag
6181 attaggggta aaacttctag caatgctagg gtgcttaact taagtgaggt ggatggcaca
6241 cccttcatcc cacttgaatc accagcgcca gttggttttc ccgacttggg aggttgtgat
6301 tggcatgtaa atttcacttt ccaggctcaa aatcaggacc catctcaaag tgtaaccttt
6361 gcaactaatg atgctagctt tgtcccctat ctaggtagta tctctcctca caatggggga
6421 gattttcatg caggtgacat cataggtagc cttggttgga tttcagcccc gtctgataat
6481 tcacaactta atgtttggac aataccaaag tatggatcta gtctcccaga tgtcactcat
6541 cttgcccctg ctgtgttccc cccaggcttt ggggaggtga tcttgtactt ctattctacc
6601 ttcccaggtt ctggacaatc cagccaactt caagtcccat gcttgttgcc tcaggagttt
6661 atcacccact tctgtaacga acaggctccc atcgctgggg aggctgccct cctccactac
6721 gtggaccctg atacggggcg aaatttggga gaattcaaac tttaccctga tgggtttatg
6781 acctgtgtcc ccaatagtgt tagtagtggc cctcaaaccc ttcctatcaa tggagtcttt
6841 gtctttgttt catgggtatc tagattctat caactcaagc ctgtgggaac ggcctcagcg
6901 gctagaaggc ttggattgcg gcgcatataa tggcccaagc tgtcatcggt gccatagccg
6961 catctgccgc tggtagcata ctaggggcag gcatacaggc tggtgctgag gctggtctcc
7021 aggctcaacg gtatcagcag gatctgcagt tgcaacaaaa ttctttcaag catgataagg
7081 aaatgttagg ttaccaagtt caggctagta atgctctctt agctaagaat cttaacacta
7141 gatatgctct tctgcaggca gggggcctat ctagcgctga tgctgctcgg gcagtggctg
7201 gtgctcctgt cacccgtata gtggactgga atggcacgcg cattgcggcg cccacttcaa
7261 gcaccactac actcagatct ggtggtttta tggctgtccc tataccattg tcttcaaaga
7321 ccaagcaacc agtgatgtct gggcaggata atccaaatta tgctgcttct tctatctcta
7381 gaactgcttc atgggtgcaa tctcaaaatt ctatgaggtc tgtttctcct tttcacagtg
7441 acgctttgag aaccgtttgg gttacaccac ccggttcatc atcaacttca tctgtgcaat
7501 ctagtttcta tggtgttttt aatacagata gattgcctct gttcgcaaac agaaggtaat
7561 aaaatttttg taataggatg ccagtgggca ccatattcag atttggt
//