Typing tool
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Typing tool
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Complete norovirus genomes
| MK073893 | GI.3 | |
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| GI.P13 |
ORF1: 82..5397
ORF2: 5381..7015
ORF3: 7015..7662
LOCUS MK073893 7678 bp RNA linear VRL 07-FEB-2019
DEFINITION Norovirus GI.3 isolate Hu/USA/2016/GI.Pd-GI.3/Nashville-0047
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION MK073893
VERSION MK073893.1
DBLINK BioProject: PRJNA322324
KEYWORDS .
SOURCE Norovirus GI.3
ORGANISM Norovirus GI.3
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7678)
AUTHORS Steece,R., Moore,C., Britt,N., Kellem,R., Marine,R. and Castro,C.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2018) Polio and Picornavirus Laboratory Branch,
Centers for Disease Control and Prevention, 1600 Clifton Rd. NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7678
/organism="Norovirus GI.3"
/mol_type="genomic RNA"
/isolate="Hu/USA/2016/GI.Pd-GI.3/Nashville-0047"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:647516"
/country="USA: TN, Nashville"
/collection_date="03-Apr-2016"
/note="genotype: GI.Pd-GI.3"
gene 82..5397
/gene="ORF1"
CDS 82..5397
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZJ17765.1"
/translation="MAKIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPCRQTNNS
APKAQRDRPPRTASEVKRALGWDAEPEHQESTARAWCDLSKEEKEEIIRNNERLFDAG
GVTPSTLPSTFERTDSNSVTDEQQPVTWSSNGGVDLGINELTTVRGPFWNMCPLPPLE
ARNSGPAKEPLIGDMVEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAW
WRVCYIPTSQQRLTYEQLKELENEPWPYASITNNCYEFCCKVMALDDTWLQRRLVTSG
KFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLS
NCDWTFMGVVELVVLLAELFDVFWTPPDISSFIASLLPDFHLQGPEDLARDLVPLILG
GIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGI
EDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLDNEEEKARKLSVRSADPHIVTSVNNL
ISRISMARSALAKAQAELTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLAAEIRPGGKV
GLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGM
QFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQTRRAHPGDTNAIKD
LFKKDFSHLKMELAPQGGFDSQGNTPFGKGVMKTTTLNRLLIQATALAMERQDEFQLQ
GAVYNFDEDRVAAFTNLARANGLGLISMATLGKKLRSVKSMEGLRNALLGYKIGECDI
IWNTRVYSVKSDGSNVTIKEKQAPSSPQHQAISTATLALSRLRAARALAYASCLQSAV
LSILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKEHNCRIHRAEAAGHGPIGHDGII
ERYGLCESEQEGEDDQTVELPTADKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEE
YKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGL
RKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSR
VVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENISNIAIHRVGEFTQFRFSKKMRP
DLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTG
ANAKGMDLGTIPGDCGAPYIHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEG
GDQNKGHYAGHPILRYGSGPSLSTKTKFWKSNPQPLPPGTYEPAYLGGRDPRVEGGPS
LQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYGDACMSLDKT
TSSGYPHHKRKNDDWNGSSFVRELGDQAAHANSMYELGKSMKPVYTAALKDELVKPDK
VYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEH
SKYKYHFDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDY
VISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDDEIVS
TDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRL
DRNSIERQLWWTRGPNHDDPFETLVPHTQRKVQLISLLGEAALHGEKFYRKIASRVIQ
EVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 82..1212
/gene="ORF1"
/product="p48"
mat_peptide 1213..2301
/gene="ORF1"
/product="NTPase"
mat_peptide 2302..2901
/gene="ORF1"
/product="p22"
mat_peptide 2902..3321
/gene="ORF1"
/product="VPg"
mat_peptide 3322..3864
/gene="ORF1"
/product="Pro"
mat_peptide 3865..5394
/gene="ORF1"
/product="RdRp"
gene 5381..7015
/gene="ORF2"
CDS 5381..7015
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AZJ17766.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANADLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7015..7662
/gene="ORF3"
CDS 7015..7662
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AZJ17767.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 gcgtctaacg acgctattgc cgttgctgat gtcagcaata acaatgctaa caccaacaat
61 gaaaatatag gatctcgcct tatggcaaag atccgtgggc gcataggccc acaacgtggt
121 gaaacaacca caaagatcaa agatgccaac atggcgctcg accttttacg ccggtcacaa
181 acaccatctc catgtcggca aactaataac agcgccccca aggctcaaag ggaccgtccc
241 ccgcggaccg cttcagaggt aaaaagggcg ctggggtggg atgctgaacc agaacaccaa
301 gaaagcacgg ctagggcatg gtgtgacctc tcaaaagagg agaaggaaga gataatacgt
361 aacaatgaga ggctttttga tgctggaggt gtcactccat cgaccctgcc cagcacattt
421 gagaggactg attcaaacag tgtcactgac gagcaacaac ctgtgacatg gtcttctaat
481 ggaggggttg accttggcat caatgaattg accacagttc gtggcccgtt ttggaatatg
541 tgccccctcc caccactaga agcccgcaat agtggccctg ctaaggaacc ccttataggt
601 gacatggtcg agttctatga aggacacata ttccattatg ccatttacat tgggcagggc
661 aaaactattg gagtccactc accacaggct gctttttcca tacccagaat aaccatccac
721 ccactggtgg cctggtggcg tgtgtgttac atccccacta gccaacaacg ccttacctac
781 gaacagctta aggagttgga gaatgaacca tggccttatg cctcaatcac caacaactgt
841 tatgagtttt gctgtaaagt gatggcactt gatgatacct ggctccaaag aagactggtt
901 actagtggaa aatttaacca ccccacacag gactggtcac aggacacccc agatttccat
961 caggattcga agcttgaaat ggtaagggac gctgtcttgt cggccatcaa cggtcttgta
1021 tcacaaccct tcaagaacat cctgtctaaa attaaaccat taaatgtgct taatctttta
1081 tcaaactgtg attggacctt catgggcgtc gtggaactgg tagtgctcct ggcagaactg
1141 tttgatgtgt tctggacccc accagacatt tcaagcttca ttgcatcttt actacctgat
1201 tttcatctac aaggcccaga agacctagcc agggacttag ttcccctcat attaggtggc
1261 ataggcttag caattggttt tacaagagac aaaataacaa aagtgatgaa gagcgccgtt
1321 gatggactgc ggtcagcaac gcagctcgga caatatggac tggagatatt ctcaattatc
1381 aagaaatact tctttggagg ggaccaaaca gaaaagaccc tgcggggcat tgaagatgcg
1441 gtgatagaca tggaagtgtt gtccagtacc aatgtgacgc aactggtcaa agataagaag
1501 ttagccaaag cttacatgaa tgtactggac aatgaggagg aaaaagcaag gaagctctca
1561 gtccgtagtg ctgacccaca tatagtgacc tctgtcaaca acttgatatc acgcatctct
1621 atggcaagat cagctctagc taaagcccaa gctgagttga cgtcccgccc acgaccagtg
1681 gttataatga tgtgtggtcc tcctggcatc ggaaagacta aggccgctga gcacctagcc
1741 ggccggctag ctgctgaaat cagacctgga ggtaaagttg gccttgtacc ccgggagtcc
1801 atagaccatt gggatggata tcatggcgag gacgtcttgc tctgggatga ctatggcatg
1861 tcaaagataa cagaggattg taataagtta caggctatag ctgatactgc accactgtca
1921 cttaattgtg acagaataga aaacaaaggc atgcaattct cttctgatgc aataattata
1981 accaccaatg cccctggccc agccccagtt gactttgtca acttaggccc cgtgtgcaga
2041 cgagtggact ttttagttta ctgttctgca cccgagattg aacaaacgcg gagggctcat
2101 ccaggtgaca ccaatgccat caaggatctg tttaaaaagg acttctcaca cttgaaaatg
2161 gaactggctc cacagggcgg ctttgatagt cagggcaaca caccttttgg gaagggtgtc
2221 atgaaaacca caactctcaa taggctactg atacaggcca cagcattagc catggagcga
2281 caagatgaat tccaactcca gggggctgtc tacaactttg acgaggatag agtggccgcc
2341 ttcaccaatc tagctcgagc taatggcctg gggcttataa gtatggcaac attaggcaag
2401 aagctgagaa gtgttaagtc catggaaggc ttgcgcaatg cactactggg atacaagatt
2461 ggagaatgtg atataatctg gaacaccagg gtgtattcag ttaagagtga cgggagcaat
2521 gtcacaatca aagaaaagca ggcaccgtcc tcaccccaac atcaagctat ttccacagcc
2581 accctggcgc tctctagact gcgggctgcc agagcccttg cgtatgcttc ctgtttacaa
2641 agtgcagtgt tgtcaatact tcaggttgcc ggctctgcct tagtggtgag cagggctgta
2701 aaacgcatgt ttggcacacg caccgaacag cccattttgg agggtaagca taaagaacac
2761 aactgcagga tacaccgtgc agaggccgcc ggtcatggcc ccattggtca tgatggaatc
2821 attgaacgtt atggtctgtg tgagagtgag caggaaggag aagatgacca aactgtggag
2881 ctgcccactg ctgacaaaga aggcaagaac aaaggcaaga ccaaaaaggg ccgcggacgg
2941 aaatccaact tcaatgcatt ctctaggcgt ggacttagtg atgaggaata cgaggagtac
3001 aagaaagtaa gagaagagaa gggtggcaac tacagcatac aagagtacct tgaggaccgc
3061 cagcgctatg aagaagaact cgctgaggtg caagctggtg gagatggtgg aatcggcgaa
3121 actgaagctg agatccgcca ccgcgttttc tataaatcaa agtctggctt gagaaaacag
3181 cggcaagagg aacgccgcca gttaggcctc gtgagcggta ctgaaatccg caaacgcaaa
3241 cccatagact ggaccccccc caaaaatgat tggtcagagg acactagaac tgttaattat
3301 gatgaacaca tcagctttga agccccccct tcaatctgga gtagagtagt taaatttggc
3361 agtggctggg gtttttgggt gagttcaaca gtgttcatca ccacaacaca tgttatacca
3421 cctggtgcta aagagatctt tggtgagaac attagcaata ttgccatcca tagagttggc
3481 gaattcaccc aattccgttt ctccaagaaa atgaggcctg acctctctgg catggtcctg
3541 gaagagggat gccctgaggg cacagtgtgc accataatga taaaaagaga ctctggagag
3601 ctgttgccgc tggctgttcg tatgggagca gtggcctcaa tgaagatcca agggaagctt
3661 atgcatggac agtcagggat gttgctcacc ggtgctaacg ccaagggcat ggaccttggt
3721 accatacctg gggattgtgg agcgccctat atccacaaga gagggaatga ctgggtggtt
3781 tgtggggtgc atgcagcagc cacgaaatca ggcaataccg tggtgtgcgc catacaaggt
3841 ggtgaaggtg aagccacgct agagggtggc gatcaaaata agggtcatta tgcaggacac
3901 ccaatactaa gatatggtag tggcccttca ttgtcaacta aaacaaagtt ttggaaatca
3961 aacccccaac ctctaccccc tggtacatat gaaccagcct acctcggtgg cagagacccc
4021 agggttgaag gtggtccatc tttgcagcaa gtattgcgag accagctaaa accatttgct
4081 gagccccgtg gcaggttgcc tgaagcagga ctgctagaag ccgcggttga aactgtcacc
4141 aatgcaattg aacaggtcat ggacacacct gtggcatgga gttacggcga cgcctgcatg
4201 tccttggaca aaacaaccag ttctggctac cctcatcaca aaagaaagaa tgatgactgg
4261 aacgggagtt catttgtgag agaattggga gaccaggcag cgcatgctaa tagcatgtat
4321 gagcttggta aatctatgaa accagtgtac acagcagcac tcaaggatga gcttgttaag
4381 ccagacaagg tgtacaataa aattaagaaa aggctactct ggggggcgga cctcggcacc
4441 gtcatacgtg ctgctagggc ttttgggcca ttttgtgaag caataaagcc ccatgtgatt
4501 aagttaccca ttaaagtggg catgaatgcc atagaagatg gacccttaat ttatgcagaa
4561 cactccaaat ataagtatca ttttgatgct gattacacag catgggactc aacacaaaat
4621 agggagatta tgatggagtc ctttaacatc atgtgtaaac tcaccgctaa tccctccctg
4681 gccgcagtgg tggcacagga cctgctctct ccttctgaga tggatgtcgg cgattatgtg
4741 atcagtgtca aagatggcct accatctggc tttccatgca cctcacaagt gaacagtatc
4801 aaccattgga tctacacttt gtgcgcctta tcagaggtta ctggtttggc tcctgacgta
4861 atacagtcac agtcttactt ttcattttat ggtgatgatg aaatagtttc aacagatatt
4921 gaatttgact caaacagatt aacacaggtg ctaaaagagt atggcttaaa acccacaaga
4981 cctgataaaa ctgatggtcc gatcattgta aggcaacagg ttgatggctt ggttttcctt
5041 cggcgcacca tctcgaagga tgccatcggg taccagggtc ggcttgatcg caattccatt
5101 gaaagacagc tctggtggac ccgagggccc aatcatgatg atccatttga aaccttggtc
5161 ccacacacac agaggaaggt ccaattaata tccctattag gtgaggccgc actccatggt
5221 gagaaattct atagaaagat agccagtagg gtgatccagg aggttaaaga aggaggattg
5281 gaaatttaca tccctgggtg gcaggccatg ttccgctgga tgcgattcca tgatttgagt
5341 ttgtggacag gagaccgcga tctcctgccc gattatgtaa atgatgatgg cgtctaagga
5401 cgccccaaca aacatggatg gcaccagtgg tgccggccag ctggtaccag aggcaaatac
5461 agctgagcct atatcaatgg agccagtggc tggggcagcg acagctgccg caaccgctgg
5521 tcaagttaat atgattgacc cctggattat gaataattat gtgcaagccc cacaaggtga
5581 attcaccata tcaccaaaca acacaccagg tgatattcta tttgatttac aattaggccc
5641 tcacctcaac ccctttttat cccatttggc tcaaatgtac aatggatggg taggtaacat
5701 gaaagtgaaa gttttattgg caggtaatgc tttcacggca ggaaaaatta ttattagttg
5761 tataccccct ggttttgtct cacagaatat atctatagct caagctacaa tgttccccca
5821 cgttatagct gatgtcaggg tcctggagcc cattgaggtc ccattggagg atgtgaggaa
5881 tgtgttgttc cacaataacg ataacacacc aaccatgaga ctggtatgca tgctctacac
5941 ccccttgcgt gccagcggaa gctcatctgg gacagacccc tttgtgattg ctgggcgtgt
6001 gttgacttgc cctagtcctg attttagctt cttattctta gtgcccccca atgtagaaca
6061 aaagactaaa ccttttagtg tcccagatct cccactcaat gttctatcaa attcaagggt
6121 gccgtcactg ataaaattca tgatggtgtc acaggaccac ggacagatgg tacaatttca
6181 gaatggcagg gtcacactgg atggacagct ccagggcacc acaccaacat cggccagcca
6241 gctctgcaag atgcggggga cggtttacca tgcctccggt ggtcaagggc tcaatttaac
6301 tgagattgat ggcaccccct atcatgcatt tgaaagccca gctcccattg gtttccctga
6361 cataggagac agcgattggc acatcaacgc ttcacccgcc accgccttcg gcagtggcga
6421 aagcgtcaaa agactagata tggaacaggg ctcttcattt gccccacatt tgggtactgt
6481 acactatact aatgccagct atgaagccaa tgctgatttg atctgctcat tggagtggct
6541 atccccgcct agcggaggca ctccaaacaa agtcaatcct tgggccatcc cacggtatgg
6601 ttcaactttg actgaagctg ctcagctggc cccaccaatt tacccccctg gctttggaga
6661 agctatagtt ttctttatgt ctgactttcc tatagcaaat ggtcaagatg ggttaagagt
6721 gccctgcact ataccccaag aatttgtaac ccattttgtc aatgaacaag caccaacccg
6781 tggggaagct gcccttcttc attatgttga tcccgacaca caccgcaatt tgggtgagtt
6841 taagttatac cctgaaggat ttatgacttg tgtaccaaat tccagtggta gtggtcccca
6901 aacgctgcct atcaatggag tcttcacttt tgtctcttgg gtttctcgtt tctatcaact
6961 aaagcctgtg ggaacgaccg gaccggttcg taggctagga atcaggagat cataatggcc
7021 caggcaatat ttggagcaat agctgcgacg gctgctggta gcgctgtggg tgcaggcatt
7081 caggctggta ctgaggccgc actccaacat cagcggttcc agcaggattt aacgttgcag
7141 agcaacactt tcaaacatga caaagaaatg ctagggctac aggttggtgc ttccactgct
7201 ctcttgcaaa acagcctcaa cacccgctac aacatgctca caaatgctgg cctctcgtcc
7261 tcagatgcag cacgcgtggt ggttggcgcg ccagccacac gtgttgttga ctggaacggc
7321 accagggtgt cagcaccaca atctacagct accacgttga ggtctggtgg gttcatgaca
7381 atcccaactc tgtacaaggg caaacaacag caaaaagctc caactgaaat tggcttgtct
7441 aacccaaatt atggctcatc tgtgtcttct agggttgctg attgggtttc ctctcaaaat
7501 tcttctcgct catccttggg cccgtatcac cccagtgctt tgcagacaac atgggtgacc
7561 ccacccggtt ctagttctac ttctactatt tcttctgtgt ctactgcacc tagatatttc
7621 aatactgata ggttgcctct attcgcaaat atgaggaagt aatttttgta atatgaaa
//