Typing tool
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Typing tool
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Complete norovirus genomes
| MK073892 | GI.3 | |
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| GI.P13 |
ORF1: 91..5406
ORF2: 5390..7024
ORF3: 7024..7671
LOCUS MK073892 7692 bp RNA linear VRL 07-FEB-2019
DEFINITION Norovirus GI.3 isolate Hu/USA/2016/GI.Pd-GI.3/Nashville-0046
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION MK073892
VERSION MK073892.1
DBLINK BioProject: PRJNA322324
KEYWORDS .
SOURCE Norovirus GI.3
ORGANISM Norovirus GI.3
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7692)
AUTHORS Steece,R., Moore,C., Britt,N., Kellem,R., Marine,R. and Castro,C.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2018) Polio and Picornavirus Laboratory Branch,
Centers for Disease Control and Prevention, 1600 Clifton Rd. NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7692
/organism="Norovirus GI.3"
/mol_type="genomic RNA"
/isolate="Hu/USA/2016/GI.Pd-GI.3/Nashville-0046"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:647516"
/country="USA: TN, Nashville"
/collection_date="02-Apr-2016"
/note="genotype: GI.Pd-GI.3"
gene 91..5406
/gene="ORF1"
CDS 91..5406
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZJ17762.1"
/translation="MAKIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPCRQTNNS
APKAQRDRPPRTASEVKRALGWDAEPEHQESTARAWCDLSKEEKEEIIRNNERLFDAG
GVTPSTLPSTFERTDSNSVTDEQQPVTWSSNGGVDLGINELTTVRGPFWNMCPLPPLE
ARNSGPAKEPLIGDMVEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAW
WRVCYIPTSQQRLTYEQLKELENEPWPYASITNNCYEFCCKVMALDDTWLQRRLVTSG
KFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLS
NCDWTFMGVVELVVLLAELFDVFWTPPDISSFIASLLPDFHLQGPEDLARDLVPLILG
GIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGI
EDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLDNEEEKARKLSVRSADPHIVTSVNNL
ISRISMARSALAKAQAELTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLAAEIRPGGKV
GLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGM
QFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQTRRAHPGDTNAIKD
LFKKDFSHLKMELAPQGGFDSQGNTPFGKGVMKTTTLNRLLIQATALAMERQDEFQLQ
GAVYNFDEDRVAAFTNLARANGLGLISMATLGKKLRSVKSMEGLRNALLGYKIGECDI
IWNTRVYSVKSDGSNVTIKEKQAPSSPQHQAISTATLALSRLRAARALAYASCLQSAV
LSILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKEHNCRIHRAEAAGHGPIGHDGII
ERYGLCESEQEGEDDQTVELPTADKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEE
YKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGL
RKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSR
VVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENISNIAIHRVGEFTQFRFSKKMRP
DLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTG
ANAKGMDLGTIPGDCGAPYIHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEG
GDQNKGHYAGHPILRYGSGPSLSTKTKFWKSNPQPLPPGTYEPAYLGGRDPRVEGGPS
LQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYGDACMSLDKT
TSSGYPHHKRKNDDWNGSSFVRELGDQAAHANSMYELGKSMKPVYTAALKDELVKPDK
VYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEH
SKYKYHFDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDY
VISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDDEIVS
TDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRL
DRNSIERQLWWTRGPNHDDPFETLVPHTQRKVQLISLLGEAALHGEKFYRKIASRVIQ
EVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 91..1221
/gene="ORF1"
/product="p48"
mat_peptide 1222..2310
/gene="ORF1"
/product="NTPase"
mat_peptide 2311..2910
/gene="ORF1"
/product="p22"
mat_peptide 2911..3330
/gene="ORF1"
/product="VPg"
mat_peptide 3331..3873
/gene="ORF1"
/product="Pro"
mat_peptide 3874..5403
/gene="ORF1"
/product="RdRp"
gene 5390..7024
/gene="ORF2"
CDS 5390..7024
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AZJ17763.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANADLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7024..7671
/gene="ORF3"
CDS 7024..7671
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AZJ17764.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 atgatgatgg cgtctaacga cgctattgcc gttgctgatg tcagcaataa caatgctaac
61 accaacaatg aaaatatagg atctcgcctt atggcaaaga tccgtgggcg cataggccca
121 caacgtggtg aaacaaccac aaagatcaaa gatgccaaca tggcgctcga ccttttacgc
181 cggtcacaaa caccatctcc atgtcggcaa actaataaca gcgcccccaa ggctcaaagg
241 gaccgtcccc cgcggaccgc ttcagaggta aaaagggcgc tggggtggga tgctgaacca
301 gaacaccaag aaagcacggc tagggcatgg tgtgacctct caaaagagga gaaggaagag
361 ataatacgta acaatgagag gctttttgat gctggaggtg tcactccatc gaccctgccc
421 agcacatttg agaggactga ttcaaacagt gtcactgacg agcaacaacc tgtgacatgg
481 tcttctaatg gaggggttga ccttggcatc aatgaattga ccacagttcg tggcccgttt
541 tggaatatgt gccccctccc accactagaa gcccgcaata gtggccctgc taaggaaccc
601 cttataggtg acatggtcga gttctatgaa ggacacatat tccattatgc catttacatt
661 gggcagggca aaactattgg agtccactca ccacaggctg ctttttccat acccagaata
721 accatccacc cactggtggc ctggtggcgt gtgtgttaca tccccactag ccaacaacgc
781 cttacctacg aacagcttaa ggagttggag aatgaaccat ggccttatgc ctcaatcacc
841 aacaactgtt atgagttttg ctgtaaagtg atggcacttg atgatacctg gctccaaaga
901 agactggtta ctagtggaaa atttaaccac cccacacagg actggtcaca ggacacccca
961 gatttccatc aggattcgaa gcttgaaatg gtaagggacg ctgtcttgtc ggccatcaac
1021 ggtcttgtat cacaaccctt caagaacatc ctgtctaaaa ttaaaccatt aaatgtgctt
1081 aatcttttat caaactgtga ttggaccttc atgggcgtcg tggaactggt agtgctcctg
1141 gcagaactgt ttgatgtgtt ctggacccca ccagacattt caagcttcat tgcatcttta
1201 ctacctgatt ttcatctaca aggcccagaa gacctagcca gggacttagt tcccctcata
1261 ttaggtggca taggcttagc aattggtttt acaagagaca aaataacaaa agtgatgaag
1321 agcgccgttg atggactgcg gtcagcaacg cagctcggac aatatggact ggagatattc
1381 tcaattatca agaaatactt ctttggaggg gaccaaacag aaaagaccct gcggggcatt
1441 gaagatgcgg tgatagacat ggaagtgttg tccagtacca atgtgacgca actggtcaaa
1501 gataagaagt tagccaaagc ttacatgaat gtactggaca atgaggagga aaaagcaagg
1561 aagctctcag tccgtagtgc tgacccacat atagtgacct ctgtcaacaa cttgatatca
1621 cgcatctcta tggcaagatc agctctagct aaagcccaag ctgagttgac gtcccgccca
1681 cgaccagtgg ttataatgat gtgtggtcct cctggcatcg gaaagactaa ggccgctgag
1741 cacctagccg gccggctagc tgctgaaatc agacctggag gtaaagttgg ccttgtaccc
1801 cgggagtcca tagaccattg ggatggatat catggcgagg acgtcttgct ctgggatgac
1861 tatggcatgt caaagataac agaggattgt aataagttac aggctatagc tgatactgca
1921 ccactgtcac ttaattgtga cagaatagaa aacaaaggca tgcaattctc ttctgatgca
1981 ataattataa ccaccaatgc ccctggccca gccccagttg actttgtcaa cttaggcccc
2041 gtgtgcagac gagtggactt tttagtttac tgttctgcac ccgagattga acaaacgcgg
2101 agggctcatc caggtgacac caatgccatc aaggatctgt ttaaaaagga cttctcacac
2161 ttgaaaatgg aactggctcc acagggcggc tttgatagtc agggcaacac accttttggg
2221 aagggtgtca tgaaaaccac aactctcaat aggctactga tacaggccac agcattagcc
2281 atggagcgac aagatgaatt ccaactccag ggggctgtct acaactttga cgaggataga
2341 gtggccgcct tcaccaatct agctcgagct aatggcctgg ggcttataag tatggcaaca
2401 ttaggcaaga agctgagaag tgttaagtcc atggaaggct tgcgcaatgc actactggga
2461 tacaagattg gagaatgtga tataatctgg aacaccaggg tgtattcagt taagagtgac
2521 gggagcaatg tcacaatcaa agaaaagcag gcaccgtcct caccccaaca tcaagctatt
2581 tccacagcca ccctggcgct ctctagactg cgggctgcca gagcccttgc gtatgcttcc
2641 tgtttacaaa gtgcagtgtt gtcaatactt caggttgccg gctctgcctt agtggtgagc
2701 agggctgtaa aacgcatgtt tggcacacgc accgaacagc ccattttgga gggtaagcat
2761 aaagaacaca actgcaggat acaccgtgca gaggccgccg gtcatggccc cattggtcat
2821 gatggaatca ttgaacgtta tggtctgtgt gagagtgagc aggaaggaga agatgaccaa
2881 actgtggagc tgcccactgc tgacaaagaa ggcaagaaca aaggcaagac caaaaagggc
2941 cgcggacgga aatccaactt caatgcattc tctaggcgtg gacttagtga tgaggaatac
3001 gaggagtaca agaaagtaag agaagagaag ggtggcaact acagcataca agagtacctt
3061 gaggaccgcc agcgctatga agaagaactc gctgaggtgc aagctggtgg agatggtgga
3121 atcggcgaaa ctgaagctga gatccgccac cgcgttttct ataaatcaaa gtctggcttg
3181 agaaaacagc ggcaagagga acgccgccag ttaggcctcg tgagcggtac tgaaatccgc
3241 aaacgcaaac ccatagactg gacccccccc aaaaatgatt ggtcagagga cactagaact
3301 gttaattatg atgaacacat cagctttgaa gccccccctt caatctggag tagagtagtt
3361 aaatttggca gtggctgggg tttttgggtg agttcaacag tgttcatcac cacaacacat
3421 gttataccac ctggtgctaa agagatcttt ggtgagaaca ttagcaatat tgccatccat
3481 agagttggcg aattcaccca attccgtttc tccaagaaaa tgaggcctga cctctctggc
3541 atggtcctgg aagagggatg ccctgagggc acagtgtgca ccataatgat aaaaagagac
3601 tctggagagc tgttgccgct ggctgttcgt atgggagcag tggcctcaat gaagatccaa
3661 gggaagctta tgcatggaca gtcagggatg ttgctcaccg gtgctaacgc caagggcatg
3721 gaccttggta ccatacctgg ggattgtgga gcgccctata tccacaagag agggaatgac
3781 tgggtggttt gtggggtgca tgcagcagcc acgaaatcag gcaataccgt ggtgtgcgcc
3841 atacaaggtg gtgaaggtga agccacgcta gagggtggcg atcaaaataa gggtcattat
3901 gcaggacacc caatactaag atatggtagt ggcccttcat tgtcaactaa aacaaagttt
3961 tggaaatcaa acccccaacc tctaccccct ggtacatatg aaccagccta cctcggtggc
4021 agagacccca gggttgaagg tggtccatct ttgcagcaag tattgcgaga ccagctaaaa
4081 ccatttgctg agccccgtgg caggttgcct gaagcaggac tgctagaagc cgcggttgaa
4141 actgtcacca atgcaattga acaggtcatg gacacacctg tggcatggag ttacggcgac
4201 gcctgcatgt ccttggacaa aacaaccagt tctggctacc ctcatcacaa aagaaagaat
4261 gatgactgga acgggagttc atttgtgaga gaattgggag accaggcagc gcatgctaat
4321 agcatgtatg agcttggtaa atctatgaaa ccagtgtaca cagcagcact caaggatgag
4381 cttgttaagc cagacaaggt gtacaataaa attaagaaaa ggctactctg gggggcggac
4441 ctcggcaccg tcatacgtgc tgctagggct tttgggccat tttgtgaagc aataaagccc
4501 catgtgatta agttacccat taaagtgggc atgaatgcca tagaagatgg acccttaatt
4561 tatgcagaac actccaaata taagtatcat tttgatgctg attacacagc atgggactca
4621 acacaaaata gggagattat gatggagtcc tttaacatca tgtgtaaact caccgctaat
4681 ccctccctgg ccgcagtggt ggcacaggac ctgctctctc cttctgagat ggatgtcggc
4741 gattatgtga tcagtgtcaa agatggccta ccatctggct ttccatgcac ctcacaagtg
4801 aacagtatca accattggat ctacactttg tgcgccttat cagaggttac tggtttggct
4861 cctgacgtaa tacagtcaca gtcttacttt tcattttatg gtgatgatga aatagtttca
4921 acagatattg aatttgactc aaacagatta acacaggtgc taaaagagta tggcttaaaa
4981 cccacaagac ctgataaaac tgatggtccg atcattgtaa ggcaacaggt tgatggcttg
5041 gttttccttc ggcgcaccat ctcgaaggat gccatcgggt accagggtcg gcttgatcgc
5101 aattccattg aaagacagct ctggtggacc cgagggccca atcatgatga tccatttgaa
5161 accttggtcc cacacacaca gaggaaggtc caattaatat ccctattagg tgaggccgca
5221 ctccatggtg agaaattcta tagaaagata gccagtaggg tgatccagga ggttaaagaa
5281 ggaggattgg aaatttacat ccctgggtgg caggccatgt tccgctggat gcgattccat
5341 gatttgagtt tgtggacagg agaccgcgat ctcctgcccg attatgtaaa tgatgatggc
5401 gtctaaggac gccccaacaa acatggatgg caccagtggt gccggccagc tggtaccaga
5461 ggcaaataca gctgagccta tatcaatgga gccagtggct ggggcagcga cagctgccgc
5521 aaccgctggt caagttaata tgattgaccc ctggattatg aataattatg tgcaagcccc
5581 acaaggtgaa ttcaccatat caccaaacaa cacaccaggt gatattctat ttgatttaca
5641 attaggccct cacctcaacc cctttttatc ccatttggct caaatgtaca atggatgggt
5701 aggtaacatg aaagtgaaag ttttattggc aggtaatgct ttcacggcag gaaaaattat
5761 tattagttgt ataccccctg gttttgtctc acagaatata tctatagctc aagctacaat
5821 gttcccccac gttatagctg atgtcagggt cctggagccc attgaggtcc cattggagga
5881 tgtgaggaat gtgttgttcc acaataacga taacacacca accatgagac tggtatgcat
5941 gctctacacc cccttgcgtg ccagcggaag ctcatctggg acagacccct ttgtgattgc
6001 tgggcgtgtg ttgacttgcc ctagtcctga ttttagcttc ttattcttag tgccccccaa
6061 tgtagaacaa aagactaaac cttttagtgt cccagatctc ccactcaatg ttctatcaaa
6121 ttcaagggtg ccgtcactga taaaattcat gatggtgtca caggaccacg gacagatggt
6181 acaatttcag aatggcaggg tcacactgga tggacagctc cagggcacca caccaacatc
6241 ggccagccag ctctgcaaga tgcgggggac ggtttaccat gcctccggtg gtcaagggct
6301 caatttaact gagattgatg gcacccccta tcatgcattt gaaagcccag ctcccattgg
6361 tttccctgac ataggagaca gcgattggca catcaacgct tcacccgcca ccgccttcgg
6421 cagtggcgaa agcgtcaaaa gactagatat ggaacagggc tcttcatttg ccccacattt
6481 gggtactgta cactatacta atgccagcta tgaagccaat gctgatttga tctgctcatt
6541 ggagtggcta tccccgccta gcggaggcac tccaaacaaa gtcaatcctt gggccatccc
6601 acggtatggt tcaactttga ctgaagctgc tcagctggcc ccaccaattt acccccctgg
6661 ctttggagaa gctatagttt tctttatgtc tgactttcct atagcaaatg gtcaagatgg
6721 gttaagagtg ccctgcacta taccccaaga atttgtaacc cattttgtca atgaacaagc
6781 accaacccgt ggggaagctg cccttcttca ttatgttgat cccgacacac accgcaattt
6841 gggtgagttt aagttatacc ctgaaggatt tatgacttgt gtaccaaatt ccagtggtag
6901 tggtccccaa acgctgccta tcaatggagt cttcactttt gtctcttggg tttctcgttt
6961 ctatcaacta aagcctgtgg gaacgaccgg accggttcgt aggctaggaa tcaggagatc
7021 ataatggccc aggcaatatt tggagcaata gctgcgacgg ctgctggtag cgctgtgggt
7081 gcaggcattc aggctggtac tgaggccgca ctccaacatc agcggttcca gcaggattta
7141 acgttgcaga gcaacacttt caaacatgac aaagaaatgc tagggctaca ggttggtgct
7201 tccactgctc tcttgcaaaa cagcctcaac acccgctaca acatgctcac aaatgctggc
7261 ctctcgtcct cagatgcagc acgcgtggtg gttggcgcgc cagccacacg tgttgttgac
7321 tggaacggca ccagggtgtc agcaccacaa tctacagcta ccacgttgag gtctggtggg
7381 ttcatgacaa tcccaactct gtacaagggc aaacaacagc aaaaagctcc aactgaaatt
7441 ggcttgtcta acccaaatta tggctcatct gtgtcttcta gggttgctga ttgggtttcc
7501 tctcaaaatt cttctcgctc atccttgggc ccgtatcacc ccagtgcttt gcagacaaca
7561 tgggtgaccc cacccggttc tagttctact tctactattt cttctgtgtc tactgcacct
7621 agatatttca atactgatag gttgcctcta ttcgcaaata tgaggaagta atttttgtaa
7681 tatgaaatgt gg
//