Typing tool
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Typing tool
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Complete norovirus genomes
| MK073887 | GI.3 | |
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| GI.P13 |
ORF1: 89..5404
ORF2: 5388..7022
ORF3: 7022..7669
LOCUS MK073887 7691 bp RNA linear VRL 07-FEB-2019
DEFINITION Norovirus GI.3 isolate Hu/USA/2016/GI.Pd-GI.3/BayCity-0088
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION MK073887
VERSION MK073887.1
DBLINK BioProject: PRJNA322324
KEYWORDS .
SOURCE Norovirus GI.3
ORGANISM Norovirus GI.3
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7691)
AUTHORS Soehnlen,M., Riner,D., Mosher,L., Vavricka,V., Castro,C.J.,
Marine,R. and Rodeman,K.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2018) Polio and Picornavirus Laboratory Branch,
Centers for Disease Control and Prevention, 1600 Clifton Rd. NE,
Atlanta, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7691
/organism="Norovirus GI.3"
/mol_type="genomic RNA"
/isolate="Hu/USA/2016/GI.Pd-GI.3/BayCity-0088"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:647516"
/country="USA: MI, Midland County, Midland"
/collection_date="22-Mar-2016"
/note="genotype: GI.Pd-GI.3"
gene 89..5404
/gene="ORF1"
CDS 89..5404
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZJ17747.1"
/translation="MAKIRGRIGPQRGETTTKIKDANMALDLLRRSQTPSPCRQTNDS
APKAQRDRPPRTASEVRRALGWDAEPEHQESTARAWCDLSKEEKEEIIRNNERLFDAG
GVTPSTLPSTFERTDSNSVTDEQQPVTWSSNGGVDLGINELTTVRGPFWNMCPLPPLE
ARNSGPAKEPLIGDMVEFYEGHIFHYAIYIGQGKTIGVHSPQAAFSIPRITIHPLVAW
WRVCYIPTSQQRLTYEQLKELENEPWPYASITNNCYEFCCKVMALDDTWLQRRLVTSG
KFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGLVSQPFKNILSKIKPLNVLNLLS
NCDWTFMGVVELVVLLAELFDVFWTPPDISSFIASLLPDFHLQGPEDLARDLVPLILG
GIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLEIFSIIKKYFFGGDQTEKTLRGI
EDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLDNEEEKARKLSVRSADPHIVTSVNNL
ISRISMARSALAKAQAELTSRPRPVVIMMCGPPGIGKTKAAEHLAGRLAAEIRPGGKV
GLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNKLQAIADTAPLSLNCDRIENKGM
QFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEIEQMRRAHPGDTNAIKD
LFKKDFSHLKMELAPQGGFDNQGNTPFGKGVMKTTTLNRLLIQATALAMERQDEFQLQ
GAVYNFDEDRVAAFTNLARANGLGLISMATLGKKLRSVKSMEGLRNALLGYKIGECDI
IWNTRVYSVKSDGSNVTIKEKQAPSSPQHQAISTATLALSRLRAARALAYASCLQSAV
LSILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKEHNCRVHRAEAAGHGPIGHDGII
ERYGLCESEQEGEDDQTVELPTADKEGKNKGKTKKGRGRKSNFNAFSRRGLSDEEYEE
YKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEAEIRHRVFYKSKSGL
RKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSEDTRTVNYDEHISFEAPPSIWSR
VVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENISNIAIHRVGEFTQFRFSKKMRP
DLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMGAVASMKIQGKLMHGQSGMLLTG
ANAKGMDLGTIPGDCGAPYIHKRGNDWVVCGVHAAATKSGNTVVCAIQGGEGEATLEG
GDQNKGHYAGHPILRYGSGPSLSTKTKFWKSNPQPLPPGTYEPAYLGGRDPRVEGGPS
LQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAIEQVMDTPVAWSYGDACMSLDKT
TSSGYPHHKRKNDDWNGSSFVRELGDQAAHANSMYELGKSMKPVYTAALKDELVKPDK
VYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHVIKLPIKVGMNAIEDGPLIYAEH
SKYKYHFDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDY
VISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDDEIVS
TDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRL
DRNSIERQLWWTRGPNHDDPFETLVPHTQRKVQLISLLGEAALHGEKFYRKIASRVIQ
EVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
mat_peptide 89..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7022
/gene="ORF2"
CDS 5388..7022
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AZJ17748.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANADLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7022..7669
/gene="ORF3"
CDS 7022..7669
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AZJ17749.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 gatgatggcg tctaacgacg ctattgccgt tgctgatgtc agcaataaca atgctaacac
61 caacaatgaa aatataggat ctcgccttat ggcaaagatc cgtgggcgta taggcccaca
121 acgtggtgaa acaaccacaa agatcaaaga tgccaacatg gcgctcgacc ttttacgccg
181 gtcacaaaca ccatctccat gtcggcaaac taatgacagc gcccccaagg ctcaaaggga
241 ccgtcccccg cggaccgctt cagaggtaag aagggcgctg gggtgggatg ctgaaccaga
301 acaccaagaa agcacggcta gggcatggtg tgacctctca aaagaggaga aggaagagat
361 aatacgtaac aatgagaggc tttttgatgc tggaggtgtc actccatcga ccctgcccag
421 cacatttgag aggactgatt caaacagtgt cactgacgag caacaacctg tgacatggtc
481 ttctaatgga ggggttgacc ttggcatcaa tgaattgacc acagttcgtg gcccgttttg
541 gaatatgtgc cccctcccac cactagaagc ccgcaatagt ggccctgcta aggaacccct
601 tataggtgac atggtcgagt tctatgaagg acacatattc cattatgcca tttacattgg
661 acagggcaaa actattggag tccactcacc acaggctgct ttttccatac ccagaataac
721 catccaccca ctggtggcct ggtggcgtgt gtgttacatc cccactagcc aacaacgcct
781 tacctacgaa cagcttaagg agttggagaa tgaaccatgg ccttatgcct caatcaccaa
841 caactgttat gagttttgct gtaaagtgat ggcacttgat gatacctggc tccaaagaag
901 actggttact agtggaaaat ttaaccaccc cacacaggac tggtcacagg acaccccaga
961 tttccatcag gattcgaagc ttgaaatggt aagggacgct gtcttgtcgg ccatcaacgg
1021 tcttgtatca caacccttca agaacatcct gtctaaaatt aaaccattga atgtgcttaa
1081 tcttttatca aactgtgact ggaccttcat gggcgtcgtg gaactggtag tgctcctggc
1141 agaactgttt gatgtgttct ggaccccacc agacatttca agcttcattg catctttact
1201 acctgatttt catctacagg gcccagaaga cctagccagg gacttagtcc ccctcatatt
1261 aggtggcata ggcttagcaa ttggttttac aagagacaaa ataacaaaag tgatgaagag
1321 cgccgttgat ggactgcggt cagcaacgca gctcggacaa tatggactgg agatattctc
1381 aattatcaag aaatacttct ttggagggga ccaaacagaa aagaccctgc ggggcattga
1441 agatgcggtg atagacatgg aagtgttgtc cagtaccaat gtgacgcaac tggtcaaaga
1501 taagaagtta gccaaagctt acatgaatgt actggacaat gaggaggaga aagcaaggaa
1561 gctctcagtc cgtagtgctg acccacatat agtgacctct gtcaacaact tgatatcacg
1621 catctctatg gcaagatcag ctctggctaa agcccaagct gagttgacgt cccgcccacg
1681 accagtggtt ataatgatgt gtggtcctcc tggcatcgga aagactaagg ccgctgagca
1741 cctagccggc cgactagctg ctgaaatcag acctggaggt aaagttggcc ttgtaccccg
1801 ggagtccata gaccattggg atggatatca tggcgaggac gtcttgctct gggatgacta
1861 tggcatgtca aagataacag aggattgtaa taagttacag gctatagctg atactgcacc
1921 actgtcactt aattgtgaca gaatagaaaa caaaggcatg caattctctt ctgatgcaat
1981 aattataacc accaatgccc ctggcccagc cccagttgac tttgtcaact taggccccgt
2041 gtgcagacga gtggactttt tagtttactg ttctgcaccc gagattgaac aaatgcggag
2101 ggctcatcca ggtgacacca atgccatcaa ggatctgttt aaaaaggact tctcacactt
2161 gaaaatggaa ctggctccac agggcggctt tgataatcag ggcaacacac cttttgggaa
2221 gggtgtcatg aaaaccacaa ctctcaatag gctactgata caggccacag cattagccat
2281 ggagcgacaa gatgaattcc aactccaggg ggctgtctac aactttgacg aggatagagt
2341 ggccgccttc accaatctag ctcgagctaa tggcctgggg cttataagta tggcaacatt
2401 aggcaagaag ctgagaagtg ttaagtccat ggaaggcttg cgcaatgcac tactgggata
2461 caagattgga gagtgtgata taatctggaa caccagggtg tattcagtta agagtgacgg
2521 gagcaatgtc acaatcaaag aaaagcaggc accgtcctca ccccaacatc aagctatttc
2581 cacagccacc ctggcgctct ctagactgcg ggctgccaga gcccttgcgt acgcttcctg
2641 tttacaaagt gcagtgttgt caatacttca ggttgccggc tctgccttag tggtgagcag
2701 ggctgtaaaa cgcatgtttg gcacacgcac cgaacagccc attttggagg gtaagcataa
2761 agaacacaac tgcagggtac accgtgcaga ggccgccggt catggcccca ttggtcatga
2821 tggaatcatt gaacgttatg gtctgtgtga gagtgagcag gaaggagaag atgaccaaac
2881 tgtggagttg cccactgctg acaaagaagg caagaacaaa ggcaaaacca aaaagggccg
2941 cggacggaaa tccaacttca atgcattctc taggcgtgga cttagtgatg aggaatacga
3001 ggagtacaag aaagtaagag aagagaaggg tggcaactac agcatacaag agtaccttga
3061 ggaccgccag cgctatgaag aagaactcgc tgaggtgcaa gctggtggag atggtggaat
3121 cggcgaaact gaagctgaga tccgccaccg tgttttctat aaatcaaagt ctggcttgag
3181 aaaacagcgg caagaggaac gccgccagtt aggtctcgtg agcggtactg aaatccgcaa
3241 acgcaaaccc atagactgga ccccccccaa aaatgattgg tcagaggaca ctagaactgt
3301 taattatgat gaacacatca gctttgaagc ccccccttca atctggagta gagtagttaa
3361 atttggcagt ggctggggtt tttgggtgag ttcaacagtg ttcatcacca caacacatgt
3421 tataccacct ggtgctaaag agatctttgg tgagaacatt agcaatattg ccatccatag
3481 agttggcgaa ttcacccaat tccgtttctc caagaaaatg aggccagacc tttctggcat
3541 ggtcctggaa gagggatgcc ctgagggcac agtgtgcacc ataatgataa aaagagactc
3601 tggagagctg ttgccgctgg ctgttcgtat gggagcagtg gcctcaatga agatccaagg
3661 gaagcttatg catggacagt cagggatgtt gctcaccggt gctaacgcca agggcatgga
3721 ccttggtacc atacctgggg attgtggagc gccctatatc cacaagagag ggaatgactg
3781 ggtggtttgt ggggtgcatg cagcagccac gaaatcaggc aataccgtgg tgtgcgccat
3841 acaaggtggt gaaggtgaag ccacgctaga gggtggcgat caaaataagg gtcattatgc
3901 aggacaccca atactaagat atggtagtgg cccttcattg tcaactaaaa caaagttttg
3961 gaaatcaaac ccccaacctc taccccctgg tacatatgaa ccagcctacc tcggtggcag
4021 agaccccagg gttgaaggtg gtccatcttt gcagcaagta ttgcgagacc agctaaaacc
4081 atttgctgaa ccccgtggca ggttgcctga agcaggattg ctagaagccg cggttgaaac
4141 tgtcaccaat gcaattgaac aggtcatgga cacacctgtg gcatggagtt acggcgacgc
4201 ctgcatgtcc ttggacaaaa caaccagttc tggctaccct catcacaaaa gaaagaatga
4261 tgactggaac gggagttcat ttgtgagaga attgggagac caggcagcgc atgctaatag
4321 catgtatgag cttggtaaat ctatgaaacc agtgtacaca gcagcactca aggatgagct
4381 tgttaagcca gacaaggtgt acaataaaat taagaaaagg ctactctggg gggcggacct
4441 cggcaccgtc atacgtgctg ctagggcttt tgggccattt tgtgaagcaa taaagcccca
4501 tgtgattaag ttacccatta aagtgggcat gaatgccata gaagatggac ccttgattta
4561 tgcagaacac tccaaatata agtatcattt tgatgctgat tacacagcat gggactcaac
4621 acaaaatagg gagattatga tggagtcctt taacatcatg tgtaaactca ccgctaatcc
4681 ctccctggcc gcagtggtgg cacaggacct gctctctcct tctgaaatgg atgtcggtga
4741 ttatgtgatc agtgtcaaag atggcctacc atctggcttt ccatgcacct cacaagtgaa
4801 cagtatcaac cattggatct acactttgtg cgccttatca gaggttactg gtttggctcc
4861 tgacgtaata cagtcacagt cttacttttc attttatggt gatgatgaaa tagtttcaac
4921 agatattgaa tttgactcaa acagattaac acaggtgcta aaagagtatg gtttaaaacc
4981 cacaagacct gataaaactg atggtccgat cattgtaagg caacaggttg atggcttggt
5041 tttccttcgg cgcaccatct cgaaggatgc catcgggtac cagggtcggc ttgatcgcaa
5101 ttccattgaa agacagctct ggtggacccg agggcccaat catgatgatc catttgaaac
5161 cttggtccca cacacacaga ggaaggtcca attaatatcc ctattgggtg aggccgcact
5221 ccatggtgag aaattctata gaaagatagc cagtagggtg atccaggagg ttaaagaagg
5281 aggattggaa atttacatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
5341 tttgagtttg tggacaggag accgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
5461 caaatacagc tgagcctata tcaatggagc cagtggctgg ggcagcgaca gctgccgcaa
5521 ccgctggcca agttaatatg attgacccct ggattatgaa taattatgtg caagccccac
5581 aaggtgaatt caccatatca ccaaacaaca caccaggtga tattctattt gatttacaat
5641 taggccctca cctcaacccc tttttatccc atttggctca aatgtacaat ggatgggtag
5701 gtaacatgaa agtgaaagtt ctattggcag gtaatgcttt cacggcagga aaaattatta
5761 ttagttgtat accccctggt tttgtttcac agaatatatc tatagctcaa gctacaatgt
5821 tcccccacgt tatagctgat gtcagggtcc tggagcccat tgaggtccca ttggaggatg
5881 tgaggaatgt gttgttccac aataatgata acacaccaac catgagactg gtatgcatgc
5941 tctacacccc cttgcgtgcc agcggaagct catctgggac agaccccttt gtgattgctg
6001 ggcgtgtgtt gacttgccct agtcctgatt ttagcttcct attcttggtg ccccccaatg
6061 tagaacaaaa gactaaacct tttagtgtcc cagatctccc actcaatgtt ctatcaaatt
6121 caagggtgcc gtcactgata aaatttatga tggtgtcaca ggaccacgga cagatggtac
6181 aatttcagaa tggcagggtc acactggatg gacagctcca gggcaccaca ccaacatcgg
6241 ccagccagct ctgcaagatg cgggggacgg tttaccatgc ctccggtggt caagggctca
6301 atttaactga gattgatggc accccctatc atgcatttga aagtccagct cccattggtt
6361 tccctgacat aggagacagc gattggcaca tcaacgcttc acccgccacc gccttcggca
6421 gtggcgaaag cgtcaaaaga ctagatatgg aacagggctc ttcatttgcc ccacatttgg
6481 gtactgtaca ctatactaat gccagctatg aagccaatgc tgatctgatc tgctcattgg
6541 agtggctatc cccgcctagc ggaggcactc caaacaaagt caatccttgg gccattccac
6601 ggtatggttc aactttgact gaagctgctc agctagcccc accaatttac ccccctggct
6661 ttggagaagc tatagttttc tttatgtctg actttcctat agcaaatggt caagatgggt
6721 taagagtgcc ctgtactata ccccaagaat ttgtaaccca ttttgtcaat gaacaagcac
6781 caacccgtgg ggaagctgcc cttcttcatt atgttgatcc cgacacacac cgcaatttgg
6841 gtgagtttaa gctataccct gaaggattta tgacttgtgt accaaattcc agtggtagtg
6901 gtccccaaac gctgcctatc aatggagtct tcacttttgt ctcttgggtt tctcgtttct
6961 atcaactaaa gcctgtggga acgaccggac cggttcgtag gctaggaatc aggagatcat
7021 aatggcccag gcaatatttg gagcaatagc tgcgacggct gctggcagcg ctgtgggtgc
7081 aggcattcag gctggtactg aggccgcact ccaacatcag cggttccagc aggatttaac
7141 gttgcagagc aacactttca aacatgacaa agaaatgcta gggctacagg ttggtgcttc
7201 cactgctctc ttgcaaaaca gcctcaacac ccgctacaac atgctcacaa atgctggtct
7261 ctcgtcctca gatgcagcac gcgtggtggt tggcgcgcca gccacacgtg ttgttgactg
7321 gaacggtact agggtgtcag caccacaatc tacagctacc acgttgaggt ctggtgggtt
7381 catgacaatc ccaactctgt acaagggcaa acaacagcaa aaagctccaa ctgaaattgg
7441 cttgtctaac ccaaattatg gttcatctgt gtcttctagg gttgctgatt gggtttcctc
7501 tcaaaattct tctcgctcat ccttgggccc gtatcacccc agtgctttgc agacaacatg
7561 ggtgacccca cccggttcta gttctacttc tactatttct tctgtgtcta ctgcacctag
7621 atatttcaat actgataggt tgcctctatt cgcaaatatg aggaaataat ttttgtaata
7681 tgaaatatgg g
//