Typing tool
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Typing tool
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Complete norovirus genomes
| MH997861 | GII.17 | |
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| GII.P17 |
ORF1: 1..5095
ORF2: 5076..6698
ORF3: 6698..7477
LOCUS MH997861 7551 bp RNA linear VRL 17-OCT-2018
DEFINITION Norovirus GII nonstructural polyprotein (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MH997861
VERSION MH997861.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7551)
AUTHORS Santiso-Bellon,C., da Silva Ribeiro de Andrade,J.,
Fuentes-Trillo,A., Monzo,C., Vila-Vicent,S., Gozalbo Rovira,R.,
Buesa,J., Chaves,F.J., Pereira Miagostovich,M. and
Rodriguez-Diaz,J.
TITLE Complete Genome Sequence of Human Norovirus GIIP.17-GII.17 from
Brazil, 2015
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7551)
AUTHORS Santiso-Bellon,C., da Silva Ribeiro de Andrade,J.,
Fuentes-Trillo,A., Monzo,C., Vila-Vicent,S., Gozalbo Rovira,R.,
Buesa,J., Chaves,F.J., Pereira Miagostovich,M. and
Rodriguez-Diaz,J.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2018) Lab. Virologia Comparada e Ambiental,
Fiocruz-IOC, Av. Brasil, 4365, Rio de Janeiro, Rio de Janeiro
21040-360, Brazil
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v3.11.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7551
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P17_GII.17/24785-SC-LVCA/2016/BRA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Brazil"
/collection_date="Jul-2015"
/note="genotype: GIIP.17/GII.17"
gene <1..5095
/gene="ORF1"
CDS <1..5095
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AYF59857.1"
/translation="NDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPP
PGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQ
NTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLA
KIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLR
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAK
KVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAK
RDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGMVKSLTIGSLIARASG
LLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDE
LKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNTTVQTNNELVGALHHLRSA
RIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPK
PRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSL
FITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTV
VSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYMYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
NAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSG
ESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNH
EDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..985
/gene="ORF1"
/product="p48"
mat_peptide 986..2083
/gene="ORF1"
/product="NTPase"
mat_peptide 2084..2620
/gene="ORF1"
/product="p22"
mat_peptide 2621..3019
/gene="ORF1"
/product="VPg"
mat_peptide 3020..3562
/gene="ORF1"
/product="Pro"
mat_peptide 3563..5092
/gene="ORF1"
/product="RdRp"
gene 5076..6698
/gene="ORF2"
CDS 5076..6698
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AYF59855.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSINLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6698..7477
/gene="ORF3"
CDS 6698..7477
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AYF59856.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 taacgacgct tccgctgccg ttgctggcaa aaacaacaac aacgacaagg aaaaatcttc
61 aagtgacagc ttgtttgcta acatgtctgt cacttttaag aaagccctcg gggcgcggtc
121 taaacaaccg cccccgggag aaacaaaaca aatacaaaaa ccaccaaggc caccgacacc
181 ggaattggtg aagagaatac ctccaccccc acccaatggc gaggatgaac cagggatagt
241 gtacaaggtg ggagagggtg tgtctgggtt gcccgaccta acaactgtgg tacaacctga
301 cgcacaaaac acagcttata gtgttccccc acttagccag agagaagtcg gcgaagctaa
361 agaaccgctg cctggctcca ttctggaaat gtgggatggt gagatctacc actatgggct
421 gtatgttgag cgggggcatg tgctcggagt acacaaacca cctgctgcaa taagccttgc
481 caaaattgaa ataacaccgc tgtctctcta ctggagagtg gtctacactc cccagtattt
541 gatagatcca ggaactctta agaacttgag tggagagact ttcccataca cggcctttga
601 caacaactgt tatgccttct gttgttgggt cctagacctc aacgactcct ggcttagcag
661 gagaatgatc caaagaacaa ctggattctt caaaccttat caggattgga acagaaaacc
721 cttaccaacc atggacgaac cgaaaatcaa gaaggccgcg aatgctgtcc tatgtgctct
781 ctcctcactc ttcactagac ccattaagga catcattgga aagcttagac cactgaacat
841 tcttaacata ctggcaacct gcgattggac ttttgcaggc atagtggaat ccttgatcct
901 tcttgctgaa ctctttgggg tgttctggac acccccagat gtgtctgcga tgattgctcc
961 cttactcggt gactacgaga tgcaaggccc cgaagacctg gccgtggaac ttgtgcccgt
1021 ggtgatggga ggaataggtt tggtgttagg attcaccaaa gaaaagatcg gcaagatgct
1081 ttcatcagct gcgaccacac ttagggcctg caaggatcta ggatcttatg gattggagat
1141 actcaaattg gtcatgaagt ggttcttccc caagaaggag gaggctaacg aactagccat
1201 ggtgagggcc attgaggatg cagtcctgga tttggaggca atagaaaaca atcacatgac
1261 cacccttctc aaggataaag acagcctggc cacatacatg aggactcttg acttggaaga
1321 agagaaagca aggaaactgt caaccaaatc ggcgtcacct gacatcgtgg gtacaataaa
1381 cgcattattg gctaggatag cagccgccag gtcactggtc cacaaggcta aggaggagct
1441 ctcgagcaga cagagacctg ttgttgtaat gatatcaggt agaccaggta taggaaagac
1501 ccatctggcc agagagttag ccaagaaagt tgcgtcaaca ctgtcaggcg accaaaggat
1561 tggactggta cctagaaatg gcgtcgacca ttgggacgcc tacaagggag aaagggtggt
1621 tctgtgggat gattatggta tgagcaaccc tatacaggac gcactgaggc tccaagaatt
1681 ggctgacacc tgtcctctga ccctaaattg tgataggatt gaaaacaaag gaaaagtgtt
1741 cgacagcgat gccataatta taacaaccaa ccttgcaaac ccagcaccac tagactatgt
1801 caactttgag gcctgctcta gacgcataga cttcttggtg tatgcagacg cacctgacat
1861 tgagaaggct aagcgtgact tccctggcca accagatatg tggaaagacc atttcagacc
1921 agacttctca cacattaaac ttcagctggc accacaggga ggttttgaca aaaatggcaa
1981 caccccacat ggcaaaggta tggtgaagtc cctgacgatt ggttctctga tcgccagggc
2041 ctccggcttg ctccacgaga gaatggatga attcgagctc caaggctctg acctgccaac
2101 cttcaatttt gaccgcaaca aagtcgccgc cttcagacaa ttggcagctg aaaacaaata
2161 tggtcttatg gacacactga gggtcggcaa ccaactgaaa agtgttaaga ccctggatga
2221 gctgaagcag gccataaaga acatcagtat caagaagtgt cagatagtgt ataatggatg
2281 cacctatacc atggaatctg atgggagggg caaggttgtg gttgaaaagg tacaaaacac
2341 aacagttcaa accaacaatg aacttgtagg ggcgctccac cacctgagat ctgcaaggat
2401 aagatactat gttaaatgtt tccaagaagc catttactct ctactccaaa ttgctggtgc
2461 agccttcgtc acctcacgca tcgtgaggcg catgaacata tcaaacctct ggtcgaagcc
2521 acccatcgag gagggtgatg agcctgaaga cagaggagga tgccccaagc ccagggatga
2581 agatgacctc actattgact ctagagacat taaagtggaa gggaagaagg gcaagaacaa
2641 gtctggccgg ggcaagaaac acacagcttt ctcttccaag ggcctcagtg atgaagagta
2701 cgatgagtac aagagaatca gagaggaaag gaatggtaaa tactcaatag aggaatacct
2761 ccaagatagg gacagatact atgaagagct tgccattgct aaggccactg aggaggactt
2821 ctgtgaggag gaggagatca aaatccgcca gagaatcttc cgacccacca ggaagcagcg
2881 gaaagaggaa agggccacgc ttgggcttgt cacaggatcg gaaatcagaa agaggaatcc
2941 agatgacttt aaaccaaaag gaaaattatg ggctgatgac aacaggagcg tggattacaa
3001 tgagaggata gattttgagg ctcccccgag tgtttggtct aggatagtca actttggcac
3061 aggctgggga ttctgggttt ctccaagtct ctttataact tcaacacacg tcataccaaa
3121 aggaatcact gaggcctttg gagtgcccat aaaccaaatc caaattcaca aatctggaga
3181 attttgccgc ttgcggtttc caaagccaat tagaccagac gtgagtggga tgatcttgga
3241 agagggcgct cctgaaggca ctgttgtgtc tattctcatc aaaaggacaa caggggagct
3301 gatgcctctt gcagtcagaa tggggactca tgccacaatg aaaatccaag gtagaacggt
3361 gggtggtcag atgggtatgc ttctcactgg ctcaaatgct aaaagcatgg atctaggcac
3421 aacgccaggt gactgcggat gtccatacat gtacaaaagg ggcaatgacc ttgtggtcat
3481 tggggtgcac actgcagcag cccgtggagg caacacggtc atatgtgcca cacagggaag
3541 tgaaggtgaa gccactcttg aaggaggtga caacaagggt acctattgtg gagcccccat
3601 tttgggacct ggcaatgcac caaaattgag cacaaagaca aaattctgga gatcctctaa
3661 cgcaccgctt cccccaggta cttatgaacc agcatacctt ggtgggagag acccgcgtgt
3721 gaagggaggc ccatctctgc aacaagttat gagagaccaa cttaagcctt ttacagagcc
3781 cagagggaag ccaccaaacc caaacgtctt agagtcagca aagaagacta tcatcaatgt
3841 tctggaacaa accattgacc cccctcaaaa gtggtcatat gcccaagctt gtgcatccct
3901 cgacaagaca acctccagtg gatacccgca ccacgtccgg aagaatgact attggagtgg
3961 tgaatccttc acaggaaaac ttgcagatca ggcttcaaaa gcaaatctca tgtatgagga
4021 aggcaagcac atgcaaccag tttacaccgc agcactcaaa gacgagctcg tgaaaactga
4081 caaaatttat ggcaaaatca agaaaagact cctgtggggt tctgacctct ccacaatgat
4141 tcgatgcgcc agagcatttg gtggtctcat ggatgaattc aaagcaaatt gtattacact
4201 ccctatcaga gttggtatga atatgaatga agatggtccc ataatatttg agaaacactc
4261 caggtacagg taccactatg atgctgatta ctcccgctgg gactccacac aacagcgggc
4321 agtgctggaa gcggcacttg aaatcatggt gagattttct gctgagccac agctggcaca
4381 aatagtggca gaggacctgc tgtcaccaag tgtggttgat gtgggcgatt tcaaaatcgc
4441 tatcaatgaa ggcctaccat ctggcgtgcc ttgcacctca caatggaatt ctattgccca
4501 ctggttactt accttgtgtg ccctttctga agtgacagga ttaggtcctg acatcataca
4561 agctaactcc atgtactctt tctatggtga tgatgagatt gtgagcacag acataaaatt
4621 ggacccagag aaattgaccg caaagctcaa agaatatggc cttaaaccta ctcggcccga
4681 caaaactgag gggccgttgg tgattagtga ggacctgaat gggttgactt tcctccgccg
4741 aacagtcacc cgtgatccag caggttggtt tggaaagttg gaccaaaact ccatcctcag
4801 gcagttgtac tggacaagag gacccaacca tgaagacccc agtgagacca tgataccaca
4861 cgcacaaaga cctgtgcagc tcatggcact actaggagaa tcctccctac atggaccctc
4921 attttacagc aaggttagca aattagtcat atctgaactt aaagagggag gaatggattt
4981 ttatgtgccc agacaagagt caatgttcag atggatgagg ttctcagatc taagcacatg
5041 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg
5101 ctccatctaa tgatggtgct gctggtctcg taccagaggg caacaacgag acccttcccc
5161 tagaaccagt tgcgggcgca gctatagccg cacccgtcac tggccaaaat aacataattg
5221 acccctggat tagaacaaat tttgtgcaag caccaaacgg agagttcaca gtgtcaccca
5281 gaaactctcc tggagaaatt ttattaaact tagagttggg ccctgatttg aacccttatt
5341 tggctcattt gtcaaggatg tacaatgggt atgctggtgg agtggaagtt caggttctcc
5401 tggcagggaa cgcgttcact gccggaaaga tcctcttcgc cgccgtcccg ccaaatttcc
5461 cagtggaatt cttaagccca gcccagatca caatgctccc acatttaata gtagatgtta
5521 ggactcttga accaattatg atcccactcc ctgatgttag gaatacattc ttccattata
5581 gtaaccagcc taacagccgc atgagattag tggctatgct ctatacccca ctcagatcta
5641 atggctcagg tgatgatgtc tttactgttt cttgcagggt tttgactagg cctactcctg
5701 attttgagtt cacttattta gtgccacctt ctgttgaatc taaaactaag cctttttcct
5761 tacctatttt aaccctttct gagctcacaa attcgaggtt cccagtcccc atcgattcgc
5821 ttttcaccgc ccagaataat gtgttgcagg tgcagtgtca aaatggcagg tgtacacttg
5881 atggtgagtt acaaggcaca acccagttgc tcccatctgg catctgtgca ttcagaggac
5941 gggtgacagc acaaattaac caacgtgaca ggtggcacat gcaactgcaa aacctcaatg
6001 gtacaacata tgacccaact gatgatgtgc cagccccgct gggtacacct gacttcaagg
6061 gcgtcgtgtt tgggatggta agccaaagaa atgtgggtaa tgatgcgcct ggctcaacca
6121 gagcccaaca ggcgtgggtt tcaacctata gcccccaatt tgtccccaaa ttaggttcta
6181 tcaatcttag aattagtgat aatgatgatt tccaattcca gcctacaaaa ttcacaccag
6241 tgggcgtcaa tgatgacgat gatggccacc cgttcagaca atgggaacta ccaaactatt
6301 caggagagct taccttgaat atgaatcttg cccccccagt tgctccaaat tttcctggtg
6361 aacaattgtt attcttcaga tctttcgtgc catgctcagg aggttacaac caaggtatta
6421 tagattgtct tattccccaa gaatggatcc aacacttcta tcaggaatca gcaccctccc
6481 agtcagatgt ggccctaatc aggtatgtca accccgatac gggacgtaca ctgtttgaag
6541 caaaattgca tagatctggt tacattactg tggctcactc tggagactat cctcttgttg
6601 ttccggctaa tggacacttt agatttgatt cttgggtaaa tcagttttac tcactcgccc
6661 caatgggaac tgggaatggg cgaaggaggg ctcagtaatg gctggggctt tcattgcagg
6721 attggcaggc gacatgctca cgtcatctgt gggctccctt gtgaacgcag gggcaaacgc
6781 catcaaccaa aagatagact ttgaaaacaa caaacaactc cagtctgctt cctttcagca
6841 tgataaagag atgctccaag cgcaggtgag ggcaaccaag cagctgcaat ctgaaatgat
6901 agccctaaaa cagggggttt tggccgcagg cggcttttcc cccactgatg cagcaagggg
6961 atccattggt gcacccatga caaaggtgct tgactggtct ggcactcgat actgggcgcc
7021 caattccaca aagacaactg gctattcggg acaattcacc tcttcacctg tgcatatgtc
7081 tagcccaaat gctccacaat caaaacctgc aaagcctagg tctctagctc cttcctcttc
7141 ttctagcagt gtctatagta tgtacactca atctactcat ttaacatctg gctcttctag
7201 taatgcttct tctgcctcca caaaattgac aaatttaagc tctggctcct ctcaaaacag
7261 aacagcagag tgggtaaatc aacagagaag tcttagccct ttcatgagtg gcgcacttaa
7321 catctcacat gtcacgccac cctcaagtag ggcttccagt tctgggacgg tctcgaccgt
7381 gcccaaggaa gttttggact cctggacgtc tgcgtttaac acacacagac agccgctctt
7441 cgcacacctc agagtgaggg gggagtcacg tgtttagtga aaagaaataa ttggctataa
7501 tgtgatttct ttctaaattt ggctaatttg tatcttttaa aaaaaaaaaa a
//