Typing tool
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Typing tool
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Complete norovirus genomes
| MH979230 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 5..5107
ORF2: 5088..6710
ORF3: 6710..7516
LOCUS MH979230 7516 bp RNA linear VRL 27-NOV-2018
DEFINITION Norovirus GII isolate Hu/GIIPe-GII.4 sydney/CGMH1411/2018/TW,
complete genome.
ACCESSION MH979230
VERSION MH979230.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7516)
AUTHORS Lee,C.C., Chen,S.Y., Tsai,C.N. and Chiu,C.H.
TITLE Virological and Clinical Characteristics of Viral Shedding in
Children with Norovirus Gastroenteritis
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7516)
AUTHORS Lee,C.C., Chen,S.Y., Tsai,C.N. and Chiu,C.H.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2018) Graduate Institute of Clinical Medical
Science, College of Medicine, Chang Gung University, 259, Wen-Hwa
1st Road, Kwei-Shan, Taoyuan County 333, Taiwan
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7516
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GIIPe-GII.4 sydney/CGMH1411/2018/TW"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Taiwan"
/collection_date="20-Feb-2018"
/note="genotype: GIIPe-GII.4 sydney"
gene 5..5107
/gene="ORF1"
CDS 5..5107
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AYI50407.1"
/translation="MKMASNDASAAAVANSNNDIAKSSSDDVFSNMAVTFKRALGVRP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE
ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVFAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM
SDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKGGC
LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQTQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACTSLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSPVG
LNTTKGCASSSTRNHGLSSLQNHTWAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG
PNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQ
EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5104
/gene="ORF1"
/product="RdRp"
gene 5088..6710
/gene="ORF2"
CDS 5088..6710
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="AYI50408.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTPGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFESKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6710..7516
/gene="ORF3"
CDS 6710..7516
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="AYI50409.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acgatgtgtt ttctaacatg gctgtcactt ttaagcgggc
121 cctcggggtg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccgcgacc
181 acccacacca gaactggtca aaaagatccc tcctccccca cccaacgggg aagatgaact
241 agtggtttct tacagcgcca aagatggcgt ttccggactg cctgagctca ccactgtcag
301 acaaccggaa gaaaccaaca cggcgttcag tgtcccccca ctcaaccaaa gggagagcag
361 ggacgccaag gagccactaa ccggaacaat cattgaaatg tgggatggag aaatctacca
421 ttacggcctg tacgtggaac gaggtcttat acttggtgtg cacaagccac cagcagccat
481 tagcctcgcc aaggtcgagc tggcaccgct ctctttgttc tggagacctg tgtacacccc
541 ccagtacctt atctctccag acactcttag gagattacat ggagagtcat tcccctacac
601 tgcatttgac aacaattgct acgccttttg ttgttgggta ttagacctaa acgactcatg
661 gctaagcagg agaatgattc agagaacaac aggcttcttc aggccgtacc aggattggaa
721 caggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcca acatattctt
781 gtgcactttg tcttcactat tcaccagacc cattaaggac ataataggga agttgaaacc
841 tctcaacatc cttaatattc tggctacatg tgattggacc ttcgcaggca tagtggaatc
901 cttaatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttgctaggtg attatgaact gcaaggaccc gaggaccttg cagtggaact
1021 ggtcccaata gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaatcgg
1081 aaagatgctg tcatccgctg catccacttt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtactagac ctcgaggcaa ttgaaaacaa
1261 ccacatgacc accctgctca aagacaaaga cagcttgaca acctacatga ggacccttga
1321 ccttgaggag gagaaagcca gaaaactttc aaccaaatct gcctcacccg atattgtggg
1381 cacaatcaac tctcttctgg caagaatcgc tgctgcacgc tccctagtgc accgggcgaa
1441 agaagagctc tccagcaggc cgagacctgt cgttgtaatg atatcgggaa gaccagggat
1501 aggaaaaact caccttgcca gggagctggc caagaagatc gcggcctccc tcacagggga
1561 ccagcgtgtg ggccttatcc cacgcaatgg tgtcgaccac tgggacgcat acaagggcga
1621 aagagttgtc ctatgggacg actatgggat gagcaacccc atccatgatg ccctcaggtt
1681 acaggagctt gctgacactt gccccctcac gctaaattgt gacagaattg agaacaaagg
1741 aaaagtcttc gacagtgatg ccataattat caccaccaac ctggccaacc cagcaccact
1801 ggattatgtc aactttgaag cgtgctcgag acgcattgac ttcctcgtgt tcgccgaagc
1861 ccctgaggtg gagaaggcaa agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcac acataaaact gtcattggct ccacagggtg gttttgacaa
1981 gaacggcaac accccgcatg gaaaaggggt catgaagacc ctcaccactg gctccctcat
2041 cgcccgagca tcagggttac tccatgagag gctagatgaa tatgaattgc aaggcccagc
2101 cctcaccact ttcaactttg accgcaacaa gatacttgct tttagacagc ttgctgctga
2161 aaacaagtat gggctgatgg acacaatgag agttggaaaa cagctcaagg atgtcaagac
2221 tatgtcagac ctcaaacaag cactcaagaa catcgcgatc aagaagtgcc agatagtgta
2281 caatggtggc acctacacac ttgaggctga tggtaagggc agtgtgaaag ttgacaaagt
2341 gcaaagtgcc actgtgcaga ccaacaatga attggccggt gccctacacc atctaaggtg
2401 cgctagaatc aggtactatg ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat
2461 cgctggggcc gcattcgtca ccacgcgcat cgctaagcgc atgaatatac agaatctctg
2521 gtccaagcca caggtggaag acacagaaga gatggccaac aaaggtggtt gcctaaaacc
2581 caaagatgat gaagagtttg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaagaacaag tccggccgtg gcaagaagca cacagccttt tcaagtaaag ggctcagtga
2701 tgaggagtac gatgagtaca agagaatcag agaagaaagg aatggtaagt actccataga
2761 agagtacctt caggacagag acaggtacta cgaggaggtg gccattgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa aatccggcag aggattttca gaccaacaag
2881 gaaacaacgc aaagaagaga ggacctctct cggcttggtt acaggctctg aaatcaggaa
2941 gagaaaccca gaagacttca aacccaaggg aaagctgtgg gctgatgatg acagaagtgt
3001 tgactacaat gagaaactca actttgaggc cccaccaagc atctggtcgc ggatagtcaa
3061 ctttggttca ggctggggct tctgggtctc ccccagtctg tttataacat caacccatgt
3121 cataccccaa ggtgcaaaag agttcttcgg agtccctatc aagcaaaccc agatacacaa
3181 gtcaggtgaa ttctgccgat tgagattccc aaagccaatc agaaccgatg tgacgggcat
3241 gattctagaa gaaggtgcac ccgaggggac cgtggccaca ctgctcatca agagaccaac
3301 tggagagctc atgcctctgg cagccagaat ggggacccat gcaaccatga aaattcaggg
3361 gcgcacagtt ggagggcaaa tgggtatgct cctgacagga tccaacgcca agagtatgga
3421 cctaggcaca acaccaggcg actgcggctg cccctacatc tacaagaggg ggaatgacta
3481 cgtggtcata ggggtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ccacacttga aggaggtgac agtaaaggga catactgtgg
3601 cgcgccaatc ttgggcccag ggagcgctcc gaagctcagc accaagacta agttttggag
3661 atcatccaca acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga
3721 ccctagagtc aaaggtggcc cttcattgca acaagttatg agggaccagc tgaagccatt
3781 cacagaaccc agaggcaaac caccaagacc aaatgtgttg gaagctgcca agaaaaccat
3841 catcaatgtc cttgagcaaa caattgatcc accccaaaaa tggtcatttg cgcaagcttg
3901 cacgtccctt gacaaaacca cctccagcgg ccacccgcac cacatgagga aaaacgactg
3961 ttggaatggg gagtccttca caggaaaatt ggctgaccaa gcctccaagg ccaacctaat
4021 gtttgaagag ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgagttggt
4081 aaagaccgat aaagtttatg gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc
4141 gaccatgata cggtgcgccc gagcttttgg aggcctcatg gatgaactca aagcacactg
4201 tgtcacactc cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatcttcga
4261 gaagcactcc agatatagat atcactatga tgctgactat tccccggtgg gactcaacac
4321 aacaaaggga tgtgctagca gcagcactag aaatcatggt ttaagttctc tccagaacca
4381 cacctgggcc cagatagttg cagaagacct cctctcccct agcgtgatgg atgtgggtga
4441 ctttcaaata tcaataagtg agggcctccc ctctggggtg ccttgtacct cccagtggaa
4501 ttccatcgcc cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc
4561 tgatatcatt caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac
4621 agacataaag ttggacccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc
4681 aacccgcccc gacaaaactg aaggacccct tgttatctct gaagacctgg atggtttgac
4741 attcctccgg agaactgtga cccgtgatcc agctggctgg tttggaaaac tggaacaaag
4801 ttcaattctt aggcaaatgt actggaccag gggtcccaac catgaagatc catttgaaac
4861 aatgatacca cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact
4921 ccacggcccg gcattctaca gcaaaattag caaattagtc attgcagagt tgaaggaagg
4981 tggcatggat ttttacgtac ccagacaaga gccaatgttc agatggatga gattctcaga
5041 tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5101 cgagtgacgc caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg
5161 aggttatggc tctggagccc gttgttggtg ccgccattgc ggcacctgta gcgggccaac
5221 aaaatgtaat tgacccctgg attagaaaca attttgtaca agcccctggt ggagagttta
5281 cagtgtcccc tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccctgatc
5341 taaatcccta cttatctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag
5401 tgcaggtaat tctcgcgggg aacgcgttca cgcccgggaa ggttatattt gcagcagtcc
5461 caccaaattt tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag
5521 tagtagatgt taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt
5581 tctaccatta caatcaatca aatgacccca ccattaagtt gatagcaatg ttgtatacac
5641 cacttagggc taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga
5701 gaccgtcccc cgattttgac ttcatatttc tagtgccacc cacagttgag tcaagaacta
5761 aaccattctc tgtcccagtt ttaactgttg aggagatgac caattcaaga ttccctattc
5821 ctttggaaaa gttgttcacg ggtcccagca gtgcctttgt tgttcaacca caaaacggta
5881 ggtgcacgac tgatggcgtg ctcctaggca ccacccaact gtctcctgta aacatctgca
5941 ccttcagagg agatgtcacc catatcacag gtagtcataa ctacacaatg aatttggctt
6001 ctcaaaattg gagcaattac gacccaacag aagaaattcc agcccctcta gggactccag
6061 actttgtggg gaagattcaa ggcatgctta cccaaaccac aaggacagat ggctcaacac
6121 gcggccacaa agccacagtg tacactggga gcgccgactt tgctccaaaa ctgggtagag
6181 ttcaatttga aactgacaca aacaatgatt ttgaagctaa ccaaaacaca aagttcaccc
6241 cagttggtgt catccaagat ggtggcacca cccaccgaaa tgaaccccaa cagtgggtgc
6301 tcccaagtta ctcaggcagg aacaccccta atgtgcatct ggcccccgct gtagccccca
6361 cttttccggg tgagcaactc ctcttcttca gatccaccat gcccggatgc agcgggtacc
6421 ccaacatgga tttggattgt ctgctccccc aggaatgggt gcagtacttc taccaagagg
6481 cagccccagc acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg
6541 ttttgtttga aagtaagctt cataaatcag gctatgttac agtggctcac actggccaac
6601 atgatttggt tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt
6661 acacgcttgc ccccatggga aatggagcgg ggcgtagacg tgcactataa tggctggagc
6721 tttctttgct ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc
6781 tggggctggg gccatcaacc aaaaagttga atttgaaaat aacagaaaat tgcaacaagc
6841 atccttccaa tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct
6901 ccaagcacaa attgaggcta ccaaaaggtt acaacaggaa atgatgaaag ttaagcaggc
6961 aatgctccta gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc
7021 tatgacaaaa gctttggact ggagcgggac aaggtactgg gctcctgatg ctaggactac
7081 aacatacaat gcaggccgct tttccacccc ccaaccatcg ggggcgctgc caggaagagc
7141 taatcttagg gatgctgtcc ctgctcgggg ttcctctagt aagtcttcta attcttctac
7201 tgctacttct gtgtactcaa atcaaactat ttcaacgaga cttggttcta cagctggttc
7261 tggtaccagt gtctcgagct tcccgtcaac tgcaaggact aggagctggg ttgaggatca
7321 aagtaggagt ttgtcacctt tcatgagggg ggcccacaac atatcgttcg tcaccccacc
7381 atctagcaga tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc
7441 ctggactggc gctttcaaca cgcgcaggca gccactcttc gctcacattc gtaagcgagg
7501 ggagtcacgg gtgtaa
//