Typing tool
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Typing tool
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Complete norovirus genomes
| MH922876 | GII.4 | |
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| GII.P16 |
ORF1: 1..265
ORF2: 246..1868
ORF3: 1868..2166
LOCUS MH922876 2166 bp RNA linear VRL 14-OCT-2018
DEFINITION Norovirus GII isolate Hu/GII.P16_GII.4/AlbertaEI231/CA/2018
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION MH922876
VERSION MH922876.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2166)
AUTHORS Hasing,M.E., Lee,B.E., Qiu,Y., Xia,M., Pabbaraju,K., Wong,A.,
Tipples,G., Jiang,X. and Pang,X.L.
TITLE Changes in norovirus genotype diversity in gastroenteritis
outbreaks in Alberta, Canada: 2012 - 2018
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2166)
AUTHORS Pabbaraju,K., Wong,A. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (18-SEP-2018) Laboratory Medicine and Pathology,
University of Alberta, 8440-112 Street, Room WMC 2B2.08, Edmonton,
Alberta T6G 2J2, Canada
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2166
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16_GII.4/AlbertaEI231/CA/2018"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada"
/collection_date="Feb-2018"
/note="genotype: GII.P16_GII.4 Sydney"
gene <1..265
/gene="ORF1"
CDS <1..265
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AYG85352.1"
/translation="EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..262
/gene="ORF1"
/product="RdRp"
gene 246..1868
/gene="ORF2"
CDS 246..1868
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AYG85353.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRSTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 1868..>2166
/gene="ORF3"
CDS 1868..>2166
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AYG85354.1"
/translation="MAGALFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGA"
ORIGIN
1 cgaagacccc aatgagacga tgatacccca ttctcaaaga cccatacagc tcatggcact
61 gcttggtgaa gcctctcttc acggaccctc tttttacagc aaaatcagca aattggtcat
121 aactgagctc aaagaaggtg ggatggactt ttacgtgcca aggcaggaac ccatgtttag
181 gtggatgagg ttttctgact tgagcacgtg ggagggcgat cgcaatctgg ctcccaattt
241 tgtgaatgaa gatggcgtcg agtgacgcca acccatctga tgggtccgca gccaacctcg
301 taccagaggt caacaatgag gttatggctc tggagcccgt tgttggtgcc gctatcgcgg
361 cacctgtagc gggccaacaa aatgtaattg acccctggat tagaagtaat tttgtacaag
421 cccctggtgg agagtttaca gtgtccccta gaaacgctcc aggtgaaata ctatggagcg
481 cgcccctagg ccctgaccta aatccctacc tatcccattt ggccagaatg tacaatggtt
541 atgcaggtgg ttttgaagtg caggtaatcc tcgcggggaa cgcgttcacc gccgggaaga
601 tcatatttgc agcagtccca ccaaattttc caactgaagg cttaagtcct agccaggtca
661 ctatgttccc ccatataata gtagatgtta gacaattaga acctgtgctg attcccttac
721 ccgatgttag gaataatttc tatcactata atcaatcaaa tgactccact attaagttga
781 tagcaatgtt gtatacacca cttagggcta acaatgctgg ggacgatgtc ttcacagttt
841 cgtgccgagt tctcacgaga ccatcccccg actttgattt catattctta gtgccaccca
901 cagttgagtc aagaactaaa ccattctctg tcccagtctt aactgttgag gagatgacca
961 attcaagatt tcccattcct ttggaaaagt tgttcacggg ccccagcagt gcctttgttg
1021 tccaaccaca aaacggcagg tgcacaactg atggcgtgct tctaggcacc acacaactgt
1081 ctcctgtcaa catctgcacc ttcagagggg atgtcaccca catcacaggt agtcacaact
1141 acacgatgaa tttggcttcc caaaattgga acaattatga cccaacagaa gaaatcccag
1201 cccctctagg aactccagat tttgtgggga agattcaagg catgctcacc caaactacaa
1261 ggacagatgg ttcaacgcgc ggccacaaag ctacagtgta cactgggagc gccgactttg
1321 ctccaaaact gggtagagtt caatttgaaa ctgacacaaa ccatgatttt gaagccaacc
1381 aaaacacaaa gttcacccca gtcggtgtca tccaagatgg tagcaccacc caccgaaatg
1441 aaccccaaca gtgggtgctc ccaagttact caggcagaag cactcacaat gtacatctgg
1501 cccccgctgt agctcccacc tttccgggtg aacaacttct cttctttaga tccaccatgc
1561 ccggatgcag cgggtacccc aacatggatt tggactgtct gctcccccag gaatgggtgc
1621 agtacttcta ccaagaggca gccccagcac aatctgatgt ggctctgcta agatttgtga
1681 atccagacac aggtagagtt ttgtttgaat gtaagcttca caaatcaggc tatgttacag
1741 tggctcacac tggccaacat gatttggtta tcccccccaa tggttacttt agatttgatt
1801 cctgggtcaa ccagttctac acacttgccc ccatgggaaa tggaacgggg cgtagacgtg
1861 tagtataatg gctggagctc tctttgctgg attggcatct gatgtcctcg gctctggact
1921 tggttccctt atcaatgctg gggctggggc tatcaatcaa aaagttgagt ttgaaaacaa
1981 cagaaaattg caacaagcat ccttccaatt tagcagcaac ctgcaacagg cttcctttca
2041 acatgacaaa gagatgctcc aagcacaaat tgaggccacc aaaaagttac aacaggaaat
2101 gatgagggtt aagcaggcaa tgctcctaga gggtgggttc tctgagacag atgcagcccg
2161 cggggc
//