Typing tool
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Typing tool
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Complete norovirus genomes
| MH922875 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..265
ORF2: 246..1868
ORF3: 1868..2166
LOCUS MH922875 2166 bp RNA linear VRL 14-OCT-2018
DEFINITION Norovirus GII isolate Hu/GII.P16_GII.4/AlbertaEI487/CA/2017
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION MH922875
VERSION MH922875.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2166)
AUTHORS Hasing,M.E., Lee,B.E., Qiu,Y., Xia,M., Pabbaraju,K., Wong,A.,
Tipples,G., Jiang,X. and Pang,X.L.
TITLE Changes in norovirus genotype diversity in gastroenteritis
outbreaks in Alberta, Canada: 2012 - 2018
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2166)
AUTHORS Pabbaraju,K., Wong,A. and Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (18-SEP-2018) Laboratory Medicine and Pathology,
University of Alberta, 8440-112 Street, Room WMC 2B2.08, Edmonton,
Alberta T6G 2J2, Canada
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2166
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16_GII.4/AlbertaEI487/CA/2017"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada"
/collection_date="Nov-2017"
/note="genotype: GII.P16_GII.4 Sydney"
gene <1..265
/gene="ORF1"
CDS <1..265
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AYG85349.1"
/translation="EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..262
/gene="ORF1"
/product="RdRp"
gene 246..1868
/gene="ORF2"
CDS 246..1868
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AYG85350.1"
/translation="MKMASSDANPSDGSAANLVPEVSNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 1868..>2166
/gene="ORF3"
CDS 1868..>2166
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AYG85351.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGA"
ORIGIN
1 tgaagacccc aatgagacaa tgatacccca ttctcaaaga cccatacagc tcatggcact
61 gcttggtgaa gcctctcttc acggaccctc tttctatagt agaatcagta aattggtcat
121 aactgaactc aaagaaggtg ggatggactt ttacgtgcca aggcaggaac ccatgttcag
181 gtggatgagg ttttctgact tgagcacgtg ggagggcgat cgcaatctgg ctcccaattt
241 tgtgaatgaa gatggcgtcg agtgacgcca acccatctga tgggtccgca gccaacctcg
301 taccagaggt cagcaatgag gttatggctt tggagcccgt tgttggtgcc gctattgcgg
361 cacctgtagc gggccaacaa aatgtaattg acccctggat tagaaataat tttgtacaag
421 cccctggtgg ggagtttaca gtgtccccta gaaacgctcc aggtgaaata ctatggagcg
481 cgcccctagg ccctgaccta aatccctacc tatcccattt ggccagaatg tacaatggtt
541 atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa cgcgttcacc gccgggaaga
601 ttatatttgc agcagttcca ccaaattttc caactgaagg cttaagtcct agccaggtca
661 ctatgttccc ccatataata gtagatgtta gacaattaga acctgtgctg attcccttac
721 ccgatgttag gaataacttc tatcattaca atcagtcaaa tgactccact attaagttga
781 tagcaatgtt gtatacacca cttagggcta ataatgctgg agatgatgtt ttcacagttt
841 cgtgccgagt tctcacgaga ccatcccccg attttgattt catattttta gtgccaccca
901 cagttgagtc aagaactaaa ccattctctg tcccagtttt aactgttgag gagatgacca
961 attcaagatt ccccatccct ttggaaaagt tgttcacagg ccccagcagt gcctttgttg
1021 ttcaaccaca aaacggcagg tgcacaactg atggcgtgct cctaggcacc acccaacttt
1081 ctcctgtcaa catctgcacc ttcagagggg atgtcaccca catcacaggt agtcgcaact
1141 acacaatgaa tttggcttct caaaattgga acaactatga cccaacagaa gaaatcccag
1201 cccctctagg aactccagat tttgtaggga agattcaagg cgtgctcacc caaaccacaa
1261 ggacagatgg ttcaacacgc ggccacaaag ctacagtgta cactgggagc gccgactttg
1321 ctccaaaact gggtagagtt caatttgaaa ctgacacaga ccatgatttt gaagctaatc
1381 aaaacacaaa gttcacccca gtcggtgtca tccaagatgg tagcaccacc caccgaaacg
1441 aaccccaaca gtgggtgctc ccaagttact caggcagaaa tactcacaat gtacatttgg
1501 cccccgctgt agcccccacc tttccgggtg agcaacttct ctttttcaga tccaccatgc
1561 ccggatgcag cgggtacccc aacatggatt tggactgtct gctcccccag gaatgggtgc
1621 agtacttcta ccaagaggca gccccagcac aatctgatgt ggctctgcta agatttgtga
1681 atccagacac aggtagggtt ttgtttgagt gcaagcttca taaatcaggc tatgttacag
1741 tggctcacac tggccaacat gatttggtta tcccccccaa tggttacttt aggtttgatt
1801 cctgggtcaa ccagttctac acgcttgccc ccatgggaaa tggaacgggg cgtagacgtg
1861 tagtataatg gctggagctt tctttgctgg attggcatct gatgtccttg gctctggact
1921 tggttccctt atcaatgctg gggctggggc catcaaccaa aaagttgaat ttgaaaataa
1981 cagaaaattg caacaagcat ccttccaatt tagcagcaat ctgcaacagg cttcctttca
2041 acatgataaa gagatgctcc aagcacaaat tgaggccacc aaaaagctac aacaggaaat
2101 gatgaaagtt aagcaggcaa tgctcttaga gggtgggttc tctgagacag atgcagcccg
2161 cggggc
//