Typing tool
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Typing tool
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Complete norovirus genomes
| MH671553 | GII.2 | |
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| GII.P2 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7492
LOCUS MH671553 7536 bp RNA linear VRL 20-AUG-2019
DEFINITION Norovirus GII isolate BJFTJYX, complete genome.
ACCESSION MH671553
VERSION MH671553.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Ao,Y.
TITLE Genetic analysis of an emerging GII.P2-GII.2 norovirus associated
with an acute gastroenteritis outbreak in 2016, in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7536)
AUTHORS Ao,Y.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2018) Viral Diarrhea, Institute for Viral Disease
Control and Prevention of China CDC, No 100 Ying Xin Street Xuan Wu
District, Beijing, Beijing 100052, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BJFTJYX"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Beijing"
/collection_date="2016-12"
/collected_by="Yuanyun Ao"
/note="genotype: GII.P2-GII.2"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AXQ39877.1"
/translation="MKMASNDASAAAAVNSNNDNIKSSSDGMLNNMAVTLKRALGARP
KQPAPREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVMFSTAGGVSGLPELTTVGQPP
EANTAFSVPPLSQRENRDAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
IAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDS
WLSRRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGK
LKPLNILNILASCDWTFAGIVESLILMAELFDVFWTPPDVSAMIAPLLGDYELQGPED
IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLAREL
AKKIASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDAYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPPISTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTM
DELKKAIKNIIIRKCQIVYGGNTYTLESDGKGKVVVERVQSASVQINNEIAGAVHHLR
CARIRYYVKCVQEAIYSLLQIAGTVFVTSRIVSRMNIQNLWSRPLSEDADEATIKEGC
PKPRDEEEFIVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEG
TVATILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQVVEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNEHW
NGESFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGRIKKRLLWGSDL
ATMVRCARSFGGLMDELKAHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWD
STQQRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKVSINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLR
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGP
NHEDPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6713
/gene="ORF2"
CDS 5085..6713
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AXQ39878.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDIEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6713..7492
/gene="ORF3"
CDS 6713..7492
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AXQ39879.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPSSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFVTQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSAVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc tgctgccgct gctgtcaaca gcaacaacga
61 caacataaaa tcttcaagtg acggaatgct taataacatg gccgtcaccc ttaaacgagc
121 ccttggggcc cggcccaaac agccagcccc gagggaaaaa cccccaagac cccctagacc
181 accaacacca gaactaatca aaaggatccc tcccccacca cctaatgatg gggacgaacc
241 aaccgtgatg tttagcactg caggtggtgt ttctggccta cctgagctca caacagtcgg
301 tcaaccacct gaagctaaca ctgcctttag tgtgcccccc cttagccaaa gggaaaacag
361 ggacgctaag gaaccgttaa ctggggctat tctggaaatg tgggatgggg agatttatca
421 ttatggactg tatgtggaaa aagggcttgt gctaggcgtg cacaagccgc cggctgccat
481 cagcatagcc aaagtggaat tgacacccct ctcactgtat tggaggcccg tgtacacgcc
541 tcagtacctc atatctcctg acaccttgag gaaacttcac ggtgagttat tcccctatac
601 agcctttgaa aacaactgtt atgccttctg ctgttgggtt ttggacctca acgattcatg
661 gctaagcaga aggatgatta gtaggactac tggcttcttc aggccctacc aagagtggaa
721 caggaagcct ctccctacta tggatgactc aaaattgaag aaggtcgcaa acatcgttct
781 ttgcgcattg tcatcattgt tcactaggcc cattaaggat ataattggca aacttaaacc
841 ccttaacatc ctaaacattc tggcctcatg cgattggacc ttcgctggta tagtagaatc
901 actaatcctc atggctgaac tctttgatgt gttctggaca cccccagatg tgtctgcaat
961 gatcgcaccc ctcctcggcg actatgagct acaaggtccc gaagacatcg ctgtggagct
1021 cgtgcccgtt gtgatgggtg ggataggtct ggtgttggga ttcaccaaag agaaaatagg
1081 caagatgctc tcctctgcag cgtcaactct gagggcgtgc aaagatcttg gagcctatgg
1141 attggagata ctgaaactag tcatgaaatg gtttttccca aagaaggatg aggccaacga
1201 actggctatg gttagagcca ttgaagacgc cgtattagat ctggaggcta ttgagaacaa
1261 ccatatgacc actctattga aagacaagaa cagccttgca gcatacatga agaccctgga
1321 tatggaagag gaaaaagcta ggaagctgtc caccaaatca gcctcccctg acattgtggg
1381 cactataaac gccctgctgg ctaggatcgc tgccgcgcgt tccctagttc acagggccaa
1441 ggaggagctc tccagcaggc caagaccagt cgttttgatg atctctggca agccagggat
1501 aggaaagacc cacttggcca gagaactggc aaagaaaatt gcctcgacac tcacaggaga
1561 ccaaagggtt ggtcttatcc cacggaatgg agttgaccat tgggatgcct acaaaggtga
1621 gagagtggtg ctctgggatg actatgggat gagcaacccc atccacgatg cgctgaggct
1681 gcaggaattg gcagacacat gtccattaac tctaaattgt gacaggattg aaaacaaggg
1741 gaaggtcttc gacagcgacg cgatcataat caccaccaat ttggtcaacc ccgcgccgct
1801 ggattatgtc aactttgagg cctgctccag acgtatagac ttccttgtat atgctgatgc
1861 cccagaagtc gagaaagcaa agcgggactt tcccggtcaa ccggacatgt ggaaggacgc
1921 ctatcgctct gacttctcac acattaaact acaacttgcg ccacaaggtg ggtttgacaa
1981 aaatggcaac accccacatg gtaaaggagt gatgaagact ctcactgcca gctcactggt
2041 cgcacgtgcc tctggtctct tgcacgagag attagatgag tacgagctgc aaggtccgcc
2101 catctcaacc ttcaactttg accgtaacaa aattgcagcg ttcagacaac tcgctgctga
2161 aaacaagtac ggtctggtag acacgatgag ggtgggcaac cagctcagaa atgtcacgac
2221 catggatgaa ctcaagaagg ctatcaagaa catcataatc agaaagtgcc agatagtcta
2281 tggtggcaac acttacacgc ttgagtctga cggcaagggc aaggttgtag ttgagagggt
2341 gcagagcgcc agcgtgcaaa ttaacaatga gatcgctggt gcagtacacc atcttagatg
2401 tgccagaata aggtattatg tcaagtgtgt ccaagaggct atatactcac tcctccagat
2461 tgccggcacg gtgtttgtca cttcacgcat cgtaagccgc atgaacatcc aaaatctgtg
2521 gtctaggcca ctatctgaag atgcagatga ggccaccata aaagaggggt gccccaaacc
2581 tagggatgaa gaagaattta tcgtatcctc agatgatatc aagccagagg gtaagaaagg
2641 taaaaacaag agtggccggg gcaagaaaca cacggcattc tcaagcaaag ggctcagtga
2701 tgaggagtac gaagagtaca aaagaatcag agaggagaga aatggcaagt actccataga
2761 ggaataccta caggacagag acaagtacta tgaagaggtg gccattgcca gggcaactga
2821 agaagacttc tgtgaagaag aagaggttaa gattcgtcag aggatcttca ggccaacaag
2881 aaagcaacgc aaggaagaaa gagccaacct tggccttgtt accgggtctg agatcaggaa
2941 gagaaaccca gatgacttca aaccaaaagg aaaactgtgg gccgacgacg acaggagcgt
3001 cgattacaat gaaagaatca gctttgaggc cccaccaagc atttggtcta gaattgtcaa
3061 ctttggttct ggatgggggt tctgggtgtc acctagcctc ttcataacat caacacacgt
3121 catacctcaa ggcataactg aggcctttgg tgtacccata aggcaggtgc aaatacacaa
3181 atcgggcgag ttctgtcgcc tgagattccc aaaacccatc agaacagatg tgtcaggcat
3241 gatactggag gagggagcgc ctgaaggcac tgttgccacc atactcatca aaagaaccac
3301 tggagagctg atgcctctag cagcaagaat gggcacccac gcgaccatga ggatacaagg
3361 gcgcacagtg ggcggccaga tgggaatgtt gctcactggg tccaatgcga agagcatgga
3421 tctcggcacc acgcccggtg actgtgggtg tccctacatt tacaaaaggg gcaatgatta
3481 catagtcatt ggagttcaca cagcagccgc tcgtggcgga aacactgtca tctgcgctac
3541 acaagtagtg gagggtgagg ctactctcga gggtggtgac aataaaggaa catattgtgg
3601 ggcaccaatc ttaggccctg gaaatgcccc aaaactgagc actaaaacca agttctggag
3661 gtcctctaca acaccactcc cacccggcac gtacgagccg gcatatctgg gaggaaaaga
3721 cccccgagtc aaaggtgggc catctctgca acaagtcatg cgagaccaac tgaagccgtt
3781 caccgaaccc cgtggtaagc caccaaaacc aagtgtcctt gaagctgcta aaaagacaat
3841 tatcaatgtg ttagagcaaa caatagaccc cccacagaag tggacgtacg cgcaagcgtg
3901 cgcgtctctt gacaaaacca catctagtgg gtacccccac cacgtgcgca aaaacgagca
3961 ctggaatggg gaatctttca cgggaaaatt ggctgaccag gcatcaaagg ctaacctaat
4021 gtttgaagag gggaaacaca tgaccccagt ttatacagct gcccttaagg atgagttggt
4081 caaaactgag aaagtgtatg ggaggataaa gaagaggttg ctctggggct ctgacttggc
4141 caccatggtg aggtgtgcgc gctcctttgg cggtttgatg gacgaactca aggcccactg
4201 tgtgacactc ccgataaggg ttggcatgaa tatgaatgaa gatggaccaa tagtctttga
4261 gaaacattcc agatacaggt atcactatga tgcagactac tccaggtggg attcaacaca
4321 gcagagagcc gttctggccg cagccatgga gattatggtt aaattctcag cagaaccaca
4381 attagcccaa atagttgcag aggatctgtt gtcgcccagt gttgttgacg tgggcgactt
4441 taaagtttcc atcaacgaag gattaccatc gggtgtccct tgcacctctc aatggaactc
4501 catcgcacac tggctcctca ccttgtgtgc cctttctgaa gttacagacc tctctcctga
4561 cattgtgcaa gccaactccc tcttctcctt ctatggtgat gatgaaattg tgagtacaga
4621 catcaaatta gacccagaaa agttgacggg gaagttgaga gaatatggtc tcaaacccac
4681 ccgtcctgac aaaactgagg gccccttgat tattagcgag gatctgaacg gcctgacctt
4741 cctgaggaga accgttaccc gcgaccctgc aggatggttt ggcaaactgg accaaagctc
4801 catacttagg caattgtatt ggaccaaagg ccctaatcat gaagacccct ttgagtcaat
4861 gattccacat tcccagaggc ccatacaact catgtcactc ttgggtgaag cagcactgca
4921 tgaaccatca ttttacagca agatcagcaa acttgtgata tctgagttga aagaaggtgg
4981 aatggatttt tacgtgccca ggcaagaacc tatgtttagg tggatgagat tctcggattt
5041 gagcacgtgg gagggcgatc gcaatcttgc tcccagtctt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctact gatggtgcag ccggcctcgt gccagaaagt aacaatgagg
5161 tcatggctct tgaacccgtg gctggtgccg ccttggcagc cccggtcacc ggtcaaacaa
5221 atattataga cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaatttacag
5281 tttctccccg aaatgcccct ggtgaagtgc tactgaatct agagttgggt ccagaattaa
5341 atccttatct ggcacattta gcaagaatgt acaatgggta tgccggtggg atggaggtgc
5401 aggtcatgtt ggctgggaac gcgttcacag ccggcaagtt ggtcttcgcc gccgtgccac
5461 ctcacttccc agttgaaaat cttagcccac agcaaattac catgttccct cacgtgatca
5521 tagatgtgag aaccttggaa cctgttttat taccactccc tgatgttagg aataatttct
5581 tccattataa tcagaaagat gaccccaaga tgagaattgt ggccatgctt tatacccccc
5641 ttaggtctaa tggttcgggt gatgatgtgt ttacagtctc ctgcagagtg ttaactagac
5701 cttcccctga ttttgacttt acatacctgg tgccaccaac agtggagtct aaaacaaaac
5761 cattcaccct cccaatactc acacttgggg aactttccaa ttctaggttc ccagtgtcca
5821 tagaccagat gtacaccagc cctaatgaag ttatatcagt gcagtgtcaa aatggtaggt
5881 gcacactgga cggggagctc caagggacaa cacaactcca agtcagtggc atttgtgctt
5941 tcaaaggtga agtgaccgcc cacttgcatg acaatgatca cctatataat gttaccatca
6001 caaacttgaa tgggtcccct tttgatccct ccgaggatat ccccgcccct ctgggcgtgc
6061 ctgatttcca gggaagggtc tttggtatca tctcccaaag agacaaacac aatagtcccg
6121 ggcacaatga accagcaaac aggggacacg acgctgtggt ccctacttac acagcacagt
6181 acactccaaa actgggacaa attcaaattg gcacatggca gactgacgac cttacagtca
6241 accaaccagt caaattcacc ccagttggac tcaatgacat tgaacatttt aaccaatggg
6301 tggtccctag gtatgctggt gccctaaatc tcaacacaaa ccttgcccct tctgttgctc
6361 cagtattccc aggagagcgc ctgctcttct tcagatcata cattcccctc aagggtggtt
6421 atggaaaccc agccattgat tgcctactac cacaagagtg ggtgcaacac ttctatcagg
6481 aagcagcccc ttcaatgagt gaggtggccc ttgtcaggta catcaacccg gatactggtc
6541 gggcactgtt tgaggccaag cttcacagag ctggtttcat gacagtctcg agcaacacca
6601 gtgccccggt ggttgtgcct gccaacggat acttcagatt tgattcttgg gtgaatcagt
6661 tctattctct cgcccccatg ggaactggga atgggcgtag aagggttcaa taatggctgg
6721 agcttttgta gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaatcaa
6781 tgcaggtgct aatgcaataa atcagagggc agaatttgat tttaatcaga aattgcagca
6841 aaattctttt aatcatgaca aggagatgtt gcaggctcag attcaggcaa ctaagcagct
6901 gcaggcagac atgatggcta tcaaacaagg ggtcttgacc gctggcggct tttcccctgc
6961 tgatgcagcc agaggtgctg tgaacgcgcc catgacacag gcgctggatt ggaatggcac
7021 aagatattgg gcaccaagct ccatgaggac cacatcctat tctggaaagt tcacatcaac
7081 cgccccagtg aggcaggccg acttccagca cacccaaagc cggccttcga gtggctcttc
7141 tgtgtcttct tttgtcaccc agtcttcaag gccaactctg actacaacta ctggttcctc
7201 acatggtaca gcctcatcaa attcaactcg cagcacaagc ctctcccaat cagcggtctc
7261 cagagctaca tctaggactg gtgagtgggt tagagatcaa aatagaaatt tggaacccta
7321 catgcatggt gccttacaga cagcctttgt caccccacct tccagcaggg cgtctgacgg
7381 gacagtctca accgtcccga aaggtgtttt ggactcctgg acacctgcgt ttaacacccg
7441 caggcagccg ctttttgcac acctccgtaa gaggggggag tcacaagctt agtgaaaagg
7501 tgaaaattta tttaggatga attgatttta cctttt
//