Typing tool
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Typing tool
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Complete norovirus genomes
| MH638229 | GI.1 | |
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| GI.P1 |
ORF1: 1..5356
ORF2: 5340..6932
ORF3: 6932..7570
LOCUS MH638229 7591 bp ss-RNA linear VRL 19-JUL-2019
DEFINITION Norovirus GI isolate BA81265 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MH638229
VERSION MH638229.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7591)
AUTHORS Pan,R.W., Koster,B.L., Vo,S., Balansay,M.S., Hayes,M.E., Graf,P.C.
and Myers,C.A.
TITLE Acute Gasteoenteritis Surveillance Program
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7591)
AUTHORS Pan,R.W., Koster,B.L., Vo,S., Balansay,M.S., Hayes,M.E., Graf,P.C.
and Myers,C.A.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2018) Operational Infectious Diseases, Naval
Health Research Center, 140 Sylvester Road, San Diego, CA 92106,
USA
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7591
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="BA81265"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="10-Nov-2017"
/note="genotype: GI.P1"
gene <1..5356
/gene="ORF1"
CDS <1..5356
/gene="ORF1"
/inference="ab initio prediction:Prodigal:2.60"
/inference="similar to AA sequence:UniProtKB:Q83883"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AXQ39995.1"
/translation="KDVVPAAASSENANNNSSIKSRLLARLKGVSGTTTPPNSIQITN
QSMALGLIGQAPAPKATAVETPKQQRDRPPRTAAEVQQNLCWTEKPLDQNVKAWDELD
HTTKQQILDEHAEWFDAGGLGPSTLPSNHERHSNDDSGGHQVKWSAKEGVNLGIGGLT
TVPGPEWNMCPLPPADQRSTTPAVEPIIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQ
AAFSITRITIQPISAWWRICYVPQPKQRLTYDQLKELENEPWPYAAVTNNCFEFCCQV
MCLDDTWLQRKLISSGRFHHPTQDWSRDTPEFQQDSKLEMVRDAVLAAINGLVSRPFK
DLLGKLKPLNVLNLLSNCDWTFMGVVEMVVLLLELFGVFWNPPDVSNFIASLLPDFHL
QGPEDLARDLVPVVLGGIGLAIGFTRDKVGKMMKNAVDGLRAATQLGQYGLEIFSLLK
KYFFGGDQTEKTLKDIESAVIDMEVLSSTSVTQLVRDKQSARAYMAILDNEEEKARKL
SVRNADPHVVSSTNALISRISMARAALAKAQAEMTSRMRPVVIMMCGPPGIGKTKAAE
HLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQEDCNKLQAIAD
SAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPEV
EHTRKVSPGDTNALKDCFKPDFSHMKMELAPQGGFDNQGNTPFGKGTMKPTTINRLLI
QAVALTMERQDEFQLQGPTYDFDTDRVSAFTKMARANGIGLISMASLGKKLRGVSTIE
GLKNALLGYKIAKCSIQWQSRVYIIESDGGNVHIKEDKQALTPSQQAINTASLAITRL
KAARAVAYASCFQSAVTTILQMAGSALVINRAVKRMFGTRTAAMALEGPEKEHNCRVH
KAKEAGKGPIGHDDMIEKFGLCETEEEESEDQIQITPNDAIPEGKNKGKTKKGRGRKN
NYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGE
TEMEIRHRVFYKSKSRKHQQEQRRQLGLVTGSDIRKRKPIDWTPPKNEWADDDREVDY
NEKINFEAPPTMWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLTNIAIHQ
AGEFTQFRFSKKIRPDLTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRI
QGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTV
VCAVQASEGETALEGGDKGHYAGHEIVRHGNGPALSTKTKFWRSSPEPLPPGVYEPAY
LGGKDPRVQNGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPSP
WSYADACQSLDKTTSSGFPYHKRKNDDWNGTTFVRELGDQAAHANNMYENGKHMKPIY
TAALKDELVKPEKVYQKIKKRLLWGADLGTVIRAARAFGPFCDAIKPHVIKLPIKVGM
NIIEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRLTASPELAEVVAQ
DLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSEATGLSPDVVQSM
SYFSFYGDDEIVSTDIDFDPARLTQILKEYGLRPTRPDKTEGPIQVRKNVDGLVFLRR
TISRDAAGFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKVQLISLLGEASLHG
EKFYRKISSKVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV
"
mat_peptide <1..1180
/gene="ORF1"
/product="p48"
mat_peptide 1181..2269
/gene="ORF1"
/product="NTPase"
mat_peptide 2270..2872
/gene="ORF1"
/product="p22"
mat_peptide 2873..3286
/gene="ORF1"
/product="VPg"
mat_peptide 3287..3829
/gene="ORF1"
/product="Pro"
mat_peptide 3830..5353
/gene="ORF1"
/product="RdRp"
gene 5340..6932
/gene="ORF2"
CDS 5340..6932
/gene="ORF2"
/inference="ab initio prediction:Prodigal:2.60"
/inference="similar to AA sequence:UniProtKB:Q83884"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AXQ39993.1"
/translation="MMMASKDATSNVDGASGAGQLVPEANTSDPLAMDPVAGSSTAVA
TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQSTLFPHVIADVRTLDPIEV
PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF
LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPIGSMGISPDNVQSVQFQNGRCTLDGRL
VGTTPVSLSQVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHVNMTQ
FGHSSQTQFDVDTTPETFVPHLGSIQANGIGSGNYIGVLSWISPPSHPSGSQVDLWKI
PNYGSSVTEATHLAPSVFPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHFASEQA
PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS
RFYQLKPVGTASSARGRLGLRR"
gene 6932..7570
/gene="ORF3"
CDS 6932..7570
/gene="ORF3"
/inference="ab initio prediction:Prodigal:2.60"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AXQ39994.1"
/translation="MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQEN
SFKHDREMIGYQVEASNQLLAKNLATRYSLLRAGGLSSADAARSIAGAPVTRIVDWNG
VRVSAPESSVTTLRSGGFMSVPIPYTSKQKQIQPSGISNPNYSPSSISRTTSWVESQN
SLRFGNLSPYHTEALNTVWLTPPGSTASSTLSSVPRGYFNTDRLPLFANNRR"
ORIGIN
1 gaaagacgtc gttcctgctg ctgctagcag tgaaaatgct aacaacaaca gtagtatcaa
61 gtctcgccta ttggcgagac tcaaaggtgt gagtggaaca acgactccac ctaattctat
121 acaaataact aaccaaagta tggctctggg gctaattggc caggccccag ctccaaaggc
181 cacagccgtg gagaccccta aacaacagag ggataggcct ccacggactg ccgccgaagt
241 ccaacaaaat ttatgttgga ccgagaagcc gctagaccaa aatgtcaagg cgtgggacga
301 attggaccac acaacgaaac aacagatact tgatgagcat gctgaatggt ttgatgctgg
361 tggcttaggc ccaagcacac ttcctagcaa ccatgaacgt cactcaaatg atgatagtgg
421 aggccatcaa gtgaaatggt cggctaaaga gggtgtgaat ctcgggatag gagggcttac
481 aaccgttccc gggcccgagt ggaacatgtg cccgctaccc ccagcagatc aaaggagtac
541 gacacctgca gtcgagccca taataggtga tatgatcgaa ttttatgaag gtcatatcta
601 ccattatgcc atttatatcg gccaaggcaa gacagtgggt gtccactctc ctcaagcagc
661 attttcaata acaagaatca ccatacaacc tatatcagca tggtggcgga tatgttatgt
721 cccacagcca aaacagagac ttacatatga ccaactcaaa gaattggaga acgaaccatg
781 gccatacgct gcagttacca ataactgctt tgaattctgc tgtcaggtca tgtgtctaga
841 tgacacttgg ctacaaagaa agctcatctc ctctggacgg ttccaccatc caacccagga
901 ttggtctcgg gacactccag agtttcaaca agacagcaaa cttgagatgg tcagagatgc
961 agtgctggcc gcgataaatg ggctagtgtc gcggcccttt aaggatctcc taggcaaact
1021 caaacctttg aatgtgctca atttactttc aaattgtgac tggacattta tgggggtcgt
1081 ggaaatggtg gtcctccttt tggagctttt tggggtgttc tggaacccac ctgatgtgtc
1141 taacttcata gcttcactcc taccagattt ccatctacag ggccctgaag atcttgctag
1201 agatctcgtg ccagtggtcc tgggtggtat tggtctggct ataggattta ctagggacaa
1261 ggtgggtaaa atgatgaaaa atgctgttga cggactgcgg gctgcgactc agctcggaca
1321 gtacggcctg gaaatattct cactattaaa gaagtacttc tttggtggag accagacaga
1381 gaagaccctg aaagatatag agtcagctgt tattgacatg gaagtgctgt cgtccacctc
1441 agtgacccaa ctcgtaaggg ataagcaatc tgcgcgggct tacatggcta tcttggataa
1501 tgaagaagaa aaagccagaa agctgtccgt taggaatgct gacccacatg tggtatcctc
1561 caccaatgct ctcatatctc ggatatcaat ggccagagcc gccctagcca aggcccaggc
1621 tgagatgact agtaggatgc gtcctgtggt tattatgatg tgtgggcccc ctggcatagg
1681 aaaaaccaaa gcagcggagc atctggccaa acgattggcc aacgagatac ggcctggcgg
1741 caaagttggg ctagttccac gtgaggcagt ggaccattgg gatggctatc atggtgaaga
1801 ggtgatgtta tgggatgact atgggatgac caaaatacag gaggattgca acaaactaca
1861 ggccatagct gactcggccc ccttgacgct caactgtgac cgaatagaga acaaagggat
1921 gcaattcgta tctgatgcta tagtcataac caccaatgcc cctggcccag cccccgtaga
1981 ctttgtcaac ctcggaccgg tctgccggag ggtggacttc cttgtgtact gtacggcacc
2041 agaagtggaa cacacaagga aagttagtcc aggcgacact aatgcactaa aggattgttt
2101 taaacctgat ttctctcaca tgaaaatgga actggccccc cagggtggtt ttgataacca
2161 agggaacact ccatttggca agggtacaat gaagccaact accataaata gattgttaat
2221 ccaggccgtg gcattgacaa tggagaggca ggacgagttc caactccaag gtcctactta
2281 tgactttgac actgataggg tctctgcatt tactaagatg gcccgagcta atgggatagg
2341 tcttatatcc atggcctccc tgggcaagaa attgcgtggg gtttccacca ttgaaggctt
2401 gaagaatgcc cttctaggat acaagatagc aaagtgcagt atacagtggc agtcaagggt
2461 gtacattata gaatcagatg gtggcaatgt acacatcaag gaggacaagc aggctctaac
2521 tccttcacag caggcaatta acacagcctc cctggccatc acacgactca aggcggctag
2581 ggctgtagct tacgcctcat gttttcaatc tgccgtcacc accatactac aaatggcagg
2641 gtctgctctg gtcatcaatc gggcagttaa gcgcatgttt ggcacccgta cggcagccat
2701 ggcgctagag ggaccagaaa aggaacataa ttgtagggtt cataaagcta aggaagctgg
2761 aaaggggcct ataggacatg atgacatgat agaaaagttt ggtctgtgtg agactgaaga
2821 ggaagaaagt gaagatcaaa tccaaataac cccaaatgat gccattccag aggggaagaa
2881 caaaggtaag accaagaagg gccgcggccg caaaaataat tacaatgcat tctcccgacg
2941 tgggttgagt gatgaggagt atgaagaata caagaagatc agggaagaga agaatggtaa
3001 ttacagcata caagagtatc tggaggatcg tcaacggtac gaggaagagt tagcagaggt
3061 tcaagcaggt ggtgacggtg gcataggaga gactgagatg gagattcgcc acagagtttt
3121 ctacaaatcc aaaagcagaa aacaccaaca agagcagcga cgccaacttg gcctagtaac
3181 tggatcggac atcaggaaac gtaagcctat tgactggacc ccaccaaaga atgaatgggc
3241 cgatgatgat agggaagttg actacaatga aaagatcaat tttgaggccc ccccaacaat
3301 gtggagccgg gtcacaaagt ttgggtcagg gtggggcttc tgggtcagtc caaccgtgtt
3361 catcaccacc acgcatgtgg tgccaactgg cgtgaaggaa ttctttggcg aacccctcac
3421 caacatagca atccatcaag caggtgagtt cacacagttc aggttttcca aaaagatacg
3481 ccctgacctg acgggcatgg tgttggagga agggtgccct gaaggaacag tctgttcagt
3541 cctgatcaaa cgagactcgg gtgagcttct ccctctagct gtccgtatgg gggctattgc
3601 ctctatgagg atacagggcc gcctcgttca tggccaatca ggaatgctgc tgacaggagc
3661 gaatgcaaaa ggaatggacc ttggaactat accaggtgac tgtggggcac catacgtcca
3721 caagcgcggt aatgactggg tcgtgtgtgg ggtccatgct gcagccacaa aatcaggtaa
3781 cactgtggtc tgtgctgtgc aggctagtga aggtgagacc gcattagaag gcggagacaa
3841 ggggcattat gcgggtcatg aaattgtaag gcacgggaat ggcccagcat tgtcaactaa
3901 aacaaagttc tggagatcct ccccagagcc attaccccct ggtgtttatg agcctgcata
3961 cctaggagga aaggaccctc gtgtccaaaa cggcccctcc ctccaacagg ttctgcgtga
4021 ccaattgaaa cccttcgcag aaccccgtgg tcgcatgcct gagcccggtt tgctggaggc
4081 agcagttgaa actgtaacat ccatgttaga gcaaacaatg gatactccaa gcccatggtc
4141 ttatgctgat gcttgtcaat ctcttgataa aactacaagt tcaggctttc cctaccacaa
4201 gaggaagaat gatgattgga acggcaccac ctttgtcagg gagcttggcg atcaggccgc
4261 acatgctaac aacatgtatg agaatggtaa acacatgaaa cccatctaca cagcagcttt
4321 gaaggatgag ctagtcaaac ccgaaaaggt ctaccaaaag atcaaaaagc gcctgttatg
4381 gggtgctgat ctcgggactg taatcagagc tgcccgagct tttggcccat tttgtgatgc
4441 tataaagcca catgtcatta agctaccaat aaaggttggt atgaacataa tagaagatgg
4501 ccccctaatt tatgctgagc atgccaagta caaaaaccac tttgacgcgg attatacggc
4561 atgggattca acacagaaca gacaaattat gacagaatct ttctccatta tgtcacgcct
4621 tacggcctcc cccgagttgg ccgaagtcgt ggctcaggat ttattggcac catctgagat
4681 ggatgtgggt gactatgtca taagagttaa ggaaggctta ccatctgggt tcccgtgtac
4741 ttcccaagta aacagcataa atcattggat aattactctc tgtgcacttt ctgaagccac
4801 tggtctgtca cctgacgtgg tgcaatcaat gtcatatttt tcattttatg gtgatgatga
4861 gattgtgtca actgacatag attttgaccc agcccgtctc acccaaatcc ttaaggaata
4921 tggccttaga ccaacaaggc cagacaaaac tgaaggacca atacaggtca ggaaaaatgt
4981 ggatggatta gttttcttgc gccgcaccat ctcccgcgac gctgcagggt tccagggcag
5041 attggacagg gcctcaattg aacggcagat tttctggacc cgcgggccca atcattcaga
5101 tccttcagag accttagtac cacacaccca aagaaaagtg caattgatct cactattggg
5161 agaggcttca cttcatggag aaaagttcta cagaaagatc tccagcaaag tcatacatga
5221 aatcaagact ggtggattgg agatgtatgt tccagggtgg caggccatgt tccgctggat
5281 gcgcttccat gacctcggat tgtggacagg agatcgcaat ctcctgcccg aattcgtaaa
5341 tgatgatggc gtctaaggac gctacgtcaa acgtggatgg cgccagcggc gctggtcagt
5401 tggtaccgga ggctaatact tctgaccctc ttgcaatgga tcctgtagcg ggttcttcga
5461 cagcggttgc gactgctgga caagtaaacc ccattgatcc ttggataatt aacaattttg
5521 tgcaagctcc ccaaggggaa tttacaatct ccccaaataa tacccccggt gatgttttat
5581 ttgatctgag tttaggtccc catcttaacc ccttcttgct acatctgtca caaatgtata
5641 atggttgggt tggcaacatg agagttagga ttatgctggc tggtaatgct ttcactgcag
5701 gtaagatcat agtctcctgt atacctcctg gttttggatc gcataatctc actatagcac
5761 aatcaactct gtttccacat gtgattgctg atgttaggac tctagaccct atagaagtgc
5821 ctttggaaga tgttagaaat gttcttttcc ataataatga taggaatcaa caaaccatgc
5881 gccttgtgtg catgttgtac acccctctcc gcactggtgg cggtacaggt gattcctttg
5941 ttgtggcggg gcgggtcatg acctgcccta gtcctgattt taatttcttg ttcctggttc
6001 cccccacagt tgagcagaaa actagacctt tcacccttcc aaatttgcct ttgagctctt
6061 tgtccaattc acgcgctcct cttccaattg gcagcatggg catctctcca gacaatgtcc
6121 agagtgtaca gttccaaaat ggtcgatgta ctttggacgg tcgtttggtt ggcactaccc
6181 cagtttcact gtcccaggtt gctaagataa ggggcacttc aaatggtact gtcattaacc
6241 ttaccgaact ggatggtaca cctttccacc cttttgaggg ccctgccccc attggattcc
6301 cagacctcgg tggttgtgat tggcacgtta atatgacaca gtttggccac tctagtcaga
6361 cacaatttga tgtggatacc acccctgaaa ccttcgtccc tcatttggga tcaatccagg
6421 caaatggtat tggtagtggc aattatattg gtgttctcag ttggatctcc cctccatcac
6481 atccctctgg ttcccaggta gatctttgga agatccccaa ctatgggtcg agtgttactg
6541 aggcaacaca tctggcccca tcagttttcc cacccggctt cggggaagtg ctggttttct
6601 tcatgtcaaa gatgccaggg cctggcgcct acaatctgcc ctgtttgctg ccacaagagt
6661 acatctcaca ttttgcaagt gaacaagccc ccactgtggg tgaggctgct ctactccatt
6721 atgttgatcc tgatacaggg cggaaccttg gggagttcaa agcatacccc gatggattcc
6781 tcacttgtgt ccccaatgga gccagctcgg gtccacaaca attaccaatc aatggggttt
6841 ttgtttttgt ctcttgggtg tctaggttct atcaattgaa gcctgtggga actgccagct
6901 cggcaagagg taggcttgga ctgcgccgat aatggcccaa gctataattg gtgcaattgc
6961 tgcctccaca gcgggcagtg cccttggggc aggcatacag gttggtggtg aggcagcact
7021 ccaaagtcaa agataccaac agaatctaca actgcaagag aattccttta aacatgatag
7081 agaaatgatt ggatatcagg tagaggcttc aaatcaattg ctagctaaga atctggcaac
7141 cagatactca ctcctccgtg ctggaggcct atccagtgct gatgcggcaa ggtccatagc
7201 gggagcccca gtgacccgaa tcgtggactg gaacggtgtg agggtgtcag cccctgagtc
7261 ttctgtaacc acattgaggt ctggtggctt tatgtcggtg ccaataccat acacatctaa
7321 acagaaacag attcaaccat ctggcattag taatccaaat tattctcctt cttccatttc
7381 tcgaaccact agttgggttg aatcacaaaa ttcattaaga tttgggaatt tatccccata
7441 ccacacagag gccctcaata cagtgtggtt gaccccacct ggctcaacag catcttccac
7501 gctgtcttct gtgccacgtg gctatttcaa tacagataga ttgccattgt tcgcaaacaa
7561 taggcgataa tgttgtaata tgaaatgtgg g
//