Typing tool
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Typing tool
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Complete norovirus genomes
| MH638228 | GI.1 | |
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| GI.P1 |
ORF1: 1..5364
ORF2: 5348..6940
ORF3: 6940..7578
LOCUS MH638228 7598 bp ss-RNA linear VRL 19-JUL-2019
DEFINITION Norovirus GI isolate ESP20695 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION MH638228
VERSION MH638228.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7598)
AUTHORS Pan,R.W., Koster,B.L., Vo,S., Balansay,M.S., Hayes,M.E., Graf,P.C.
and Myers,C.A.
TITLE Acute Gasteoenteritis Surveillance Program
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7598)
AUTHORS Pan,R.W., Koster,B.L., Vo,S., Balansay,M.S., Hayes,M.E., Graf,P.C.
and Myers,C.A.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2018) Operational Infectious Diseases, Naval
Health Research Center, 140 Sylvester Road, San Diego, CA 92106,
USA
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7598
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="ESP20695"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="07-Nov-2017"
/note="genotype: GI.P1"
gene <1..5364
/gene="ORF1"
CDS <1..5364
/gene="ORF1"
/inference="ab initio prediction:Prodigal:2.60"
/inference="similar to AA sequence:UniProtKB:Q83883"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AXQ39990.1"
/translation="MASKDVVPAAASSENANNNSSIKSRLLARLKGVSGTTTPPNSIQ
ITNQSMALGLIGQAPAPKATAVETPKQQRDRPPRTAAEVQQNLCWTEKPLDQNVKAWD
ELDHTTKQQILDEHAEWFDAGGLGPSTLPSNHERHSNDDSGGHQVKWSAKEGVNLGIG
GLTTVPGPEWNMCPLPPADQRSTTPAVEPIIGDMIEFYEGHIYHYAIYIGQGKTVGVH
SPQAAFSITRITIQPISAWWRICYVPQPKQRLTYDQLKELENEPWPYAAVTNNCFEFC
CQVMCLDDTWLQRKLISSGRFHHPTQDWSRDTPEFQQDSKLEMVRDAVLAAINGLVSR
PFKDLLGKLKPLNVLNLLSNCDWTFMGVVEMVVLLLELFGVFWNPPDVSNFIASLLPD
FHLQGPEDLARDLVPVVLGGIGLAIGFTRDKVGKMMKNAVDGLRAATQLGQYGLEIFS
LLKKYFFGGDQTEKTLKDIESAVIDMEVLSSTSVTQLVRDKQSARAYMAILDNEEEKA
RKLSVRNADPHVVSSTNALISRISMARAALAKAQAEMTSRMRPVVIMMCGPPGIGKTK
AAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQEDCNKLQA
IADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTA
PEVEHTRKVSPGDTNALKDCFKPDFSHMKMELAPQGGFDNQGNTPFGKGTMKPTTINR
LLIQAVALTMERQDEFQLQGPTYDFDTDRVSAFTKMARANGIGLISMASLGKKLRGVS
TIEGLKNALLGYKIAKCSIQWQSRVYIIESDGGNVHIKEDKQALTPSQQAINTASLAI
TRLKAARAVAYASCFQSAVTTILQMAGSALVINRAVKRMFGTRTAAMALEGPEKEHNC
RVHKAKEAGKGPIGHDDMIEKFGLCETEEEESEDQIQITPNDAIPEGKNKGKTKKGRG
RKNNYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGG
IGETEMEIRHRVFYKSKSRKHQQEQRRQLGLVTGSDIRKRKPIDWTPPKNEWADDDRE
VDYNEKINFEAPPTMWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLTNIA
IHQAGEFTQFRFSKKIRPDLTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIAS
MRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSG
NTVVCAVQASEGETALEGGDKGHYAGHEIVRHGNGPALSTKTKFWRSSPEPLPPGVYE
PAYLGGKDPRVQNGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDT
PSPWSYADACQSLDKTTSSGFPYHKRKNDDWNGTTFVRELGDQAAHANNMYENGKHMK
PIYTAALKDELVKPEKVYQKIKKRLLWGADLGTVIRAARAFGPFCDAIKPHVIKLPIK
VGMNIIEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRLTASPELAEV
VAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSEATGLSPDVV
QSMSYFSFYGDDEIVSTDIDFDPARLTQILKEYGLRPTRPDKTEGPIQVRKNVDGLVF
LRRTISRDAAGFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKVQLISLLGEAS
LHGEKFYRKISSKVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVND
DGV"
mat_peptide <1..1188
/gene="ORF1"
/product="p48"
mat_peptide 1189..2277
/gene="ORF1"
/product="NTPase"
mat_peptide 2278..2880
/gene="ORF1"
/product="p22"
mat_peptide 2881..3294
/gene="ORF1"
/product="VPg"
mat_peptide 3295..3837
/gene="ORF1"
/product="Pro"
mat_peptide 3838..5361
/gene="ORF1"
/product="RdRp"
gene 5348..6940
/gene="ORF2"
CDS 5348..6940
/gene="ORF2"
/inference="ab initio prediction:Prodigal:2.60"
/inference="similar to AA sequence:UniProtKB:Q83884"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AXQ39991.1"
/translation="MMMASKDATSNVDGASGAGQLVPEANTSDPLAMDPVAGSSTAVA
TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQSTLFPHVIADVRTLDPIEV
PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF
LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPIGSMGISPDNVQSVQFQNGRCTLDGRL
VGTTPVSLSQVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHVNMTQ
FGHSSQTQFDVDTTPETFVPHLGSIQANGIGSGNYIGVLSWISPPSHPSGSQVDLWKI
PNYGSSVTEATHLAPSVFPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHFASEQA
PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS
RFYQLKPVGTASSARGRLGLRR"
gene 6940..7588
/gene="ORF3"
CDS 6940..7578
/gene="ORF3"
/inference="ab initio prediction:Prodigal:2.60"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AXQ39992.1"
/translation="MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQEN
SFKHDREMIGYQVEASNQLLAKNLATRYSLLRAGGLSSADAARSIAGAPVTRIVDWNG
VRVSAPESSVTTLRSGGFMSVPIPYTSKQKQIQPSGISNPNYSPSSISRTTSWVESQN
SLRFGNLSPYHTEALNTVWLTPPGSTASSTLSSVPRGYFNTDRLPLFANNRR"
ORIGIN
1 atggcgtcga aagacgtcgt tcctgctgct gctagcagtg aaaatgctaa caacaacagt
61 agtatcaagt ctcgcctatt ggcgagactc aaaggtgtga gtggaacaac gactccacct
121 aattctatac aaataactaa ccaaagtatg gctctggggc taattggcca ggccccagct
181 ccaaaggcca cagccgtgga gacccctaaa caacagaggg ataggcctcc acggactgcc
241 gccgaagtcc aacaaaattt atgttggacc gagaagccgc tagaccaaaa tgtcaaggcg
301 tgggacgaat tggaccacac aacgaaacaa cagatacttg atgagcatgc tgaatggttt
361 gatgctggtg gcttaggccc aagcacactt cctagcaacc atgaacgtca ctcaaatgat
421 gatagtggag gccatcaagt gaaatggtcg gctaaagagg gtgtgaatct cgggatagga
481 gggcttacaa ccgttcccgg gcccgagtgg aacatgtgcc cgctaccccc agcagatcaa
541 aggagtacga cacctgcagt cgagcccata ataggtgata tgatcgaatt ttatgaaggt
601 catatctacc attatgccat ttatatcggc caaggcaaga cagtgggtgt ccactctcct
661 caagcagcat tttcaataac aagaatcacc atacaaccta tatcagcatg gtggcggata
721 tgttatgtcc cacagccaaa acagagactt acatatgacc aactcaaaga attggagaac
781 gaaccatggc catacgctgc agttaccaat aactgctttg aattctgctg tcaggtcatg
841 tgtctagatg acacttggct acaaagaaag ctcatctcct ctggacggtt ccaccatcca
901 acccaggatt ggtctcggga cactccagag tttcaacaag acagcaaact tgagatggtc
961 agagatgcag tgctggccgc gataaatggg ctagtgtcgc ggccctttaa ggatctccta
1021 ggcaaactca aacctttgaa tgtgctcaat ttactttcaa attgtgactg gacatttatg
1081 ggggtcgtgg aaatggtggt cctccttttg gagctttttg gggtgttctg gaacccacct
1141 gatgtgtcta acttcatagc ttcactccta ccagatttcc atctacaggg ccctgaagat
1201 cttgctagag atctcgtgcc agtggtcctg ggtggtattg gtctggctat aggatttact
1261 agggacaagg tgggtaaaat gatgaaaaat gctgttgacg gactgcgggc tgcgactcag
1321 ctcggacagt acggcctgga aatattctca ctattaaaga agtacttctt tggtggagac
1381 cagacagaga agaccctgaa agatatagag tcagctgtta ttgacatgga agtgctgtcg
1441 tccacctcag tgacccaact cgtaagggat aagcaatctg cgcgggctta catggctatc
1501 ttggataatg aagaagaaaa agccagaaag ctgtccgtta ggaatgctga cccacatgtg
1561 gtatcctcca ccaatgctct catatctcgg atatcaatgg ccagagccgc cctagccaag
1621 gcccaggctg agatgactag taggatgcgt cctgtggtta ttatgatgtg tgggccccct
1681 ggcataggaa aaaccaaagc agcggagcat ctggccaaac gattggccaa cgagatacgg
1741 cctggcggca aagttgggct agttccacgt gaggcagtgg accattggga tggctatcat
1801 ggtgaagagg tgatgttatg ggatgactat gggatgacca aaatacagga ggattgcaac
1861 aaactacagg ccatagctga ctcggccccc ttgacgctca actgtgaccg aatagagaac
1921 aaagggatgc aattcgtatc tgatgctata gtcataacca ccaatgcccc tggcccagcc
1981 cccgtagact ttgtcaacct cggaccggtc tgccggaggg tggacttcct tgtgtactgt
2041 acggcaccag aagtggaaca cacaaggaaa gttagtccag gcgacactaa tgcactaaag
2101 gattgtttta aacctgattt ctctcacatg aaaatggaac tggcccccca gggtggtttt
2161 gataaccaag ggaacactcc atttggcaag ggtacaatga agccaactac cataaataga
2221 ttgttaatcc aggccgtggc attgacaatg gagaggcagg acgagttcca actccaaggt
2281 cctacttatg actttgacac tgatagggtc tctgcattta ctaagatggc ccgagctaat
2341 gggataggtc ttatatccat ggcctccctg ggcaagaaat tgcgtggggt ttccaccatt
2401 gaaggcttga agaatgccct tctaggatac aagatagcaa agtgcagtat acagtggcag
2461 tcaagggtgt acattataga atcagatggt ggcaatgtac acatcaagga ggacaagcag
2521 gctctaactc cttcacagca ggcaattaac acagcctccc tggccatcac acgactcaag
2581 gcggctaggg ctgtagctta cgcctcatgt tttcaatctg ccgtcaccac catactacaa
2641 atggcagggt ctgctctggt catcaatcgg gcagttaagc gcatgtttgg cacccgtacg
2701 gcagccatgg cgctagaggg accagaaaag gaacataatt gtagggttca taaagctaag
2761 gaagctggaa aggggcctat aggacatgat gacatgatag aaaagtttgg tctgtgtgag
2821 actgaagagg aagaaagtga agatcaaatc caaataaccc caaatgatgc cattccagag
2881 gggaagaaca aaggtaagac caagaagggc cgcggccgca aaaataatta caatgcattc
2941 tcccgacgtg ggttgagtga tgaggagtat gaagaataca agaagatcag ggaagagaag
3001 aatggtaatt acagcataca agagtatctg gaggatcgtc aacggtacga ggaagagtta
3061 gcagaggttc aagcaggtgg tgacggtggc ataggagaga ctgagatgga gattcgccac
3121 agagttttct acaaatccaa aagcagaaaa caccaacaag agcagcgacg ccaacttggc
3181 ctagtaactg gatcggacat caggaaacgt aagcctattg actggacccc accaaagaat
3241 gaatgggccg atgatgatag ggaagttgac tacaatgaaa agatcaattt tgaggccccc
3301 ccaacaatgt ggagccgggt cacaaagttt gggtcagggt ggggcttctg ggtcagtcca
3361 accgtgttca tcaccaccac gcatgtggtg ccaactggcg tgaaggaatt ctttggcgaa
3421 cccctcacca acatagcaat ccatcaagca ggtgagttca cacagttcag gttttccaaa
3481 aagatacgcc ctgacctgac gggcatggtg ttggaggaag ggtgccctga aggaacagtc
3541 tgttcagtcc tgatcaaacg agactcgggt gagcttctcc ctctagctgt ccgtatgggg
3601 gctattgcct ctatgaggat acagggccgc ctcgttcatg gccaatcagg aatgctgctg
3661 acaggagcga atgcaaaagg aatggacctt ggaactatac caggtgactg tggggcacca
3721 tacgtccaca agcgcggtaa tgactgggtc gtgtgtgggg tccatgctgc agccacaaaa
3781 tcaggtaaca ctgtggtctg tgctgtgcag gctagtgaag gtgagaccgc attagaaggc
3841 ggagacaagg ggcattatgc gggtcatgaa attgtaaggc acgggaatgg cccagcattg
3901 tcaactaaaa caaagttctg gagatcctcc ccagagccat taccccctgg tgtttatgag
3961 cctgcatacc taggaggaaa ggaccctcgt gtccaaaacg gcccctccct ccaacaggtt
4021 ctgcgtgacc aattgaaacc cttcgcagaa ccccgtggtc gcatgcctga gcccggtttg
4081 ctggaggcag cagttgaaac tgtaacatcc atgttagagc aaacaatgga tactccaagc
4141 ccatggtctt atgctgatgc ttgtcaatct cttgataaaa ctacaagttc aggctttccc
4201 taccacaaga ggaagaatga tgattggaac ggcaccacct ttgtcaggga gcttggcgat
4261 caggccgcac atgctaacaa catgtatgag aatggtaaac acatgaaacc catctacaca
4321 gcagctttga aggatgagct agtcaaaccc gaaaaggtct accaaaagat caaaaagcgc
4381 ctgttatggg gtgctgatct cgggactgta atcagagctg cccgagcttt tggcccattt
4441 tgtgatgcta taaagccaca tgtcattaag ctaccaataa aggttggtat gaacataata
4501 gaagatggcc ccctaattta tgctgagcat gccaagtaca aaaaccactt tgacgcggat
4561 tatacggcat gggattcaac acagaacaga caaattatga cagaatcttt ctccattatg
4621 tcacgcctta cggcctcccc cgagttggcc gaagtcgtgg ctcaggattt attggcacca
4681 tctgagatgg atgtgggtga ctatgtcata agagttaagg aaggcttacc atctgggttc
4741 ccgtgtactt cccaagtaaa cagcataaat cattggataa ttactctctg tgcactttct
4801 gaagccactg gtctgtcacc tgatgtggtg caatcaatgt catatttttc attttatggt
4861 gatgatgaga ttgtgtcaac tgacatagat tttgacccag cccgtctcac ccaaatcctt
4921 aaggaatatg gccttagacc aacaaggcca gacaaaactg aaggaccaat acaggtcagg
4981 aaaaatgtgg atggattagt tttcttgcgc cgcaccatct cccgcgacgc tgcagggttc
5041 cagggcagat tggacagggc ctcaattgaa cggcagattt tctggacccg cgggcccaat
5101 cattcagatc cttcagagac cttagtacca cacacccaaa gaaaagtgca attgatctca
5161 ctattgggag aggcttcact tcatggagaa aagttctaca gaaagatctc cagcaaagtc
5221 atacatgaaa tcaagactgg tggattggag atgtatgttc cagggtggca ggccatgttc
5281 cgctggatgc gcttccatga cctcggattg tggacaggag atcgcaatct cctgcccgaa
5341 ttcgtaaatg atgatggcgt ctaaggacgc tacgtcaaac gtggatggcg ccagcggcgc
5401 tggtcagttg gtaccggagg ctaatacttc tgaccctctt gcaatggatc ctgtagcggg
5461 ttcttcgaca gcggttgcga ctgctggaca agtaaacccc attgatcctt ggataattaa
5521 caattttgtg caagctcccc aaggggaatt tacaatctcc ccaaataata cccccggtga
5581 tgttttattt gatctgagtt taggtcccca tcttaacccc ttcttgctac atctgtcaca
5641 aatgtataat ggttgggttg gcaacatgag agttaggatt atgctggctg gtaatgcttt
5701 cactgcaggt aagatcatag tctcctgtat acctcctggt tttggatcgc ataatctcac
5761 tatagcacaa tcaactctgt ttccacatgt gattgctgat gttaggactc tagaccctat
5821 agaagtgcct ttggaagatg ttagaaatgt tcttttccat aataatgata ggaatcaaca
5881 aaccatgcgc cttgtgtgca tgttgtacac ccctctccgc actggtggcg gtacaggtga
5941 ttcctttgtt gtggcggggc gggtcatgac ctgccctagt cctgatttta atttcttgtt
6001 cctggttccc cccacagttg agcagaaaac tagacctttc acccttccaa atttgccttt
6061 gagctctttg tccaattcac gcgctcctct tccaattggc agcatgggca tctctccaga
6121 caatgtccag agtgtacagt tccaaaatgg tcgatgtact ttggacggtc gtttggttgg
6181 cactacccca gtttcactgt cccaggttgc taagataagg ggcacttcaa atggtactgt
6241 cattaacctt accgaactgg atggtacacc tttccaccct tttgagggcc ctgcccccat
6301 tggattccca gacctcggtg gttgtgattg gcacgttaat atgacacagt ttggccactc
6361 tagtcagaca caatttgatg tggataccac ccctgaaacc ttcgtccctc atttgggatc
6421 aatccaggca aatggtattg gtagtggcaa ttatattggt gttctcagtt ggatctcccc
6481 tccatcacat ccctctggtt cccaggtaga tctttggaag atccccaact atgggtcgag
6541 tgttactgag gcaacacatc tggccccatc agttttccca cccggcttcg gggaagtgct
6601 ggttttcttc atgtcaaaga tgccagggcc tggcgcctac aatctgccct gtttgctgcc
6661 acaagagtac atctcacatt ttgcaagtga acaagccccc actgtgggtg aggctgctct
6721 actccattat gttgatcctg atacagggcg gaaccttggg gagttcaaag cataccccga
6781 tggattcctc acttgtgtcc ccaatggagc cagctcgggt ccacaacaat taccaatcaa
6841 tggggttttt gtttttgtct cttgggtgtc taggttctat caattgaagc ctgtgggaac
6901 tgccagctcg gcaagaggta ggcttggact gcgccgataa tggcccaagc tataattggt
6961 gcaattgctg cctccacagc gggcagtgcc cttggggcag gcatacaggt tggtggtgag
7021 gcagcactcc aaagtcaaag ataccaacag aatctacaac tgcaagagaa ttcctttaaa
7081 catgatagag aaatgattgg atatcaggta gaggcttcaa atcaattgct agctaagaat
7141 ctggcaacca gatactcact cctccgtgct ggaggcctat ccagtgctga tgcggcaagg
7201 tccatagcgg gagccccagt gacccgaatc gtggactgga acggtgtgag ggtgtcagcc
7261 cctgagtctt ctgtaaccac attgaggtct ggtggcttta tgtcggtgcc aataccatac
7321 acatctaaac agaaacagat tcaaccatct ggcattagta atccaaatta ttctccttct
7381 tccatttctc gaaccactag ttgggttgaa tcacaaaatt cattaagatt tgggaattta
7441 tccccatacc acacagaggc cctcaataca gtgtggttga ccccacctgg ctcaacagca
7501 tcttccacgc tgtcttctgt gccacgtggc tatttcaata cagatagatt gccattgttc
7561 gcaaacaata ggcgataatg ttgtaatatg aaatgtgg
//