Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MH608287 | GII.13 | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..4831
ORF2: 4812..6440
ORF3: 6440..7171
LOCUS MH608287 7205 bp ss-RNA linear VRL 12-AUG-2018
DEFINITION Norovirus GII isolate NV/CMRHP59/CAM/2014 nonstructural polyprotein
(ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes,
complete cds.
ACCESSION MH608287
VERSION MH608287.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7205)
AUTHORS Yinda,C.K., Ghogomu,S.M., Conceicao-Neto,N., Deboutte,W.,
Vanhulle,E., Maes,P., Van Ranst,M. and Matthijnssens,J.
TITLE Gut virome analysis of Cameroonians: high diversity of enteric
viruses, including potential interspecies transmitted viruses
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7205)
AUTHORS Yinda,C.K., Ghogomu,S.M., Conceicao-Neto,N., Deboutte,W.,
Vanhulle,E., Maes,P., Van Ranst,M. and Matthijnssens,J.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2018) Department of Microbiology and Immunology,
Rega Institute, University of Leuven, Herestraat 49, Leuven,
Flemish Brabant 3000, Belgium
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.10
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7205
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NV/CMRHP59/CAM/2014"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Cameroon"
/collection_date="2014"
/note="genotype: GII"
gene <1..4831
/gene="ORF1"
CDS <1..4831
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AXK59007.1"
/translation="ISGLPELTTVPQPDVANTAFSVPPLSLRENREAKEPLTGAILEM
WDGEIYHYGLYVEKGLVLGVHKPPAAISMAKVELTPLSLYWRVVYTPQYLISPETLRR
LNGEAFPYTAFDNNCYAFCCWVLDLNDSWLNRRMVQRTTGFFRPYQEWNRKPLPTIDD
SKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDWTFAGIVESLILLAEL
FGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSS
AASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMT
TLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALLARIAAARSLVHRAKE
ELSSRMRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVGLIPRNGVDHWDAYKG
ERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSEVIIITTNLANP
APLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQ
GGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQGPTVTTFNFDRNRITA
FRQLAAENKYGLVDTMRVGNQLKGVKTMEELKQAIKNVTIKRCRIIYGGSTYDLESDG
KGKVLVEKVKNTSVQTNNELAGALHHLKHARIRYYVKCVQEAVYSIIQIAGAAFVTTR
IVRRMNIQELWSKPPLDQGESEAREEAPKSEDDEFIISSKDIKEEGKKGKNKTGRGKK
HTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEE
EIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNEK
LDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEAFGVPIKQIQVHKSGE
FCRLRFPKPIRSDVTGMILEEGAPEGTVATVLIKRPTGELMPLAARMGTHATMKIQGR
MVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICA
TQGSEGEATLEGGDDKGTYCGAPILGPGGAPNLSTKTKFWRSSNTPLPPGTYEPAYLG
GRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTIINVLEQTLDPPQKWT
YAQACASLDKTTSSGHPHHARKNEFWNGETFTGKLADQASKANLMFEEGKHMTPVYTA
ALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEMKAHCISLPVRVGMNM
NEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDL
LAPSVVDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTKLSPDIVQANSM
FSFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTV
TRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPS
FYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..727
/gene="ORF1"
/product="p48"
mat_peptide 728..1825
/gene="ORF1"
/product="NTPase"
mat_peptide 1826..2356
/gene="ORF1"
/product="p22"
mat_peptide 2357..2755
/gene="ORF1"
/product="VPg"
mat_peptide 2756..3298
/gene="ORF1"
/product="Pro"
mat_peptide 3299..4828
/gene="ORF1"
/product="RdRp"
gene 4812..6440
/gene="ORF2"
CDS 4812..6440
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AXK59005.1"
/translation="MKMASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPTPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANRGDNWDQNLLQLTYPSGASYDPTDEVPAPLGTQDFSGILYG
VLTQDNVSEGTGEAKNAKGVYISTTSGKFTPKIGSIGLHSITENVHPNQQSRFTPVGV
AQNENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLPGQDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6440..7171
/gene="ORF3"
CDS 6440..7171
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AXK59006.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDAAKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRAQVKSPSNPSQRTAAPSSIRSLSTQSTSLGSTS
SGGSSTTSSSSRTADWVQQQRALSPYMQGALQTAYVTPPSSRVSSVSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 aatctctggc ctgcccgagc tcacaacagt cccccaaccg gatgtggcca acacggcatt
61 cagtgtccca ccgctgagct tgagagaaaa cagggaggcc aaggaaccgc tgacaggggc
121 aatactagag atgtgggatg gagagatata ccactatggt ctgtacgtgg agaagggctt
181 agtgttgggt gtgcacaaac cacctgcagc tataagcatg gcaaaagtgg agctgacgcc
241 gttgtcattg tactggcgtg tggtctacac cccccaatac ctcatctccc ctgaaactct
301 caggaggctc aacggagagg cattccctta cactgccttt gacaacaact gctatgcctt
361 ttgctgctgg gtattagacc ttaatgactc atggcttaac aggaggatgg tgcaaaggac
421 aacaggcttt ttcagacctt accaagagtg gaacagaaaa cccctgccca ctatagatga
481 ctccaaaatc aagaaggtgg caaacatatt cctgtgttca ttgtccacgt tgttcaccag
541 acctataaaa gacctcatag gaaagattaa gccattaaac atcttaaaca tcctggcaac
601 gtgtgactgg acattcgccg gaatagtgga gtctctgata ttacttgcag aactctttgg
661 agttttctgg acacccccag atgtgtctgc tatgattgct cccttacttg gagactacga
721 gttgcaaggg ccagaagacc ttgccgttga actcgtacct gtggtaatgg gagggatcgg
781 tttggtgttg ggattcacca aagagaaaat tggaaaaatg ttgtcctcag cagcatcaac
841 gctcagggct tgtaaagatc ttggtgccta tggcttagag atactcaaat tggtcatgaa
901 atggttcttc ccaaagaaag aagaggccaa tgagctagcc atggtgagag ctatagagga
961 tgctgtactg gatcttgagg caatagaaaa taatcacatg acaactctgc tgaaagacaa
1021 agacagccta gcaacctaca tgaaaaccct agacatggag gaggagaaag ccagaagatt
1081 gtccacaaaa tctgcatccc ctgacatagt tgggacgatc aacgccctgc tggctcgaat
1141 agcggcggct aggtcactag tccacagggc taaggaggag ttgtctagca ggatgaggcc
1201 agtggttgtt atgatatctg gcaaaccagg gataggcaaa actcatttgg ccagggaggt
1261 ggcaagaaag gtggcatcca ctctcacagg ggatcaaaga gtcgggctca taccgagaaa
1321 cggtgtggac cattgggatg catacaaagg cgagagagtc gtgctgtggg acgactatgg
1381 catgagcaac cccattcatg atgctctgcg catacaagaa ctggctgata cgtgccccct
1441 taccttaaat tgtgacagaa ttgaaaataa gggaaaagtt tttgacagtg aagtcataat
1501 aattacaaca aaccttgcca acccagctcc acttgattat gtcaacttcg aggcctgttc
1561 caggaggatt gacttcctgg tgtacgctga ggcgccagaa gtagaaaagg caaaacgaga
1621 ctttcctggt caaccagata tgtggaagga tgccttcaag tcggactttt cacatatcaa
1681 gttgcaactt gcaccccaag gcggctttga caagaatggc aacaccccac acggaaaagg
1741 agtgatgaag accctcacca ccggttccct gattgcccgt gcatcaggct tactgcatga
1801 gaggatggat gaatttgaac tccaaggccc cacagtcacc accttcaatt ttgaccggaa
1861 tagaatcacc gcatttagac aattggctgc agaaaacaag tatgggttgg tggacaccat
1921 gagagttggc aatcaattaa aaggggtgaa aaccatggaa gaactcaaac aagcaatcaa
1981 gaatgtgacc atcaagaggt gccgaatcat ctacggtggc tccacgtatg accttgaatc
2041 tgatggcaag ggcaaagttc tggtggaaaa ggtcaagaac acatctgtgc aaaccaacaa
2101 cgagttggcc ggagccctgc accacctcaa acatgcccga atcaggtatt atgtcaaatg
2161 tgtgcaagaa gcagtctact ctatcataca gattgccggc gctgcgtttg tcaccacacg
2221 cattgtacgc cgcatgaata tacaagagct ttggtcgaag ccaccattag accaaggtga
2281 atcagaggct agggaagagg cccccaagtc agaagatgac gagttcatca tatcttctaa
2341 ggacatcaag gaggaaggaa agaagggcaa aaacaagact ggccgtggca agaaacatac
2401 tgcattctct agcaagggct tgagcgatga ggagtatgac gagtacaaga ggataagaga
2461 agagagaaat gggaagtact ctatagagga gtaccttcaa gacagagaca ggtactatga
2521 ggagctcgcc atcgccaagg ccacggaaga agacttctgc gaggaggagg agatcaaaat
2581 ccgtcagagg atcttccgtc ccacccggaa acaaaggaag gaagagaggg ccacattagg
2641 gctagtaact ggttcagaaa tcagaaaaag aaaccctgac gacttcaaac ctaaagggaa
2701 actgtgggcc gatgacaaca gaagtgttga ctacaatgag aaactggact ttgaggcccc
2761 cccaagcata tggtctagga ttgtgagttt tggttctggt tggggcttct gggtatcacc
2821 aagcctgttc ataacatcaa ctcatgtaat ccctgcaggc ataacagagg cattcggagt
2881 ccccatcaaa caaatccagg tccacaagtc aggtgaattt tgccggctca ggttcccaaa
2941 accaatcaga tcagatgtga caggaatgat cttggaagaa ggcgcgcctg agggcaccgt
3001 ggcaaccgtg ctcatcaaac gccctaccgg agagctcatg ccccttgcag ctagaatggg
3061 aacacacgca accatgaaaa ttcaaggccg catggttggc ggacagatgg gtatgttgct
3121 cacaggttca aatgctaaag ggatggattt gggaacaact cctggtgatt gtggctgtcc
3181 ctacatctac aaaaggggca atgactatat agtcattggg gtgcacacag cagcagcccg
3241 tggtggaaac accgtcatct gtgccacaca gggaagtgag ggtgaggcaa ctcttgaggg
3301 tggagatgac aaagggacgt actgtggggc acccattcta ggccctgggg gggcaccgaa
3361 tttgagcacc aaaaccaagt tttggaggtc atcaaacacg cctcttccac cagggacata
3421 tgagcctgcc tacctcggtg gccgtgaccc gcgtgttaag ggtgggccct ccttgcagca
3481 ggtgatgaga gaccagttga agccattcac tgagcccagg ggtaaacctc caagaccaag
3541 cgtattggaa gcagccaaac aaaccatcat caacgtcctc gagcaaaccc tggaccctcc
3601 acaaaaatgg acctatgcac aggcgtgtgc ttcacttgac aaaaccacct ccagcgggca
3661 tccccaccac gcccgaaaga atgaattctg gaatggtgag accttcactg gtaaattggc
3721 agaccaagca tcaaaagcaa acctaatgtt tgaggaaggg aaacacatga caccagtgta
3781 tacagcagcc ctcaaggacg aactggtcaa gactgacaaa atctatggaa agatcaagaa
3841 gagactgctc tggggctctg acttgtccac catgattcgg tgcgccaggt cctttggcgg
3901 actcatggat gagatgaagg cacactgcat atcactccca gtccgagttg gcatgaacat
3961 gaatgaagat ggtccaataa tatttgagaa gcactccaga tataagtacc actatgatgc
4021 agactactcc cgctgggatt caacacaaca gagggcagta ctagcagcag ccttggaaat
4081 catggtcagg ttctctgcag aaccacaatt ggcacaaata gtcgctgagg atctgctggc
4141 ccccagtgtg gtagatgtag gagactttaa aatttcaata aatgaagggc tcccctctgg
4201 tgtaccatgc acttcccaat ggaattccat tgcacactgg ctgctaaccc tctgtgcctt
4261 gtctgaagtt accaaactat ctcctgacat tgtacaggca aattccatgt tttcatttta
4321 cggtgatgac gagattgtca gcaccgatat aaaattggat cctgaaaagt taaccaccaa
4381 attgaaggag tacggcctga aaccaactcg cccagacaaa accgagggac ccctgatcat
4441 cagtgaggat ttgaacggac tcactttcct tcggcggaca gtgactcgtg acccagctgg
4501 ctggtttgga aaattggacc aaagctcaat attgaggcag atgtactgga ctagaggacc
4561 aaatcatgaa gaccccaatg agacgatgat accccattct caaagaccca tacagctcat
4621 ggcactgctt ggtgaggcct cccttcacgg accctctttt tacagcaaaa ttagcaaatt
4681 ggtcataact gaactcaaag aaggtgggat ggacttttac gtgccaaggc aggaacccat
4741 gtttaggtgg atgaggtttt ctgacttgag cacgtgggag ggcgatcgca atctggctcc
4801 caattttgtg aatgaagatg gcgtcgaatg acgccgctcc gtcgaatgat ggtgcagcta
4861 gtctcgtacc agaggccatc aatgagacta tgccattgga acccgttgct ggtgcatcta
4921 ttgctgcccc agtggcggga caaactaaca taattgaccc ctggataaga acaaattttg
4981 tgcaagcccc aaatggagag tttacagtat caccaagaaa ttcccctggg gagattctgt
5041 taaatttaga gttagggcca gatctgaacc cttatttggc ccatctatca agaatgtaca
5101 atggatatgc tggaggtgtt gaagtgcaag tgctccttgc tgggaatgcg ttcacagcag
5161 gaaagatatt atttgcagca atcccaccca actttcctgt agatatgatt agcccagctc
5221 aaatcactat gcttccccat ttgattgtag atgttaggac attagaacct attatgatac
5281 ctttacctga tgttaggaat gtgttttatc attttaataa tcaaccccaa cctaggatga
5341 gattagtggc tatgctctat accccattga gatctaatgg ttcaggagat gatgtcttta
5401 ctgtgtcttg tagagtgttg actaggccaa cccctgattt tgaatttatt tacctggtgc
5461 ctccctctgt agagtccaag accaaaccat tcacacttcc aatattgacc atttctgaat
5521 taaccaactc ccggtttccc accccaattg agcaattgta cacggcccca aatgagaata
5581 atgttgtgca gtgtcaaaat ggaaggtgca ccttggatgg agagcttcag ggcaccaccc
5641 agctgctatc aagtgcagtt tgctcttaca ggggcaggac tgtggctaac agaggggaca
5701 attgggacca gaatttgctc cagctgacct acccaagtgg tgcaagctat gaccccactg
5761 atgaagtacc agcacccttg ggcacccagg atttcagtgg gatattatat ggggtgttga
5821 cccaagataa tgtaagtgag ggtacagggg aggccaaaaa tgctaaggga gtatacatat
5881 ccaccaccag tggaaaattc accccaaaaa ttgggtcaat tggattgcat tcaataactg
5941 aaaatgtgca ccccaatcaa caatcacggt tcacccctgt tggagttgct caaaatgaaa
6001 acaccccctt ccagcaatgg gttctaccac actacgcagg tgctctcgct ctaaacacca
6061 atttggcacc cgctgttgcc ccgactttcc ctggcgagca attactgttc ttcaggtccc
6121 gtgttccgtg tgttcaaggc ctgccggggc aggatgcttt catagattgt ctcctacctc
6181 aagagtgggt gaatcacttt taccaagagg ctgctccctc ccaagcagac gttgccctca
6241 tcaggtatgt caaccctgat actggtcgca cgctgtttga ggccaaattg cacagatcag
6301 gttttatcac tgtatcacat actggtgcct accctcttgt ggtcccccca aatggtcatt
6361 tcaggtttga ttcttgggtt aaccaattct actcactcgc ccccatggga actggcaatg
6421 ggcgtagaag ggttcaataa tggcaggagc atttatagct ggtctagccg gtgacatgct
6481 gacttctgct gttggttcac tgacctctgc aggagccaat gccatcaatc agaaattgaa
6541 ttttgattac aacaaacaac ttcaaaatgc atcctttcaa catgacaagg aaatgttgca
6601 ggcccaaatt gatgctgcaa agaaactcca gtcagaaatg attgcaatta agcatggggt
6661 tttgaccgcg ggcggctttt ccccagctga tgcagccaga ggggcagtca acgccccaat
6721 gacccgagtg ttggattggt cagggacacg ctactacgct ccaaattctg tgcaaaccac
6781 cagttattcc gggcaattca ccccctcgcc agtccatcgg gcacaggtga agtccccttc
6841 caatccatct cagcggactg cagctccaag cagtatccgg agcctgtcaa cccaatcaac
6901 ttctttaggc tccacctcct caggggggtc ctctacaacc tcctctagtt cgaggacagc
6961 agactgggta caacaacaaa gggctcttag cccgtacatg caaggagccc tgcagacggc
7021 atacgtaaca ccgccgtcta gtagggtctc cagtgtgagc tctgtctcaa cagtgcccaa
7081 aggggttttg gactcctgga cacctgtgtt taacacacgc aggcagccgc tatttgcaca
7141 cctcaggaag aggggggagt cacaggctta gtgaaaataa aatcacattt aaacattgat
7201 tatcc
//