Typing tool
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Typing tool
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Complete norovirus genomes
| MH443711 | GI.5 | |
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| GI.P12 |
ORF1: 1..5195
ORF2: 5179..6810
ORF3: 6810..7448
LOCUS MH443711 7508 bp RNA linear VRL 23-JUN-2018
DEFINITION Norovirus GI strain Hu/CHN/2018/GI.5/Yiwu/CB1 nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MH443711
VERSION MH443711.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7508)
AUTHORS Chen,B., Zhu,J. and Chen,W.
TITLE Molecular epidemiology of Noroviruses in outbreaks of acute
gastroenteritis in school
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7508)
AUTHORS Chen,B., Zhu,J. and Chen,W.
TITLE Direct Submission
JOURNAL Submitted (04-JUN-2018) Yiwu Center for Disease Prevention and
Control, Microbiology laboratory, Xuefeng Road 48, Yiwu, Zhejiang
322000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7508
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Hu/CHN/2018/GI.5/Yiwu/CB1"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="15-Apr-2018"
/note="genotype: GI.5"
gene <1..5195
/gene="ORF1"
CDS <1..5195
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AWV14078.1"
/translation="RGPSPAPPIELPKQQRDRAPRSVVETQQAMGWVEQPLDQNLPTW
EELSESEKRDILANNENWFDAGGLAPASIPSTHDRGREEGSLGHQVKWTAASGVDLGI
ADLTTVNGPAWNMCPMPPMDQRNSGPAKEPIIGDMLEFYEGHIYHYAIYIGQGKSIGV
HSPQAAFTIARITIHPIVAWWRVCYTPNTEQRLTYDQLKELENEPWPYAAVTNNCYEF
CCQVMGVQDSWLERRLVTSGRFNHPTQDWSKDTPDFQQDSKLEIVRDAVLAAINGLVS
KPFKDLLGKLKPLNVLNLLSNCDWTFMGVVETVILLMELFGVFWNPPDVSSFIASLLP
DMHLQGPEDLAKDLIPLVLGGIGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIF
AVLKKYFFGGDQTEKTLKDIEAAVIDMEVISATAITQLVRDKQSARTYMAILDAEEEK
ARKLSVKHADPHVVSTTNALIARISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKT
KAAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQ
AIADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCS
APDVEQIRRTNPGDTGALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLN
RLLIQAVALTMERQDEFQMQGPTYDFDADRVSAFTSLARANGLGLIDMAKLGKRLRSV
DSIHGLKNALNGYSITPCSIKWQARIYDIESDGTTVKIKENTAAQSQQQHSIDTAVLA
LTRLRAARAAAYASCLQSAITTILQMAGSALVIHRAVKRMFGTHSSTISLEGPTREHQ
CRAHVAKANGGGPIGHDDVIDKYGLCETEEEEETQEVKVCLPTAIQEGKNKGKTKKGR
GRRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEEMAEVQAGGDG
GIGETEMEIRHRVFYKSKSRKNRQEERHQLGLVTGSDIRKRKPIDWTPPKNEWADDNR
EVDYNEKINFEAPPTLWSRVVKFGSGWGFWVSPTVFITTTHVIPSGAREFFGEPIDSI
AIHRAGEFTQLRFSKKIRPDLTGMVLEEGCPEGVVCSILVKRDSGELLPLAVRMGAIA
SMKIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRNNDWVVCGVHAAATKS
GNTVVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSSKTKFWRSTTEPLPPGVY
EPAYLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSVLEQVMD
TPVPWSYADACQSLDKTTSSGHPYHKRKNDDWNGTTFIGELGEQAAHANNMYEQGKSM
KPLYTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPI
KVGMNSIEDGPMIYAEHARFKNHFDADYSAWDSTQNRQIMTESFSIMCRLTATPELAS
VVAKDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSQSYFSFYGDDEIVSTDIDFDPSRLTQVLKEYGLRPTRPDKSEGPIVLRRQIDGLV
FLRRTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPNETLIPHPQRKVQLISLLGEA
SLHGEKFYRKIASKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
mat_peptide <1..1019
/gene="ORF1"
/product="p48"
mat_peptide 1020..2108
/gene="ORF1"
/product="NTPase"
mat_peptide 2109..2711
/gene="ORF1"
/product="p22"
mat_peptide 2712..3125
/gene="ORF1"
/product="VPg"
mat_peptide 3126..3668
/gene="ORF1"
/product="Pro"
mat_peptide 3669..5192
/gene="ORF1"
/product="RdRp"
gene 5179..6810
/gene="ORF2"
CDS 5179..6810
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWV14076.1"
/translation="MMMASKDATPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRVILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLEPLEI
PLEDVRNTLYHNNDSQPTMRLLCMLYTPLRTGGSSGGTDAFVVAGRVLTCPSPDFNFL
FLVPPTVEQKTRPFSVPNIPLQNLSNSRVPSLIQGMVLSNDHAQTVQFQNGRCTTDGH
LLGTTPVSAGQLMKFRGKVTSGSKVLNLTELDGSPFLAFEAPAPAGFPDLGKCDWHVE
MSLYQDNNHADPIVLHAIEPNSSSFVPHLGSVSFKENVNVAGDYVCTIQYTSPPSDPQ
NPNADVDFWSIPDYGSNLAEASQLAPVVYPPGFGEAIVYFMSRIPGWNRTNRLNLVPC
LLPQEFIGHFVSEQAPAIGEAALLHYVDPDTNRNLGEFKLYPEGFITCVPNGTGPQQL
PLNGVFVFSSWVSRFYQLKPVGTASLARGRLGIRR"
gene 6810..7448
/gene="ORF3"
CDS 6810..7448
/gene="ORF3"
/note="minor structural protein; minor capsid protein;
small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWV14077.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLTLQQN
SFKHDKEMIAYQMEMSNNLLAKNLNTRYSLLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPNSSATTLRSGGFMTVPMPFSSKTRAPSTSGSIGMTNPNYGDTMSRVSSWVQS
QNSSVRSVSPFHRGALQTVWVTPPGSTSSSSVSSVPRFFNTDRLPLFANRGR"
ORIGIN
1 gcagggggcc atctccagcc ccccccattg agctacccaa acaacaacgg gaccgcgccc
61 ccagaagtgt agtggaaacc caacaggcca tgggttgggt agaacaacca ctggaccaga
121 acctaccaac ctgggaggag ttaagtgagt ccgagaaacg tgacatcttg gctaataatg
181 aaaactggtt tgatgcaggt ggacttgctc cggcatccat ccctagcaca catgaccgtg
241 gcagggaaga aggttctctg gggcatcaag tgaagtggac tgctgcttct ggtgtggacc
301 ttggaattgc tgatcttaca acagtcaatg gcccagcttg gaatatgtgc ccaatgcccc
361 ccatggacca acgcaacagt ggccccgcga aggaacccat aattggtgat atgctggagt
421 tttatgaggg ccacatatac cactatgcca tatatattgg gcagggaaaa tctattgggg
481 ttcattcacc acaggccgca tttaccatag ccaggataac catacacccc attgtggctt
541 ggtggcgagt gtgttacacc ccaaatactg aacaaagatt gacctatgat cagctcaagg
601 agttggagaa tgaaccatgg ccatacgcgg cagtgaccaa caactgctat gaattctgct
661 gccaagttat gggtgtgcaa gattcttggc tggagcgtcg gttggtgaca tctgggcgct
721 ttaaccatcc aacccaggat tggtctaaag acacaccaga ttttcagcaa gatagcaaat
781 tagaaattgt tagggatgct gtcttagctg caattaatgg tcttgtctca aaaccattta
841 aagatctcct tggaaaactc aagcccctca atgttctaaa cctactatct aattgtgatt
901 ggacatttat gggggttgtt gagactgtga tacttcttat ggagctgttt ggtgtgtttt
961 ggaacccacc tgatgtgtca agcttcatcg catcactctt gcctgacatg catttacaag
1021 gccctgaaga tcttgcaaag gatcttatac ccctagtact tggcggtata ggacttgcca
1081 ttggcttcac aaaagataaa gtcacgaagg tcatgaaaag tgcagttgaa ggtcttcgtg
1141 ctgcaactca gcttggccaa tatggtcttg agatcttcgc agtcctcaag aagtatttct
1201 ttggtggtga tcaaacggag aagacactca aggacataga ggcagcagtg attgatatgg
1261 aagttatctc agccacagcc ataacacaac tagtgagaga taaacaatct gcccgaacat
1321 acatggccat cctagacgct gaggaggaga aggctagaaa gctctctgtt aaacatgcag
1381 accctcatgt ggtgtccaca accaatgccc tcatcgcacg catatcattg gctagatcag
1441 cattggctaa agcccaggcc gagatgacta acagggttaa acctgtggtc attatgatgt
1501 gtggtccacc aggcattggt aagacgaagg ccgctgaata tctagccaag cgcctggcca
1561 atgagatcag accaggtggg aaggttggtt tggtgccgcg tgaggcagtt gatcattggg
1621 atggttacca tggtgaagaa gttatgttgt gggatgatta tgggatgtca aagatagctg
1681 atgactgcaa caagttacaa gccattgctg acacagcccc tttaacctta aattgtgaca
1741 ggattgaaaa gaagggactc cagtttgtgt ctgatgccat agttataacc actaatgccc
1801 ctggcccagc acctgtcgat tttgttaact tgggaccggt gtgtcggcgc gtggacttcc
1861 tcgtttattg ttcagctcca gatgtggaac agatccgccg caccaatcca ggtgacactg
1921 gtgccctcaa ggattgcttc aaaagcgatt tttcacacct aaagatggaa ttggcaccac
1981 aaggtggttt tgacaaccaa ggcaacacac cattcgggaa gggcaccatg cgcccaacca
2041 cattgaacag actgttgata caggctgtgg cacttactat ggagaggcag gatgaatttc
2101 aaatgcaagg ccccacatat gattttgacg ctgatcgggt ttcagccttc actagtctag
2161 ctcgagccaa tgggctgggc cttatagata tggctaagct agggaagaga ctaaggagtg
2221 tggactctat tcatggcctt aagaatgcac tcaatggtta ctctataaca ccatgtagca
2281 taaaatggca agctaggatc tatgacattg aatctgatgg tacaacagtc aaaataaaag
2341 aaaacactgc agctcaatcc cagcaacaac attcaataga cacagcagtc ctggcattga
2401 cccgcttgag ggcggcaaga gcagcagctt atgcctcttg tttgcaaagc gcaatcacca
2461 ctatccttca aatggcaggt tcggccctgg tcatacatcg ggctgtaaag cgaatgtttg
2521 gcacgcattc gagcactatc tcattagagg gccccactag agaacaccaa tgtagggccc
2581 acgtcgccaa ggccaatgga ggtggcccta tagggcacga tgatgtcatc gataaatatg
2641 gcctatgtga gactgaggag gaagaggaaa cccaggaggt taaagtttgt ctgcccacag
2701 ccatacaaga aggtaagaac aaagggaaaa ccaaaaaggg aagaggtagg cgtgccaact
2761 ataacgcttt ttcaagaaga ggcctcagtg atgaagagta tgaggagtac aagaagatta
2821 gagaagagaa aaatggcaac tacagcatac aggagtacct tgaagacagg caacgctatg
2881 aagaagaaat ggctgaagtc caggctggtg gggatggtgg aattggagag actgagatgg
2941 agatacgaca tcgtgtgttc tataagtcta agtccaggaa gaaccgtcaa gaggaacgcc
3001 accagttagg ccttgtgact ggcagtgata ttaggaagag gaaaccaatt gattggaccc
3061 cccccaaaaa tgaatgggct gatgacaaca gagaggttga ttacaatgag aagatcaatt
3121 ttgaggcccc cccaacattg tggagtcgtg ttgtcaaatt tggctcaggt tggggttttt
3181 gggttagccc tacagtgttt atcacaacca cccatgttat cccatcagga gctagagaat
3241 tctttggcga gcccatagac tcaattgcca tccaccgggc aggagaattc acccaattaa
3301 ggttttcaaa gaagatccgc cctgacctga cggggatggt cttagaagaa gggtgcccag
3361 aaggagtggt ctgttccata ctcgtaaaaa gggactctgg tgagttgctt cccctggccg
3421 ttcgtatggg ggccattgct tcaatgaaga tacaggggcg tctagtccat ggacaatctg
3481 gtatgttgct cactggggcc aatgctaaag gtatggacct gggtaccatc ccaggtgatt
3541 gtggtgcccc ttatgtttac aaaagaaata atgactgggt ggtctgtggt gtacatgccg
3601 cagccacaaa gtctggcaac acagtggtgt gtgcggtgca agctggtgag ggtgaaacaa
3661 ctttggaagg tggtgataaa ggccactatg ctgggcatga aataataaaa catagtaaag
3721 ggccagctct ctcaagcaag actaagttct ggagatctac aactgaacca ttaccaccag
3781 gtgtgtacga gccagcctac ctcggaggtc gcgaccctag ggtaaaaggc gggccgtcac
3841 tgcaacaggt tctgagagac caactcaagc cattcgctga accacgaggg cgcatgccag
3901 aacctgggtt gttggaagca gctgttgaaa ctgtgacatc tgtgttagaa caagtcatgg
3961 acacaccagt accttggtca tatgctgatg cttgccagtc tcttgataaa actaccagtt
4021 ctggccatcc ctatcacaag aggaagaatg atgattggaa tggaaccacc ttcattgggg
4081 agctcggtga gcaggctgcc catgctaaca acatgtatga gcaggggaaa tcaatgaagc
4141 ccctctatac tgctgcactc aaagatgaat tggttaagcc tgaaaaagtc taccagaaga
4201 tcaagaagcg cctcctatgg ggggctgact tgtccactgt catccgagca gccagagctt
4261 tcggtccatt ttgtgatgcc ataaaaccac atgtaataaa gttgcccatc aaagttggca
4321 tgaactcaat tgaagatggc ccaatgatat acgctgagca tgcccgattc aaaaatcact
4381 ttgatgctga ttattctgcc tgggattcaa cacaaaacag acaaattatg acagagtctt
4441 tctcaataat gtgtcgcctg acagcaacac cagaattggc ttcggtggtt gccaaggatc
4501 tccttgcacc ttctgagatg gatgttgggg actatataat aagagtcaaa gaaggtttac
4561 catcaggatt tccttgtact tctcaagtca acagcataaa ccactggctc atcactctct
4621 gtgcactctc tgaggtcacg ggcctttctc cagatgtcat acagtcacaa tcttactttt
4681 ccttttatgg ggatgacgag atagtatcaa ctgatattga tttcgaccca tcccgcttaa
4741 cccaggtgct taaagagtat ggtcttcggc ccacacgccc tgacaaaagt gaaggaccaa
4801 tagtgttgag aaggcagatc gatggcttgg tgttcctgag aagaactata tcaaaggatg
4861 cagctggttt tcaaggcaga ttggacagag gctccatcga gagacaattg tggtggaccc
4921 gcggcccaaa tcatgatgac ccaaatgaaa ccctgatacc ccacccacaa agaaaggttc
4981 agcttatatc tctgcttggc gaggcctcac tacatgggga gaagttttac aggaagatag
5041 ctagtaaggt tatccaggaa attaaaactg gtggtcttga aatgtacgtg ccaggttggc
5101 aggcaatgtt ccgctggatg cgcttccatg atcttgggtt gtggacagga gatcgcaatc
5161 ttctgcctga attcgtaaat gatgatggcg tctaaggacg ctacaccaag cgcagatggc
5221 gcgaatggcg ccggtcagct cgtgccggag gttaataatg ctgaaccact gcctcttgat
5281 cctgtggctg gggcttctac tgccttagct actgctggtc aagttaatat gattgatcct
5341 tggattttta ataattttgt ccaagcccct cagggcgaat tcacaatctc ccccaataat
5401 acccccggtg atatattgtt tgatttgcaa ttgggacctc atctcaatcc cttccttgcc
5461 catttgtcac aaatgtataa tggttgggtt ggtaacatgc gagtcagggt catcctggca
5521 ggtaacgcat ttaccgccgg taaagtgata atttgctgtg tcccccctgg cttccaatct
5581 aggaccctat caattgctca ggctaccctc tttcctcatg tgattgctga tgttcgtaca
5641 ttagaaccac ttgaaatccc actggaggat gttagaaaca cactgtacca taataatgac
5701 agccagccga caatgcgctt gttgtgcatg ctgtacacgc cacttcgcac tggtggtagt
5761 tctggtggca cagacgcttt tgtcgtcgca gggagagttt taacttgccc aagtccagac
5821 ttcaattttc tcttcctggt tcccccaact gtggaacaaa agacacggcc ttttagtgtc
5881 cccaatatcc cactccagaa tctttccaac tcccgagttc ctagcctaat ccaaggcatg
5941 gttctctcta atgaccatgc acaaacggtc caattccaga atggcaggtg tactactgac
6001 ggtcacctgc tggggaccac ccctgtttct gctggtcagc ttatgaaatt cagaggtaag
6061 gtaacttcag gttcaaaagt actaaatttg acagaactag atggttcacc atttctggcc
6121 tttgaggccc cagcccctgc tggattccct gaccttggaa agtgtgattg gcacgtcgag
6181 atgagtctct atcaagataa taatcatgca gaccctattg tgttgcatgc cattgaaccc
6241 aactcatctt cttttgtccc gcaccttggt agtgtttcct ttaaagagaa tgttaatgta
6301 gctggtgatt atgtttgtac catacaatac acttcacccc cctctgatcc ccaaaatcct
6361 aatgctgatg ttgatttctg gtctatccct gattatggtt ccaacttggc tgaggcatca
6421 cagctcgccc cagttgttta cccccctggc ttcggtgagg ctattgtcta cttcatgtcg
6481 cgcatccccg gctggaatag gactaatagg ctcaatctag tcccttgcct gttgccccaa
6541 gagttcattg gacatttcgt cagtgaacaa gcccccgcaa ttggtgaggc tgccctctta
6601 cattatgttg acccagacac caatcggaac ctgggtgaat ttaaattgta ccctgagggt
6661 tttattactt gtgtccctaa tggcacaggc cctcagcagc ttcccctaaa tggtgtcttt
6721 gtcttttctt cctgggtgtc aagattttat caactcaagc ctgtgggaac ggcctctttg
6781 gccagaggta ggcttggcat cagaagataa tggcccaagc cataattggt gctattgcag
6841 cctccgctgc tggcagtgcc cttggggctg gtatccaagc cggcgcagaa gcagcacttc
6901 aaagtcaaag gtatcagcaa gatttgaccc tacagcaaaa ttcatttaaa catgataaag
6961 agatgattgc ctaccaaatg gaaatgtcta ataatttgct tgctaaaaat ctcaatactc
7021 gctattcatt gcttcaggcc ggcggcctgt ctagtgctga tgctgctagg gcggtcgctg
7081 gtgctccggt gactcgcatt gttgattgga atggcactag gattgcagct ccgaattcat
7141 cagcaacaac cttaagatca gggggcttca tgactgtgcc aatgcctttc agcagcaaga
7201 ctagggcacc aagcacttca gggtctattg gcatgaccaa tccaaattac ggtgacacta
7261 tgtcccgtgt ttcctcttgg gtgcaatctc aaaattcttc agtaagaagt gtttcccctt
7321 ttcaccgtgg cgcccttcaa actgtatggg taacaccacc gggttcaact tcttcctcat
7381 ctgtatcttc tgtacctagg tttttcaata ctgacagatt gcctcttttc gcaaatagag
7441 gccgataatg ttgtaataag aatgtgggca tcttattcag aattagataa tttcaattgg
7501 aattttaa
//