Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MH279837 | GII.6 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 1..826
ORF2: 807..2450
ORF3: 2450..3226
LOCUS MH279837 3278 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6b/613/15-BA16/2015 nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279837
VERSION MH279837.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3278)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3278)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3278
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6b/613/15-BA16/2015"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Bari"
/collection_date="05-Nov-2014"
gene <1..826
/gene="ORF1"
CDS <1..826
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AWT08270.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..823
/gene="ORF1"
/product="RdRp"
gene 807..2450
/gene="ORF2"
CDS 807..2450
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08271.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQESTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGRIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 2450..3226
/gene="ORF3"
CDS 2450..3226
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08272.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLSRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
3'UTR 3227..3278
ORIGIN
1 ataccactat gatgcagact actccaggtg ggactcaacc cagcaaagga gcattctctc
61 ggccgctatg gaagtgatgg tgcggttctc tgctgaacca gagctagcac aagtggttgc
121 agaggacctc ctggcaccca gccaactaga tgttggcgat ttcgtcatct cagtccagga
181 gggtctgcca tcaggggttc catgcacatc acaatggaat tcaatagcac actggatcct
241 aaccttgagt gcaatggcag aagtgtcggg tctctcacca gatgttgttc aagcccactc
301 ctgtttctca ttctacggtg atgatgagat cgtcagcact gacatcaacc ttgatcccat
361 gaagttgaca cagaagctta gagagtatgg cctggtcccc acccgacctg acaaaactga
421 gggtcccctc gtaataactg aagatctcac cggcctaacg ttcctgcgta ggtcaattgc
481 acgggaccca gctgggtggt ttggaaaatt ggaccaagac tcaatcctca gacagttgta
541 ctggacaagg ggccccaacc atgagaaccc atatgagagt atggtccctc attcccagcg
601 ggccacacaa cttatggccc ttctcggtga ggcctcactg catggtcccc agttttacaa
661 gaaagttagc aagatggtta ttaatgagat caaaagtggt ggtctggagt tctatgtgcc
721 cagacaagag gccatgttca gatggatgag attctctgac ctcagcacat gggagggcga
781 tcgcaatctt gctcccgagg gtgtgaatga agatggcgtc gaatgacgct gctccatcga
841 atgatggtgc tgccaacctc gtaccagagg ccaccaatga ggttatggca cttgagccgg
901 tggtgggagc ctcaattgct gctcctgtcg tcggccaaca aaatataatt gacccctgga
961 ttagagaaaa ttttgttcag gcaccacagg gtgagtttac tgtttcacca aggaactcac
1021 ctggtgagat gcttctaaat cttgaattag gccctgagct caacccttat ctgagtcact
1081 tgtcccgcat gtataacggc tatgctggtg gtatgcaggt tcaggtggtc ctagctggga
1141 atgcgttcac agctggtaaa atcatctttg ccgccgtccc accacatttc cctgttgaga
1201 acattagtgc agcccaaatc acaatgtgtc cccatgtaat tgttgatgta agacagcttg
1261 agccagtgct tttgcccctc cctgacataa ggaatagatt ctttcattat aatcaggaaa
1321 gtaccccccg gatgagactt gtggctatgt tgtatacacc ccttagagca aattctggtg
1381 aggatgtgtt tacggtgtct tgcagagttc tgactcgccc tgcccccgac tttgagttca
1441 cgtttttggt gccaccaact gtggagtcaa agactaagcc ctttacactc cctatcctga
1501 ctcttggaga gctgtccaac tccaggttcc ccgctccgat agacatgttg tacactgacc
1561 ccaatgaggc aattgtggtg caaccacaaa atggcaggtg cactctagat ggaacacttc
1621 aagggaccac ccaactggta cccacccaaa tttgctcctt caggggcacg ctaatcagcc
1681 agacgtcgag gtctgcagat tcaacagatt cagccccacg ggtgaggaac caccctctcc
1741 acgtccagct gaagaacctc gatgggacac catatgaccc aacagatgag gtgccagcag
1801 ttttgggtgc catagatttc aaaggaactg tgtttggggt cgctagccaa agaaacacca
1861 cagggaactc tataggagca acccgcgccc atgaagtgca catagacacc acaaacccta
1921 gatacactcc aaagcttggc tctgtgttga tgtattctga atctactgat tttgatgatg
1981 gacaacccac ccgctttacc cccattggca tgggagccga tgattggcac caatgggaat
2041 tgcccgaata ttctggtcac ctcactctta acatgaattt ggcccccgca gttgcccctg
2101 ctttccctgg tgagcgcatt ctcttcttca gatcagtggt gccgtctgct ggtggctatg
2161 gatcaggtcg catagattgc ctcatcccac aggagtgggt ccagcatttc taccaggagg
2221 ccgctccatc acagtccgcg gtggctctta tcagatatgt caaccctgac actggaagaa
2281 acatctttga ggcaaaactg catagggaag ggttcatcac tgtggcaaat tctggaaaca
2341 accccatagt tgtgccccca aatggttact tcaggtttga ggcctgggtc aatcaattct
2401 acacactcac ccccatggga actggacagg ggcgcagaag agttcaataa tggcaggagc
2461 tttcttagct ggattggcag gtgacgccat aacaagtggt gtcgggtccc taatcaatgc
2521 tggggccaat gcaattaacc aaaaggtaga atatgacttt aataaacaac tccaattggc
2581 atccttcaaa catgacaaag agatgctgca atcacaagta ctggccacta aacagctcca
2641 gcaggagatg atgaacataa ggcaaggggt cttgtccgct ggcggctttt cccctacaga
2701 tgctgcgaga ggtgctgtga acgcgccgat gacaaaaatt ttggattgga atggaacaag
2761 gtactttgcc ccaaatagta tgaagacaac cagttattcg ggccagtttt ccagcaaccc
2821 tgtgcatagg caacccactt tatcccgttc tgaaccccca aaaattaagg ttaacagtga
2881 ttctgctagt gtgtatagtt ctgcatctac tgctccttca caatcaactc actcaacggc
2941 tttgactgcg gggtctagct catctaggac aacatcctct tctgcagtag cttccaccct
3001 atctaggact agtgactggg tgagaggaca aaatgaaagg cttagcccgt ttatggatgg
3061 tgctctccaa acaacttttg tcacaccacc atcgagcaaa gcttcatcat atgggtcggt
3121 ctcaaccgtt cccaaagctg ttttggactc ctggactcct atgttcaata cccataggca
3181 gcctctcttc gctcatgtgc gcaggcgagg ggagtcacag atttagtgaa aagattgatt
3241 aggttttctt tctttcttct tttccttttc tttctttt
//