Typing tool
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Typing tool
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Complete norovirus genomes
| MH279835 | GII.6 | |
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| GII.P7 |
ORF1: 1..812
ORF2: 793..2436
ORF3: 2436..3212
LOCUS MH279835 3264 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6b/613-15-BA3/2015/ITA
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MH279835
VERSION MH279835.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3264)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3264)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3264
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6b/613-15-BA3/2015/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Bari"
/collection_date="12-Feb-2015"
gene <1..812
/gene="ORF1"
CDS <1..812
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AWT08264.1"
/translation="DYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQL
DVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGD
DEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAG
WFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVS
KMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..809
/gene="ORF1"
/product="RdRp"
gene 793..2436
/gene="ORF2"
CDS 793..2436
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08265.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTSRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNTIGATRAHEVHIDTTNPRYTPKLGSVLMYSESGDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 2436..3212
/gene="ORF3"
CDS 2436..3212
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08266.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQSTSPRSESPKIKVNSDSASVYSSASTTPSQST
HSTALTAGSSSSRTTSSSALASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
3'UTR 3213..3264
ORIGIN
1 cagactattc caggtgggac tcaacccagc aaaggagcat tctctcggcc gctatggaag
61 tgatggtgcg gttctctgct gaaccagagc tggcgcaagt ggttgcagag gatctcctgg
121 cacccagcca actagatgtt ggcgatttcg tcatctcagt ccaggagggt ctgccatcag
181 gggtcccatg tacatcacaa tggaattcaa tagcacactg gatcctaacc ttgagtgcaa
241 tggcagaagt gtcgggtctc tcaccagatg ttgttcaagc ccactcctgt ttctcattct
301 acggtgatga tgagatcgtc agcactgaca tcaaccttga tcccatgaag ttgacacaga
361 agctcagaga gtatggcctg gtccccaccc gacctgacaa aactgaaggt cccctcgtaa
421 taactgaaga tctcactggc ctaacgtttc tgcgtaggtc aattgcacgg gacccagctg
481 ggtggtttgg aaaattggac caagattcaa tcctcagaca gttgtactgg acaaggggcc
541 ccaaccatga gaacccatat gagagcatgg tccctcattc ccagcgagcc acacaactta
601 tggcccttct cggtgaggcc tcactgcatg gtccccagtt ttacaagaaa gttagcaaga
661 tggttattaa tgagatcaaa agtggtggtc tggaattcta tgtgcccaga caagaggcca
721 tgttcagatg gatgagattc tctgacctca gcacatggga gggcgatcgc aatcttgctc
781 ccgagggtgt gaatgaagat ggcgtcgaat gacgctgctc catcgaatga tggtgctgcc
841 aacctcgtac cagaggccac caatgaggtt atggcacttg agccggtggt gggagcctca
901 attgctgctc ctgtcgtcgg ccaacaaaat ataattgacc cctggattag agaaaatttt
961 gttcaggcac cacagggtga gtttactgtt tcaccaagga actcacctgg tgagatgctt
1021 ctaaatcttg aattaggccc tgagctcaac ccttatctga gtcacttgtc ccgcatgtat
1081 aatggctatg ctggtggtat gcaggttcag gtggtcctag ctgggaatgc gttcacagct
1141 ggtaaaatca tctttgccgc cgtcccacca catttccctg ttgaaaacat tagtgcagcc
1201 caaatcacaa tgtgccccca tgtaattgtt gatgtaagac agcttgagcc agtgcttttg
1261 cccctccctg acataaggaa tagattcttt cattataatc aggaaaatac ctcccggatg
1321 agacttgtgg ctatgttgta tacacccctt agagcaaatt ctggtgagga tgtgtttacg
1381 gtgtcttgca gagttctgac ccgccctgcc cccgactttg agttcacgtt tttggtgcca
1441 ccaactgtgg agtcaaagac taagcccttt acactcccta ttctgactct tggagagctg
1501 tccaactcca gattccccgc tccgatagac atgctgtaca ctgaccccaa tgaggcaatt
1561 gtggtgcaac cacaaaatgg caggtgcact ctagatggaa cacttcaagg gaccacccaa
1621 ctggtaccca cccaaatttg ctccttcagg ggcacgctaa ttagccagac gtcgaggtct
1681 gcagattcaa cagattcagc cccacgggtg aggaaccacc ctctccacgt tcagctgaag
1741 aacctcgatg ggacaccata tgacccaaca gatgaggtgc cagcagtttt gggtgccata
1801 gatttcaaag gaactgtgtt tggggtcgct agccaaagaa acaccacagg gaacactata
1861 ggagcaaccc gcgcccatga agtgcacata gacaccacaa atcctagata caccccaaag
1921 cttggctctg tgttgatgta ttctgaatct ggtgattttg atgatggaca acccacccgc
1981 tttaccccca ttggcatggg agccgatgat tggcaccaat gggaattgcc cgaatattct
2041 ggtcacctca ctcttaacat gaatttggcc cccgcagttg cccctgcttt ccctggtgag
2101 cgcattctct tcttcagatc agtggtgccg tctgctggtg gctatgggtc aggtcacata
2161 gattgcctca tcccacagga gtgggttcag catttctacc aggaggccgc tccatcacag
2221 tccgcggtgg ctcttatcag atatgtcaac cctgacactg gaagaaacat ctttgaggca
2281 aaactgcata gagaagggtt catcactgtg gcaaattctg gaaacaaccc catagttgtg
2341 cccccaaatg gttacttcag gtttgaggcc tgggtcaatc aattctacac actcaccccc
2401 atgggaactg gacaggggcg cagaagagtc caataatggc aggagctttc ttagctggat
2461 tggcaggtga cgccataaca agtggtgtcg ggtccctaat caatgctggg gccaatgcaa
2521 ttaaccaaaa ggtagagtat gactttaata aacagctcca attggcatcc ttcaaacatg
2581 acaaagagat gctgcaatca caagtactgg ccactaaaca gctccagcag gagatgatga
2641 acataaggca aggggtcttg tccgctggcg gcttttcccc tacagatgcc gcgagaggtg
2701 ctgtgaacgc gccgatgaca aaaattttgg attggaatgg aacaaggtac tttgccccaa
2761 atagtatgaa gacaaccagt tattcgggcc agttttccag caaccctgtg cataggcaat
2821 ccacttcacc ccgttctgaa tccccaaaaa ttaaggttaa tagtgattct gctagtgtgt
2881 atagttctgc atctactact ccttcacaat caactcactc aacggctttg actgcggggt
2941 ctagctcatc taggacaaca tcctcttctg cattagcttc caccctatct aggactagtg
3001 actgggtgag aggacaaaat gaaaggctta gcccgtttat ggatggtgct ctccaaacaa
3061 cttttgtcac accaccatcg agcaaagctt catcatatgg gtcggtctca accgttccca
3121 aagctgtttt ggactcctgg actcctatgt tcaatactca taggcagcct ctcttcgctc
3181 atgtgcgtag gcgaggggag tcacagattt agtgaaaaga ttgattaggt tttctttctt
3241 tcttcttttc cttttctttc tttt
//