Typing tool
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Typing tool
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Complete norovirus genomes
| MH279834 | GII.6 | |
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| GII.P7 |
ORF1: 1..797
ORF2: 778..2430
ORF3: 2430..3209
LOCUS MH279834 3262 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6a/PA455/2012/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279834
VERSION MH279834.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3262)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3262)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3262
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6a/PA455/2012/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Palermo"
/collection_date="10-Jul-2012"
gene <1..797
/gene="ORF1"
CDS <1..797
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AWT08261.1"
/translation="DSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDF
VISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVS
TDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKL
DQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVIN
EIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPESVNEDGVE"
mat_peptide <1..794
/gene="ORF1"
/product="RdRp"
gene 778..2430
/gene="ORF2"
CDS 778..2430
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08262.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADSTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 2430..3209
/gene="ORF3"
CDS 2430..3209
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08263.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQIA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTASPKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLGPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3210..3262
ORIGIN
1 gggactcaac ccagcaaagg agcattcttt ccgccgccat ggaggtgatg gtgagattct
61 ctgctgaacc agaattggca caagtggtcg cagaggacct tttagcgcct agccagctag
121 atgtcggcga ttttgtcatc tcagtccagg agggcctgcc atcaggagta ccatgtacgt
181 cacaatggaa ttcaatagcg cactggattc taaccctgag tgcaatggca gaagtgtcag
241 gtctctcacc agacgttgtc caagcccact cctgtttctc attttatggc gacgatgaga
301 tcgtcagcac tgacatcaac cttgatccca tgaaattgac acagaaactc agggagtatg
361 gtctggtccc cacccggcct gataagactg aaggccccct cgttataact gaagacctca
421 ccggcctgac attcctgcgc agatcgattg cacgggatcc agctgggtgg tttggaaaat
481 tggatcaaga ctcaatcctc aggcaattat actggacaag agggcccaat catgaaaacc
541 catatgagag catggttcct cactcccagc gagctactca gctcatggcc cttcttggtg
601 aggcttcatt gcatggtccc cagttttaca agaaagtcag caagatggtc atcaatgaaa
661 ttaagagtgg tggtctggag ttttatgtgc ccagacaaga ggccatgttt aggtggatga
721 gattctctga cctcagcaca tgggagggcg atcgcaatct tgctcccgag agtgtgaatg
781 aagatggcgt cgaatgacgc cgctccatca aatgatggcg ctgccaacct cgtaccagag
841 gccaataatg aggttatggc acttgaaccg gtggtaggag cttcaatcgc agctcctgtt
901 gtcggtcagc agaatataat tgacccctgg attagagaaa attttgttca agcaccacag
961 ggcgagttta ctgtttcacc aaggaactcg cccggtgaga tgcttctaaa tcttgaattg
1021 ggcccagagc ttaaccccta tttgagtcat ttgtcccgca tgtacaatgg gtatgctggt
1081 ggcatgcagg ttcaggtggt cctagctggg aatgcgttca cagctgggaa gatcatcttt
1141 gccgctgtgc caccacactt ccctgtggat aatattagtg cagcccagat aactatgtgt
1201 ccccatgtga ttgttgatgt gagacagctt gaaccagtgc ttctacccct ccccgatata
1261 aggaataggt tcttccatta caaccaggaa aatacccccc ggatgaggct cgtggccatg
1321 ctctacacgc ctctaagggc taattccgga gaggatgtgt tcactgtgtc ctgtagggtt
1381 ctgactcgcc ccgctccaga ttttgaattt acatttttag ttccaccaac tgttgaatca
1441 aaaacaaagc cctttacttt acctattcta acccttggtg agttgtctaa ttcccgcttc
1501 cctgctgcca tagatatgct ttacactgat cccaatgaat caatagttgt tcagccccaa
1561 aatggtagat gtacccttga cggcacgctg caaggcacaa cacaattggt cccaacacag
1621 atttgtgcct ttagaggtac tctgatcagc cagaatgcga gagcggccga ttcaacagac
1681 tccccccaga gagcccgtaa tcacccgttg cacgtccagg tcaagaacct agatggcacg
1741 cagtatgatc caacagatga catccctgca gtcctggggg ctattgactt caagggtaca
1801 gtgttcggag tggcaagtca gagggacgtc tctggaacac aagaacaggg ccattatgcc
1861 acccgggctc atgaagcaca cattgacaca actgatccaa agtatgcacc taaattaggc
1921 acaattctca tcaaatctga atctactgat ttcaccacaa atcagcccat taggttcact
1981 ccagtgggca tgggcgacaa caattggaga cagtgggaat tgcctgatta ttctggtagt
2041 ttgactctaa atatgaacct tgcccctgct gtttccccat ccttccctgg cgaacgaatc
2101 cttttcttta ggtctatagt accatcagct ggaggctacg ggtctggcta tatagactgt
2161 ctcatacccc aggaatgggt gcaacatttc taccaggagg cagcaccttc acaatctgct
2221 gttgcactag ttaggtatgt caaccccgac actgggcgca acatctttga ggctaagttg
2281 cacagagaag ggttcctcac cgtggccaat tctggaaaca atcctattgt agttccccct
2341 aatggttatt ttagatttga ggcttgggtt aatcaattct acacacttgc ccccatggga
2401 tctggacagg ggcgtagaag agctcagtaa tggctggagc cttcttcgca gggttagcag
2461 gtgatgtcgt gtcgaacggc atcggttccc tcatcaatgc aggtgctaat gcagttaatc
2521 aaaaggttga gtatgatttt aataagcaac ttcagatagc atcattcaaa catgataagg
2581 agatgttaca atcacaggtg ttggcaacca aacaactgca gcaggagatg atgaacataa
2641 agcaggggat gttgaccgct ggcggctttt ctcctgcgga cgctgctaga ggggctgtta
2701 acgctccaat gacaaaaata ctggactgga atggcacaag atattgggca cctaacagca
2761 tgaaaaccac aagctactca ggacaattct ctagtagccc tgtccacagg tctcctgctc
2821 ccctccagca cactgcctca ccaaaaagta agttgcaaag tgattctgct agtgtgtata
2881 gctccccttc cactgtttct tcacaatcaa ctcattcaac agtgttgtct gcaggaactg
2941 ggtcgtccag atccaccccc acgtccacag caacctccac cctgtctagg accagcgact
3001 gggttagagg acagaatgaa aggcttggcc cgtttatgga tggtgctctc caaactactt
3061 ttgtcacacc accatcgagc aaagcttcat caaatgggac agtctcgacc gtgcccaaag
3121 ctgttttgga ctcctggact cctatgttca acacgcatag gcagcctctc ttcgcccact
3181 tgcgtaggcg aggggagtca cagatttagt gaaaagagtg attaggcttt ctttcccttc
3241 ttccttccct tttctctctt tt
//