Typing tool
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Typing tool
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Complete norovirus genomes
| MH279832 | GII.6 | |
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| GII.P7 |
ORF1: 1..826
ORF2: 807..2459
ORF3: 2459..3238
LOCUS MH279832 3291 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6a/PA309/2011/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279832
VERSION MH279832.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3291)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3291)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3291
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6a/PA309/2011/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Palermo"
/collection_date="31-Oct-2011"
gene <1..826
/gene="ORF1"
CDS <1..826
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AWT08255.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPESVNEDGVE"
mat_peptide <1..823
/gene="ORF1"
/product="RdRp"
gene 807..2459
/gene="ORF2"
CDS 807..2459
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08256.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADSPDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF
TTSQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 2459..3238
/gene="ORF3"
CDS 2459..3238
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08257.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTVSSQS
THSTVLSVGTGSSRSTPTSTATSTLSRTSDWVRGQNERLGPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3239..3291
ORIGIN
1 ataccactat gatgcagact actctaggtg ggactcaacc cagcaaagga gcattctttc
61 cgccgccatg gaggtgatgg tgaggttctc tgctgaacca gaattggcac aagtggtcgc
121 agaggacctt ttagcgccta gccagctaga tgttggcgat tttgtcatct cagtccagga
181 gggcctgcca tcaggagtcc catgtacgtc acagtggaat tcaatagcgc actggattct
241 aactctgagc gcaatggcag aagtgtcagg tctctcacca gacgttgtcc aagcccattc
301 ctgtttctca ttttatggcg acgatgagat cgtcagcact gacatcaacc ttgaccccat
361 gaaattgaca cagaaactca gggagtatgg tctggtcccc acccggcctg ataagactga
421 aggccccctc gttataactg aagacctcac cggcctgaca ttcctgcgca gatcgattgc
481 acgggatcca gctggatggt ttggaaaatt ggatcaagac tcaatcctca ggcaattata
541 ctggacaagg gggcccaatc acgaaaaccc atacgagagc atggtccccc actcccagcg
601 agctactcag ctcatggccc ttcttggtga ggcttcattg catggtcccc agttttacaa
661 gaaagtcagc aagatggtca tcaatgaaat taagagtggt ggtctggagt tttatgtgcc
721 cagacaagag gccatgttta ggtggatgag attctctgac ctcagcacat gggagggcga
781 tcgcaatctt gctcccgaga gtgtgaatga agatggcgtc gaatgacgcc gctccatcaa
841 atgatggtgc tgccaacctc gtaccagagg ccaataatga ggttatggca cttgaaccgg
901 tggtgggagc ttcaatcgca gctcctgttg tcggtcagca gaatataatt gacccctgga
961 ttagagaaaa ttttgttcaa gcaccacagg gcgagtttac tgtttcacca aggaactcgc
1021 ccggtgagat gcttctaaat cttgaattgg gcccagaact taacccctat ttgagtcatt
1081 tgtcccgcat gtacaatggg tatgctggtg gcatgcaggt tcaggtggtc ctagctggga
1141 atgcgttcac agctgggaag atcatctttg ccgctgtgcc accacacttc cctgtggata
1201 atattagtgc agcccagata actatgtgtc cccatgtgat tgttgatgtg agacagcttg
1261 aaccagtgct cctacccctc cccgatataa ggaacaggtt cttccattac aaccaggaaa
1321 acaccccccg gatgaggctc gtggccatgc tctacacgcc tctaagggct aattccggag
1381 aggatgtgtt cactgtgtcc tgtagggttc tgactcgccc cgctccagat tttgaattta
1441 cattcttagt tccaccaact gttgaatcaa aaacaaaacc ctttacccta cctattctaa
1501 cccttggtga gttgtctaac tcccgttttc ctgctgctat agatatgctt tacactgatc
1561 ccaatgaatc aatagttgtt cagccccaaa atggtagatg tacccttgac ggcacgctgc
1621 aaggcacaac acaattggtc ccaacacaga tttgtgcctt tagaggcact ctgatcagcc
1681 aaaatgcgag agcggccgat tcaccagact ccccccagag agcccgtaat cacccgttgc
1741 acgtccaggt caagaaccta gatggcacac agtatgaccc aacagatgat atccccgcag
1801 tcctgggggc tattgacttc aaaggtacag tgttcggagt ggcaagtcag agggacgtct
1861 ctggaacaca agaacagggc cattatgcca cccgggctca tgaagcacac attgacacaa
1921 ctgatccaaa gtatgcacct aaattaggca caattctcat caaatctgaa tctactgatt
1981 tcaccacaag tcagcccatt aggttcactc cagtaggcat gggcgacaac aattggagac
2041 agtgggaatt gcctgactat tctggtagtt tgactctaaa tatgaacctt gcccctgctg
2101 tttccccatc cttccctggt gaacgaatcc ttttctttag gtctatagta ccatcagctg
2161 gaggctacgg gtctggctat atagactgtc tcatacccca ggaatgggtg caacatttct
2221 accaggaggc agcaccttca caatctgctg ttgcactggt taggtatgtc aaccccgaca
2281 ctgggcgtaa catctttgag gccaagctgc acagagaagg gttcctcacc gtggccaatt
2341 ctggaaacaa tcctattgtg gttcccccta atggttattt tagatttgag gcttgggtta
2401 atcaattcta cacacttgcc cccatgggat ctggacaggg gcgtagaaga gctcagtaat
2461 ggctggagcc ttcttcgcag ggttagcagg tgatgtcgtg tcgaacggca tcggttccct
2521 catcaatgca ggtgctaatg cagtcaatca aaaggttgag tatgatttta ataagcaact
2581 tcagatggca tcattcaaac atgataagga gatgttacaa tcacaggtgt tggcaactaa
2641 acaactgcag caggagatga tgaacataaa gcaggggatg ttgaccgctg gcggcttttc
2701 tcctgcggac gctgctagag gggctgttaa cgctccaatg acaaaaatac tggactggaa
2761 tggcacaaga tattgggcac ctaacagcat gaaaaccaca agctactcag gacaattctc
2821 tagtagccct gtccacagat ctcctgctcc cctccagcac actgccccac caaaaagtaa
2881 gttgcaaagt gattctgcta gtgtgtatag ctccccttcc actgtttcct cacaatcaac
2941 tcattcaaca gtgttgtctg taggaactgg gtcgtccaga tccaccccca cgtccacagc
3001 aacctccacc ctgtctagga ccagcgactg ggttagagga cagaatgaaa ggcttggccc
3061 gtttatggat ggtgctctcc aaactacttt tgtcacacca ccatcgagca aagcttcatc
3121 aaatgggaca gtctcgaccg tgcccaaagc tgttttggac tcctggactc ctatgttcaa
3181 cacgcatagg cagcctctct tcgcccactt gcgtaggcga ggggagtcac agatttagtg
3241 aaaagagtga ttaggctttc tttcccttct tccttccctt ttctctcttt t
//