Typing tool
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Typing tool
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Complete norovirus genomes
| MH279831 | GII.6 | |
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| GII.P7 |
ORF1: 1..827
ORF2: 808..2460
ORF3: 2460..3239
LOCUS MH279831 3290 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6a/PA226/2013/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279831
VERSION MH279831.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3290)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3290)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3290
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6a/PA226/2013/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Palermo"
/collection_date="11-May-2013"
gene <1..827
/gene="ORF1"
CDS <1..827
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AWT08252.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..824
/gene="ORF1"
/product="RdRp"
gene 808..2460
/gene="ORF2"
CDS 808..2460
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08253.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADSTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 2460..3239
/gene="ORF3"
CDS 2460..3239
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08254.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLGPFMDGALQTTFVTPPSSK
ASSKGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3240..3290
ORIGIN
1 aataccacta tgatgcagac tactctaggt gggactcaac ccagcaaagg agcattcttt
61 ccgccgccat ggaggtgatg gtgaggttct ctgctgaacc agaattggca caagtggtcg
121 cagaggacct tttagcgccc agccagctag atgttggcga ttttgtcatc tcagtccagg
181 agggcctgcc atcaggagta ccatgtacgt cacaatggaa ttcaatagcg cactggattc
241 taaccctgag cgcaatggca gaagtgtcag gtctctcacc agacgttgtc caagcccact
301 cctgtttctc attttatggc gacgatgaga tcgtcagcac tgacatcaac cttgacccca
361 tgaaattgac acagaaactc agggagtatg gtctggtccc cacccggcct gataagactg
421 aaggccccct cgttataact gaagacctca ccggtctgac attcctgcgc agatcgattg
481 cacgggatcc agctgggtgg tttggaaaat tggatcaaga ctcaatcctc aggcaattat
541 actggacaag ggggcccaat catgaaaacc catatgagag catggttccc cactcccaac
601 gagctactca gctcatggcc cttcttggtg aggcttcact gcatggtccc cagttttaca
661 agaaagtcag caagatggtc atcaatgaaa ttaagagtgg tggtctggag ttttatgtgc
721 ccagacaaga ggccatgttt aggtggatga gattctctga cctcagcaca tgggagggcg
781 atcgcaatct tgctcccgag ggtgtgaatg aagatggcgt cgaatgacgc cgctccatca
841 aatgatggtg ctgccaacct cgtaccagag gccaataatg aggttatggc acttgaaccg
901 gtggtgggag cttcaatcgc agctcctgtt gtcggtcagc agaatataat tgacccctgg
961 attagagaaa attttgttca agcaccacag ggcgagttta ctgtttcgcc aaggaactcg
1021 cccggtgaga tgcttctaaa tcttgaattg ggcccagagc ttaaccccta tttgagtcat
1081 ttgtcccgca tgtacaatgg gtatgctggt ggcatgcagg ttcaggtggt cctagctggg
1141 aatgcgttca cagctgggaa gatcatcttt gccgctgtgc caccacactt ccctgtggat
1201 aatattagtg cagcccagat aactatgtgt ccccatgtga ttgttgatgt gagacagctt
1261 gaaccagtgc ttctacccct ccccgatata aggaacagat tcttccatta caaccaggaa
1321 aacacccccc ggatgaggct cgtggccatg ctctacacgc ctctaagggc taattccgga
1381 gaggatgtgt tcactgtgtc ctgtagggtt ctgactcgcc ccgctccaga ttttgaattt
1441 acatttttag ttccaccaac tgttgaatca aaaacaaaac cctttacttt acctattctg
1501 acccttggtg agttgtctaa ttcccgtttc cctgctgcca tagatatgct ttacactgat
1561 cccaatgaat caatagttgt tcagccccaa aatggtagat gtacccttga cggcacgctg
1621 caaggcacaa cacaattggt cccaacacag atttgtgcct ttagaggtac tctgatcagc
1681 cagaatgcga gagcggccga ttcaacagat tccccccaga gagcccgtaa tcacccgttg
1741 cacgtccagg tcaagaacct agatggcaca cagtatgacc caacagatga catccctgca
1801 gtcctggggg ctattgactt caaaggtaca gtgttcggag tggcaagtca gagggacgtc
1861 tctggaacac aagaacaggg ccattatgcc acccgggctc atgaagcaca cattgacaca
1921 actgatccga agtatgcacc caaattaggc acaattctca tcaaatctga atctactgat
1981 ttcaccacaa atcagcccat taggttcact ccagtgggca tgggcgacaa caattggaga
2041 cagtgggagt tgcctgacta ttctggtagt ttgactctaa atatgaacct tgcccctgct
2101 gtttccccat ccttccctgg tgaacgaatc cttttcttta ggtctatagt accatcagct
2161 ggaggctacg ggtctggcta tatagactgt ctcatacccc aggaatgggt gcaacatttc
2221 taccaggagg cagcaccttc acaatctgct gttgcactgg tcaggtatgt caaccccgac
2281 actgggcgca acatctttga ggctaagctt cacagagaag ggttcctcac cgtggccaat
2341 tctggaaata atcctattgt agttccccct aatggttatt ttagatttga ggcttgggtt
2401 aatcaattct atacacttgc ccccatggga tctggacagg ggcgtagaag agctcagtaa
2461 tggctggagc cttcttcgca gggttagcag gtgatgtcgt gtcgaacggc atcggttccc
2521 tcatcaatgc aggtgctaat gcagttaatc aaaaggttga gtatgatttt aataagcaac
2581 ttcagatggc atcattcaaa catgataagg agatgttaca atcacaggtg ttggcaacca
2641 aacaactgca gcaggagatg atgaacataa agcaggggat gttgaccgct ggcggctttt
2701 ctcctgcgga cgctgctaga ggggctgtta acgctccaat gacaaaaata ctggactgga
2761 atggcacaag atattgggca cctaacagca tgaaaaccac aagctactca ggacaattct
2821 ctagtagccc tgtccacagg tctcctgctc ccctccagca tactgcccca ccaaaaagta
2881 agttgcaaag tgattctgct agtgtgtata gctccccttc tactgtttct tcacaatcaa
2941 ctcattcaac agtgttgtct gcaggaactg ggtcgtccag atccaccccc acgtccacag
3001 caacctccac tctgtctagg accagcgact gggttagagg acagaatgaa aggcttggcc
3061 cgtttatgga tggtgctctc caaactactt ttgtcacacc accatcgagc aaagcttcat
3121 caaaagggac agtctcgacc gtgcccaaag ctgttttgga ctcctggact cctatgttca
3181 acacgcatag gcagcctctc ttcgcccact tgcgtaggcg aggggagtca cagatttagt
3241 gaaaagagtg attaggcttt ctttcccttc ttccttccct ttctctcttt
//