Typing tool
|
Complete norovirus genomes
MH279830 | GII.7 | ||
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GII.P7 |
ORF1: 1..826 ORF2: 807..2429 ORF3: 2429..3202LOCUS MH279830 3272 bp RNA linear VRL 01-MAY-2019 DEFINITION Norovirus GII strain GII.P7_GII.7/PA133/2008/ITA nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MH279830 VERSION MH279830.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3272) AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C. TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3272) AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C. TITLE Direct Submission JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano, Bari 70010, Italia COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 10.2.4 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3272 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="GII.P7_GII.7/PA133/2008/ITA" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Italy: Palermo" /collection_date="01-Nov-2008" gene <1..826 /gene="ORF1" CDS <1..826 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="AWT08249.1" /translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..823 /gene="ORF1" /product="RdRp" gene 807..2429 /gene="ORF2" CDS 807..2429 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="AWT08250.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" gene 2429..3202 /gene="ORF3" CDS 2429..3202 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AWT08251.1" /translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMVDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQFLKVDPSPPSSSGSSVSSVKTQ STTLSGTSRAGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRAS SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI" 3'UTR 3203..3272 ORIGIN 1 ataccactat gatgcagact attctaggtg ggactcaacc caacaaagaa gcattctttc 61 tgccgccatg gaagtgatgg tgcggttttc tgctgaacca gaattggcac aagtggttgc 121 agaggacctt ttggcaccta gccagcttga tgttggcgat tttgtcatct cagtccagga 181 gggtctgcca tcaggagtcc catgtacatc acaatggaat tcaatagcac actggattct 241 aactttgagt gcaatggcag aagtgtcagg tctctcacca gatgttgtcc aagctcactc 301 ttgtttttca ttttatgggg acgatgagat cgtcagtact gacatcaacc ttgaccccat 361 gaagttgaca cagaagctca gggagtacgg tctggtcccc actcggcctg ataaaaccga 421 aggtcccctc gtcataactg aagacctcac cggcctgacg ttccttcgta ggtcgattgc 481 tcgggaccca gctggttggt ttggaaaact ggaccaagat tcaatcctca ggcaactgta 541 ctggacaagg gggcccaacc atgagaaccc gtacgagagc atggttcctc attctcagcg 601 ggccacacag ctcatggccc ttcttggtga ggcctcactg catggtcccc agttttacaa 661 gaaagttagc aagatggtca tcaatgagat taagagtggt ggtctggagt tttatgtgcc 721 cagacaagag gccatgttca ggtggatgag attctctgac ctcagcacat gggagggcga 781 tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc gaatgacgca gctccatcta 841 atgatggtgc agcaggcctc gtaccagaga tcaacaatga ggtcatgccc cttgagcccg 901 tggctggtgc atcgctggcg acaccagttg tcgggcaaca aaatataatt gatccctgga 961 taagaaacaa ttttgtacaa gctcctgcag gtgagtttac agtttcccct agaaattccc 1021 ctggtgaaat tttgcttgat ttggagttgg gaccagaatt gaacccctac ctcgctcatc 1081 tggcccgtat gtacaatggg cacgctggtg gcatggaagt gcaaattgtg ttggctggga 1141 atgcgttcac agctggcaag atcatatttg ctgccatccc tccagggttc ccatatgaaa 1201 atttgtcacc ttcacaaatc acaatgtgcc ctcatgttat aattgatgtt agacaattag 1261 aaccagtcct attacctatg ccagatatca gaaataattt cttccattat aatcagggca 1321 atgatcctaa attgaggctg atagctatgc tctatacccc tttaagagct aataactctg 1381 gtgatgatgt gttcacagtt tcttgtaggg ttcttactaa accgtcacct gattttgaat 1441 tcacattttt agttccccct acggttgaat ccaagaccaa gcagtttaca ttgcccatcc 1501 tcaaaatatc agagatgacc aactcaagat tcccagtgcc agttgaaatg atgtatacag 1561 ctaggaatga gaaccaagtt gtccagccac agaatggtag ggtcacactt gatggcgagc 1621 tattaggtac cacgcccctg ttggctgtca acatctgcaa attcaagggg gaggttatag 1681 ctaagaatgg ggatgtgagg tcctacagga tggacatgga aatcaccaac actgatggca 1741 ccccgattga ccccacagaa gatacacctg gtcccattgg ctcacctgat tttcaaggta 1801 tactctttgg cgttgccagc caacgcaaca agaatgagca aaaccccgcc acgagagccc 1861 atgaagccaa tattaacact ggtggggacc aatatgcccc caaattggcc caagtgaaat 1921 tcttctcaga gtcccaggat ttcgaggtgc accagcccac agttttcacc ccagttggtg 1981 tggcaggcga tacttcccac cctttcagac agtgggtcct gcctcgatat ggtggacatc 2041 tcaccaataa cacccacttg gctccagcag tggcccctct attcccaggt gagcaaatcc 2101 tattcttcag atcacaaata cctagttcag gcggccatga attgggttac atggactgcc 2161 ttgttccaca agaatgggtc caacacttct atcaagaagc tgccacagct cagtctgagg 2221 tggcactcat aaggttcatc aacccagaca ctggcagagt cctctttgag gccaagctgc 2281 acaagcaagg ctttataact gtggctcaca ctggtgacaa cccaattgtt atgccaccaa 2341 atgggtactt tagatttgaa gcctgggtta atcagtttta ctcactcgcc cccgtgggaa 2401 ctgggaatgg gcgcaggagg atccaataat ggctagtgct ttctttgcaa atttggcagg 2461 aggcgttgcc tccaatggaa ttagttcact cataaatgct ggggctaacg ctattaacca 2521 aaaggttgag tttgattata ataaacaact ccaaaatgca tccttctccc atgataagga 2581 aatgctccaa gcccaaattg aagccactaa acgtctgcaa caagagatgg ttgacataaa 2641 acaaggagtg ctgacagctg caggattctc ccctacggat gccgcgaggg gttctgtcgg 2701 cgctccaatg acaaaattag ttgattggag tggcactaga tattgggcac ctggtgccat 2761 gaggacaaca ggctattcag ggacttttac acacttgccc cctatgcagt ctgcttcata 2821 tgttaataat caaaatagac aatttcttaa agtagatcct tctcctcctt cttcgagtgg 2881 ttcttctgtt tcttctgtta aaacacaatc aactaccctc tcgggcactt caagggcggg 2941 ctcctcatct cagtcaaccc tgtcgactag gccgagtaca aggacatctg attgggtgcg 3001 tagtcaaaat gaaaggttga gccccttcat gaatggagcg ttgcaaacaa catacgtaac 3061 gccaccatcc agtagggcat caagtgtcag cacagtctcg accgtgccga aagaggtttt 3121 ggactcctgg acgcctatgt ttaacacaca caggcagcca ctcttcgccc acctgcgtag 3181 gcgaggggag tcacagattt agtgaaaaga ttggttagga aagtttgatt ggtttgttct 3241 tcttttctac tattccttta attctttctt tt //