Typing tool
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Typing tool
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Complete norovirus genomes
| MH279830 | GII.7 | |
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| GII.P7 |
ORF1: 1..826
ORF2: 807..2429
ORF3: 2429..3202
LOCUS MH279830 3272 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.7/PA133/2008/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279830
VERSION MH279830.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3272)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3272)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3272
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.7/PA133/2008/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Italy: Palermo"
/collection_date="01-Nov-2008"
gene <1..826
/gene="ORF1"
CDS <1..826
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AWT08249.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..823
/gene="ORF1"
/product="RdRp"
gene 807..2429
/gene="ORF2"
CDS 807..2429
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08250.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 2429..3202
/gene="ORF3"
CDS 2429..3202
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08251.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMVDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQFLKVDPSPPSSSGSSVSSVKTQ
STTLSGTSRAGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3203..3272
ORIGIN
1 ataccactat gatgcagact attctaggtg ggactcaacc caacaaagaa gcattctttc
61 tgccgccatg gaagtgatgg tgcggttttc tgctgaacca gaattggcac aagtggttgc
121 agaggacctt ttggcaccta gccagcttga tgttggcgat tttgtcatct cagtccagga
181 gggtctgcca tcaggagtcc catgtacatc acaatggaat tcaatagcac actggattct
241 aactttgagt gcaatggcag aagtgtcagg tctctcacca gatgttgtcc aagctcactc
301 ttgtttttca ttttatgggg acgatgagat cgtcagtact gacatcaacc ttgaccccat
361 gaagttgaca cagaagctca gggagtacgg tctggtcccc actcggcctg ataaaaccga
421 aggtcccctc gtcataactg aagacctcac cggcctgacg ttccttcgta ggtcgattgc
481 tcgggaccca gctggttggt ttggaaaact ggaccaagat tcaatcctca ggcaactgta
541 ctggacaagg gggcccaacc atgagaaccc gtacgagagc atggttcctc attctcagcg
601 ggccacacag ctcatggccc ttcttggtga ggcctcactg catggtcccc agttttacaa
661 gaaagttagc aagatggtca tcaatgagat taagagtggt ggtctggagt tttatgtgcc
721 cagacaagag gccatgttca ggtggatgag attctctgac ctcagcacat gggagggcga
781 tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc gaatgacgca gctccatcta
841 atgatggtgc agcaggcctc gtaccagaga tcaacaatga ggtcatgccc cttgagcccg
901 tggctggtgc atcgctggcg acaccagttg tcgggcaaca aaatataatt gatccctgga
961 taagaaacaa ttttgtacaa gctcctgcag gtgagtttac agtttcccct agaaattccc
1021 ctggtgaaat tttgcttgat ttggagttgg gaccagaatt gaacccctac ctcgctcatc
1081 tggcccgtat gtacaatggg cacgctggtg gcatggaagt gcaaattgtg ttggctggga
1141 atgcgttcac agctggcaag atcatatttg ctgccatccc tccagggttc ccatatgaaa
1201 atttgtcacc ttcacaaatc acaatgtgcc ctcatgttat aattgatgtt agacaattag
1261 aaccagtcct attacctatg ccagatatca gaaataattt cttccattat aatcagggca
1321 atgatcctaa attgaggctg atagctatgc tctatacccc tttaagagct aataactctg
1381 gtgatgatgt gttcacagtt tcttgtaggg ttcttactaa accgtcacct gattttgaat
1441 tcacattttt agttccccct acggttgaat ccaagaccaa gcagtttaca ttgcccatcc
1501 tcaaaatatc agagatgacc aactcaagat tcccagtgcc agttgaaatg atgtatacag
1561 ctaggaatga gaaccaagtt gtccagccac agaatggtag ggtcacactt gatggcgagc
1621 tattaggtac cacgcccctg ttggctgtca acatctgcaa attcaagggg gaggttatag
1681 ctaagaatgg ggatgtgagg tcctacagga tggacatgga aatcaccaac actgatggca
1741 ccccgattga ccccacagaa gatacacctg gtcccattgg ctcacctgat tttcaaggta
1801 tactctttgg cgttgccagc caacgcaaca agaatgagca aaaccccgcc acgagagccc
1861 atgaagccaa tattaacact ggtggggacc aatatgcccc caaattggcc caagtgaaat
1921 tcttctcaga gtcccaggat ttcgaggtgc accagcccac agttttcacc ccagttggtg
1981 tggcaggcga tacttcccac cctttcagac agtgggtcct gcctcgatat ggtggacatc
2041 tcaccaataa cacccacttg gctccagcag tggcccctct attcccaggt gagcaaatcc
2101 tattcttcag atcacaaata cctagttcag gcggccatga attgggttac atggactgcc
2161 ttgttccaca agaatgggtc caacacttct atcaagaagc tgccacagct cagtctgagg
2221 tggcactcat aaggttcatc aacccagaca ctggcagagt cctctttgag gccaagctgc
2281 acaagcaagg ctttataact gtggctcaca ctggtgacaa cccaattgtt atgccaccaa
2341 atgggtactt tagatttgaa gcctgggtta atcagtttta ctcactcgcc cccgtgggaa
2401 ctgggaatgg gcgcaggagg atccaataat ggctagtgct ttctttgcaa atttggcagg
2461 aggcgttgcc tccaatggaa ttagttcact cataaatgct ggggctaacg ctattaacca
2521 aaaggttgag tttgattata ataaacaact ccaaaatgca tccttctccc atgataagga
2581 aatgctccaa gcccaaattg aagccactaa acgtctgcaa caagagatgg ttgacataaa
2641 acaaggagtg ctgacagctg caggattctc ccctacggat gccgcgaggg gttctgtcgg
2701 cgctccaatg acaaaattag ttgattggag tggcactaga tattgggcac ctggtgccat
2761 gaggacaaca ggctattcag ggacttttac acacttgccc cctatgcagt ctgcttcata
2821 tgttaataat caaaatagac aatttcttaa agtagatcct tctcctcctt cttcgagtgg
2881 ttcttctgtt tcttctgtta aaacacaatc aactaccctc tcgggcactt caagggcggg
2941 ctcctcatct cagtcaaccc tgtcgactag gccgagtaca aggacatctg attgggtgcg
3001 tagtcaaaat gaaaggttga gccccttcat gaatggagcg ttgcaaacaa catacgtaac
3061 gccaccatcc agtagggcat caagtgtcag cacagtctcg accgtgccga aagaggtttt
3121 ggactcctgg acgcctatgt ttaacacaca caggcagcca ctcttcgccc acctgcgtag
3181 gcgaggggag tcacagattt agtgaaaaga ttggttagga aagtttgatt ggtttgttct
3241 tcttttctac tattccttta attctttctt tt
//