Typing tool
|
Complete norovirus genomes
MH279829 | GII.7 | ||
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GII.P7 |
ORF1: 1..826 ORF2: 807..2429 ORF3: 2429..3202LOCUS MH279829 3270 bp RNA linear VRL 01-MAY-2019 DEFINITION Norovirus GII strain GII.P7_GII.7/PA91/2012/ITA nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MH279829 VERSION MH279829.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3270) AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C. TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution JOURNAL Unpublished REFERENCE 2 (bases 1 to 3270) AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C. TITLE Direct Submission JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano, Bari 70010, Italia COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 10.2.4 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3270 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="GII.P7_GII.7/PA91/2012/ITA" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Italy: Palermo" /collection_date="07-Feb-2012" gene <1..826 /gene="ORF1" CDS <1..826 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="AWT08246.1" /translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..823 /gene="ORF1" /product="RdRp" gene 807..2429 /gene="ORF2" CDS 807..2429 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="AWT08247.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLLAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNADGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" gene 2429..3202 /gene="ORF3" CDS 2429..3202 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="AWT08248.1" /translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQPPKVDPSPPSSSGSSVSSVKTQ STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI" 3'UTR 3203..3270 ORIGIN 1 ataccactat gatgcagact attctaggtg ggactcaacc caacaaagga gcattctttc 61 tgccgctatg gaagtgatgg tgcggttctc tgctgaacca gaattggcac aagtggtcgc 121 agaggacctt ttagcaccta gccagcttga tgttggcgat tttgtcatct cagtccagga 181 gggtctgcca tcaggagtcc catgcacatc acaatggaat tcaatagcac actggatcct 241 aactttgagt gcaatggcag aagtgtcagg tctctcacca gatgttgtcc aagctcactc 301 ttgtttttcc ttttatgggg acgatgagat cgtcagtact gatatcaatc ttgaccccat 361 gaagttgaca cagaaactca gggagtatgg tctggttccc acccggcctg ataaaactga 421 aggtcccctc gtcataactg aagacctcac cggcctgacg ttcctccgta ggtcgattgc 481 tcgggaccca gctggttggt ttggaaagct ggaccaagac tcaatcctta ggcagctgta 541 ctggacaagg gggcctaacc atgagaaccc gtacgagagc atggttcctc attctcagcg 601 ggccacacaa ctcatggccc ttcttggtga ggcctcacta catggccccc agttttacaa 661 gaaagttagc aagatggtca tcaatgagat taagagtggt ggtctggagt tttatgtgcc 721 cagacaagag gccatgttca ggtggatgag attctctgac ctcagcacat gggagggcga 781 tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc gaatgacgca gctccatcta 841 atgatggtgc agcaggcctc gtaccagaga tcaacaatga ggtcatgccc cttgagcccg 901 tggctggtgc atcgctggcg acaccagttg tcgggcaaca aaatataatt gatccctgga 961 taagaaataa ttttgtacaa gctcctgcag gtgagtttac agtttcccct agaaattccc 1021 ctggtgaaat tttgctcgat ttggagttgg gaccagaact aaacccctat ctcgctcatc 1081 tggcccgtat gtacaatggg cacgctggtg gcatggaagt gcaaattgtg ttagctggga 1141 atgcgttcac agctggcaag atcatatttg ctgccatccc tccagggttc ccatatgaaa 1201 acttgtcacc ttcacaaatc acaatgtgcc ctcatgttat aattgatgtt agacaattag 1261 aaccagttct attacctatg ccagatatta gaaacaattt cttccattac aatcagggca 1321 atgacccaaa attgagattg ttagctatgc tctatacccc tttaagggct aataattctg 1381 gtgatgatgt gttcacagtt tcttgtaggg tcctcactaa accgtcacct gattttgaat 1441 tcacattttt ggtcccccct acggttgaat ctaaaaccaa acagttcaca ctgcccatcc 1501 tcaaaatatc agagatgacc aactcaagat tcccagtgcc agtggaaatg atgtacacag 1561 ccaggaatga gaaccaagtt gtccagccac agaatggtag ggtcacactt gatggcgagc 1621 tattaggcac cacacccttg ttggctgtca acatctgcaa attcaagggg gaggttatag 1681 ctaagaatgg agatgtgagg tcctatagga tggacatgga aattaccaac gctgatggca 1741 ccccaattga ccccacagaa gacacacctg gtcccattgg ttcacctgac tttcaaggta 1801 tactctttgg cgttgccagc caacgcaaca agaatgagca aaaccctgcc acgagagccc 1861 atgaagccaa cattaacact ggtggggacc aatatgcccc caaattggcc caagtgaaat 1921 tcttctcaga gtcccaggat ttcgaggtgc accagcccac agttttcacc ccagttggtg 1981 tggcaggcga cacctcccat cctttcagac agtgggtcct gcctcgatac ggtggacatc 2041 tcaccaacaa cacccacttg gctccagcag tggcccccct attcccaggt gagcagattc 2101 tattctttag atcacaaata cccagctcag gcggccatga attgggttac atggactgcc 2161 ttgtcccgca agaatgggtc caacacttct atcaagaagc tgccacagct cagtctgagg 2221 tggcactcat aaggttcatc aacccagaca ctggcagagt cctctttgag gccaagctgc 2281 acaagcaagg ctttataact gtggctcaca ctggtgataa cccaattgtc atgccaccaa 2341 atgggtactt tagatttgaa gcttgggtta atcagtttta ctcactcgcc cccgtgggaa 2401 ctgggaatgg gcgcaggagg atccaataat ggccagtgct ttctttgcaa atttggcagg 2461 aggcgttgcc tccaatggaa ttagttcact cataaatgct ggggctaatg ctattaacca 2521 aaaggttgag tttgattata ataaacaact ccaaaatgca tccttctccc atgataagga 2581 aatgctccaa gcccaaattg aagccaccaa acgtctgcaa caagagatga ttgacataaa 2641 acaaggggtg ctgacagctg cgggattctc tcctacggat gccgcgaggg gttctgtcgg 2701 cgcgccaatg acaaaattag ttgattggag tggcactaga tattgggcgc ctggtgccat 2761 gaggacaaca ggctattcag ggacttttac tcacttgccc cctgtgcagt ctgcttcata 2821 tgttaataat cagaatagac aacctcctaa agtagatccc tctcctcctt cttcgagtgg 2881 ttcttctgtt tcttctgtca aaacacaatc aactaccctc tcaggcactt caagggtggg 2941 ctcctcatct cagtcaaccc tgtcgaccag gccgagcaca aggacatctg attgggtgcg 3001 cagccagaat gaaaggttga gtcccttcat ggatggagcg ttgcaaacaa catatgtaac 3061 gccaccatcc agtagggcat caagtgtcag cacagtctcg accgtgccga aagaggtttt 3121 ggactcctgg acgcctatgt ttaacactca caggcagcca ctcttcgccc atctgcgtag 3181 gcgaggggag tcacagattt agtgaaaaga ttggttagga aagttgatta gtttgctctt 3241 cttttccact attcctttaa ttctttcttt //