Typing tool
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Typing tool
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Complete norovirus genomes
| MH279829 | GII.7 | |
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| GII.P7 |
ORF1: 1..826
ORF2: 807..2429
ORF3: 2429..3202
LOCUS MH279829 3270 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.7/PA91/2012/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279829
VERSION MH279829.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3270)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3270)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3270
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.7/PA91/2012/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Italy: Palermo"
/collection_date="07-Feb-2012"
gene <1..826
/gene="ORF1"
CDS <1..826
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AWT08246.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..823
/gene="ORF1"
/product="RdRp"
gene 807..2429
/gene="ORF2"
CDS 807..2429
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08247.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLLAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNADGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 2429..3202
/gene="ORF3"
CDS 2429..3202
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08248.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQPPKVDPSPPSSSGSSVSSVKTQ
STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3203..3270
ORIGIN
1 ataccactat gatgcagact attctaggtg ggactcaacc caacaaagga gcattctttc
61 tgccgctatg gaagtgatgg tgcggttctc tgctgaacca gaattggcac aagtggtcgc
121 agaggacctt ttagcaccta gccagcttga tgttggcgat tttgtcatct cagtccagga
181 gggtctgcca tcaggagtcc catgcacatc acaatggaat tcaatagcac actggatcct
241 aactttgagt gcaatggcag aagtgtcagg tctctcacca gatgttgtcc aagctcactc
301 ttgtttttcc ttttatgggg acgatgagat cgtcagtact gatatcaatc ttgaccccat
361 gaagttgaca cagaaactca gggagtatgg tctggttccc acccggcctg ataaaactga
421 aggtcccctc gtcataactg aagacctcac cggcctgacg ttcctccgta ggtcgattgc
481 tcgggaccca gctggttggt ttggaaagct ggaccaagac tcaatcctta ggcagctgta
541 ctggacaagg gggcctaacc atgagaaccc gtacgagagc atggttcctc attctcagcg
601 ggccacacaa ctcatggccc ttcttggtga ggcctcacta catggccccc agttttacaa
661 gaaagttagc aagatggtca tcaatgagat taagagtggt ggtctggagt tttatgtgcc
721 cagacaagag gccatgttca ggtggatgag attctctgac ctcagcacat gggagggcga
781 tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc gaatgacgca gctccatcta
841 atgatggtgc agcaggcctc gtaccagaga tcaacaatga ggtcatgccc cttgagcccg
901 tggctggtgc atcgctggcg acaccagttg tcgggcaaca aaatataatt gatccctgga
961 taagaaataa ttttgtacaa gctcctgcag gtgagtttac agtttcccct agaaattccc
1021 ctggtgaaat tttgctcgat ttggagttgg gaccagaact aaacccctat ctcgctcatc
1081 tggcccgtat gtacaatggg cacgctggtg gcatggaagt gcaaattgtg ttagctggga
1141 atgcgttcac agctggcaag atcatatttg ctgccatccc tccagggttc ccatatgaaa
1201 acttgtcacc ttcacaaatc acaatgtgcc ctcatgttat aattgatgtt agacaattag
1261 aaccagttct attacctatg ccagatatta gaaacaattt cttccattac aatcagggca
1321 atgacccaaa attgagattg ttagctatgc tctatacccc tttaagggct aataattctg
1381 gtgatgatgt gttcacagtt tcttgtaggg tcctcactaa accgtcacct gattttgaat
1441 tcacattttt ggtcccccct acggttgaat ctaaaaccaa acagttcaca ctgcccatcc
1501 tcaaaatatc agagatgacc aactcaagat tcccagtgcc agtggaaatg atgtacacag
1561 ccaggaatga gaaccaagtt gtccagccac agaatggtag ggtcacactt gatggcgagc
1621 tattaggcac cacacccttg ttggctgtca acatctgcaa attcaagggg gaggttatag
1681 ctaagaatgg agatgtgagg tcctatagga tggacatgga aattaccaac gctgatggca
1741 ccccaattga ccccacagaa gacacacctg gtcccattgg ttcacctgac tttcaaggta
1801 tactctttgg cgttgccagc caacgcaaca agaatgagca aaaccctgcc acgagagccc
1861 atgaagccaa cattaacact ggtggggacc aatatgcccc caaattggcc caagtgaaat
1921 tcttctcaga gtcccaggat ttcgaggtgc accagcccac agttttcacc ccagttggtg
1981 tggcaggcga cacctcccat cctttcagac agtgggtcct gcctcgatac ggtggacatc
2041 tcaccaacaa cacccacttg gctccagcag tggcccccct attcccaggt gagcagattc
2101 tattctttag atcacaaata cccagctcag gcggccatga attgggttac atggactgcc
2161 ttgtcccgca agaatgggtc caacacttct atcaagaagc tgccacagct cagtctgagg
2221 tggcactcat aaggttcatc aacccagaca ctggcagagt cctctttgag gccaagctgc
2281 acaagcaagg ctttataact gtggctcaca ctggtgataa cccaattgtc atgccaccaa
2341 atgggtactt tagatttgaa gcttgggtta atcagtttta ctcactcgcc cccgtgggaa
2401 ctgggaatgg gcgcaggagg atccaataat ggccagtgct ttctttgcaa atttggcagg
2461 aggcgttgcc tccaatggaa ttagttcact cataaatgct ggggctaatg ctattaacca
2521 aaaggttgag tttgattata ataaacaact ccaaaatgca tccttctccc atgataagga
2581 aatgctccaa gcccaaattg aagccaccaa acgtctgcaa caagagatga ttgacataaa
2641 acaaggggtg ctgacagctg cgggattctc tcctacggat gccgcgaggg gttctgtcgg
2701 cgcgccaatg acaaaattag ttgattggag tggcactaga tattgggcgc ctggtgccat
2761 gaggacaaca ggctattcag ggacttttac tcacttgccc cctgtgcagt ctgcttcata
2821 tgttaataat cagaatagac aacctcctaa agtagatccc tctcctcctt cttcgagtgg
2881 ttcttctgtt tcttctgtca aaacacaatc aactaccctc tcaggcactt caagggtggg
2941 ctcctcatct cagtcaaccc tgtcgaccag gccgagcaca aggacatctg attgggtgcg
3001 cagccagaat gaaaggttga gtcccttcat ggatggagcg ttgcaaacaa catatgtaac
3061 gccaccatcc agtagggcat caagtgtcag cacagtctcg accgtgccga aagaggtttt
3121 ggactcctgg acgcctatgt ttaacactca caggcagcca ctcttcgccc atctgcgtag
3181 gcgaggggag tcacagattt agtgaaaaga ttggttagga aagttgatta gtttgctctt
3241 cttttccact attcctttaa ttctttcttt
//