Typing tool
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Typing tool
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Complete norovirus genomes
| MH279828 | GII.6 | |
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| GII.P7 |
ORF1: 1..807
ORF2: 788..2431
ORF3: 2431..3204
LOCUS MH279828 3252 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6b/PR4741/2015/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279828
VERSION MH279828.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3252)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3252)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3252
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6b/PR4741/2015/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Parma"
/collection_date="Nov-2015"
gene <1..807
/gene="ORF1"
CDS <1..807
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AWT08243.1"
/translation="YSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLD
VGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDD
EIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSVARDPAGW
FGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSK
MVISEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..804
/gene="ORF1"
/product="RdRp"
gene 788..2431
/gene="ORF2"
CDS 788..2431
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08244.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAILVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRDTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLAPMGIGQGRRRVQ"
gene 2431..3204
/gene="ORF3"
CDS 2431..3204
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08245.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPSKVKVNSDSASVYSSASSAPSQST
HSTALTAGSSSSRTTSSSAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKAS
SYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
3'UTR 3205..3252
ORIGIN
1 tattccaggt gggactcaac ccagcaaagg agcattctct cggccgctat ggaagtgatg
61 gtgcggttct ctgccgaacc agagctggca caagtggttg cagaggacct cctggcaccc
121 agccaactag atgttggcga tttcgtcatc tcagtccagg agggtctgcc atcaggggtt
181 ccatgcacat cacaatggaa ttcaatagca cactggatcc taaccttgag tgcaatggca
241 gaagtgtcgg gtctctcacc agatgttgtt caagcccact cctgtttctc attctacggt
301 gatgatgaga tcgtcagcac tgacatcaac cttgatccca tgaagttgac acagaaactc
361 agagagtatg gcctggtccc cacccgacct gacaaaactg agggtcccct cgtaataact
421 gaagacctca ccggcctaac gttcctgcgt aggtcagttg cacgggaccc agctgggtgg
481 tttggaaaat tggaccaaga ctcaatcctc agacagttgt actggacaag gggccccaat
541 catgagaacc catatgagag catggttcct cattcccagc gggccacaca gcttatggcc
601 cttctcggtg aggcttcact gcatggcccc cagttttaca aaaaggttag caagatggtc
661 attagtgaga tcaaaagtgg tggtctggaa ttctatgtgc ccagacaaga ggccatgttc
721 agatggatga gattctctga cctcagcaca tgggagggcg atcgcaatct tgctcccgag
781 ggtgtgaatg aagatggcgt cgaatgacgc cgctccatcg aatgatggtg ctgccaacct
841 cgtaccagag gccaccaatg aggttatggc acttgagccg gtggtgggag cctcaattgc
901 tgctcctgtc gtcggccaac aaaatataat tgacccctgg attagagaaa attttgttca
961 ggcaccacag ggtgagttca ctgtttcacc aaggaactca cctggtgaga tgcttctaaa
1021 tcttgaatta ggccctgagc tcaatcctta tctgagtcac ttgtcccgca tgtataatgg
1081 ctatgctggt ggtatgcagg ttcaggtggt cctagctggg aatgcgttca cagctggtaa
1141 aatcatcttt gccgccgtcc caccacattt tcctgttgag aacattagtg cagcccaaat
1201 tacaatgtgc ccccatgtaa ttgttgatgt aagacagctt gagccagtgc ttttgcccct
1261 ccctgacata aggaatagat tctttcatta taatcaggaa aacacccctc ggatgagact
1321 tgtggctatg ttgtacacac cccttagagc aaactctggt gaggatgtgt ttacagtgtc
1381 ttgcagagtt ctgacccgcc ctgcccccga ctttgaattc acgttcttgg tgccaccaac
1441 tgtggagtca aagactaagc cctttacact ccctattctg actcttggag aactgtccaa
1501 ctccagattc cccgctccga tagacatgtt gtacactgac cctaatgagg cgattttggt
1561 gcaaccacaa aatggcaggt gcactctaga tggaacactt caagggacca cccaactggt
1621 acccacccaa atttgctcct tcaggggcac gctaattagc cagacgtcga ggtctgcaga
1681 ttcaacagat tcagccccac gggtgaggaa ccaccctctc cacgttcagc tgaagaacct
1741 cgatgggaca ccatatgacc caacagatga ggtgccagca gttttgggtg ccatagattt
1801 caaaggaact gtgtttgggg tcgctagtca aagagacacc acagggagct ctataggagc
1861 gacccgcgcc catgaagtgc acatagatac cacaaaccct agatataccc caaagcttgg
1921 ctctgtgttg atgtattctg aatctactga ttttgatgat ggacaaccca cccgctttac
1981 tcccattggc atgggagccg atgattggca ccaatgggaa ttgcccgagt attctggtca
2041 ccttactctt aacatgaatt tggcccccgc agttgcccct gctttccctg gtgagcgcat
2101 tctcttcttt agatcagtgg tgccatctgc tggcggctat ggatcaggtc acatagattg
2161 tctcatccca caggagtggg ttcagcattt ctaccaggag gccgctccat cacagtctgc
2221 ggtggctctt atcagatatg tcaaccctga cactggaaga aacatctttg aggcaaaact
2281 gcatagagaa gggttcatca ctgtggcaaa ttccggaaac aaccccatag ttgtgccccc
2341 aaatggttac ttcaggtttg aggcctgggt caatcaattc tacacactcg cccccatggg
2401 aattggacag gggcgcagaa gagttcaata atggcaggag ctttcttagc tggattggca
2461 ggtgacgcca taacaagtgg tgtcgggtcc ctaatcaatg ctggggccaa tgcaattaat
2521 caaaaggtag agtatgattt caataaacag ctccaattgg catccttcaa acatgacaag
2581 gagatgttgc agtcacaagt actggccact aaacagctcc agcaggaaat gatgaacata
2641 aggcaagggg tcttgtccgc tggcggcttt tcccctacag atgccgcgag aggtgctgtg
2701 aacgcgccga tgacaaaaat tttggattgg aatggaacaa ggtacttcgc cccaaatagt
2761 atgaagacaa ccagttattc gggccagttt tccagcaacc ctgtacatag gcaacccact
2821 ttaccccgtt ctgacccctc aaaagtcaag gttaatagtg attctgctag tgtgtatagt
2881 tctgcatctt ctgctccttc acaatcaacc cactcaacgg ctttgactgc ggggtctagc
2941 tcatctagga cgacatcctc ttctgcagct tccactctat ctagaaccag tgactgggtg
3001 agaggacaaa atgagaggct tagcccgttt atggatggtg ctctccaaac aacttttgtc
3061 acaccaccat cgagcaaggc ttcatcgtat gggtcggtct caaccgttcc caaagctgtt
3121 ttggactcct ggactcctat gttcaatacc cataggcagc ctctcttcgc tcatgtgcgc
3181 aggcgagggg agtcacagat ttagtgaaaa gattgattag gttttctttc ttcttttcct
3241 tttctttctt tt
//