Typing tool
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Typing tool
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Complete norovirus genomes
| MH279827 | GII.6 | |
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| GII.P7 |
ORF1: 1..826
ORF2: 807..2450
ORF3: 2450..3226
LOCUS MH279827 3279 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.6b/PR3020/2015/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279827
VERSION MH279827.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3279)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3279)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3279
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.6b/PR3020/2015/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Parma"
/collection_date="Jul-2015"
gene <1..826
/gene="ORF1"
CDS <1..826
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AWT08240.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..823
/gene="ORF1"
/product="RdRp"
gene 807..2450
/gene="ORF2"
CDS 807..2450
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08241.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESGDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 2450..3226
/gene="ORF3"
CDS 2450..3226
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08242.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQSTSPRSESPKIKVNSDSASVYSSASTTPSQST
HSTALTAGSSSSRTTSSSAVASTISRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
3'UTR 3227..3279
ORIGIN
1 ataccactat gatgcagact attccaggtg ggactcaacc cagcaaagga gcattctctc
61 agccgctatg gaagtgatgg tgcggttctc tgctgaacca gagctggcgc aagtggttgc
121 agaggatctc ctggcaccca gccaactaga tgttggcgat ttcgtcatct cagtccagga
181 gggtctgcca tcaggggtcc catgtacatc acaatggaat tcaatagcac actggatcct
241 aaccttgagt gcaatggcag aagtgtcggg tctctcacca gatgttgttc aagcccactc
301 ctgtttctca ttctacggtg atgatgagat cgtcagcact gacatcaacc ttgatcccat
361 gaagttgaca cagaagctca gagagtatgg cctggtcccc acccgacctg acaaaactga
421 aggtcccctc gtaataactg aagatctcac tggcctaacg tttctgcgta ggtcaattgc
481 acgggaccca gctgggtggt ttggaaaatt ggaccaagat tcaatcctca gacagttgta
541 ctggacaagg ggccccaacc atgagaaccc atatgagagc atggtccctc attcccagcg
601 agccacacaa cttatggccc ttctcggtga ggcctcactg catgggcccc agttttacaa
661 gaaagttagc aagatggtta ttaatgagat caaaagtggt ggtctggaat tctatgtgcc
721 cagacaagag gccatgttca gatggatgag attctctgac ctcagcacat gggagggcga
781 tcgcaatctt gctcccgagg gtgtgaatga agatggcgtc gaatgacgct gctccatcga
841 atgatggtgc tgccaacctc gtaccagagg ccaccaatga ggttatggca cttgagccgg
901 tggtgggagc ctcaattgct gctcctgtcg tcggtcaaca aaatataatt gacccctgga
961 ttagagaaaa ttttgttcag gcaccacagg gtgagtttac tgtttcacca aggaactcac
1021 ctggtgagat gcttctaaat cttgaattag gccctgagct caacccttat ctgagtcact
1081 tgtcccgcat gtataacggc tatgctggtg gtatgcaggt tcaggtggtc ctagctggga
1141 atgcgttcac agctggtaaa atcatctttg ccgccgtccc accacatttc cctgttgaaa
1201 acattagtgc agcccaaatc acaatgtgcc cccatgtaat tgttgatgta agacagcttg
1261 agccagtgct tttgcccctc cctgacataa ggaatagatt ctttcattat aatcaggaaa
1321 ataccccccg gatgagactt gtggctatgt tgtatacacc ccttagagca aattctggtg
1381 aggatgtgtt tacggtgtct tgcagagttc tgacccgccc tgcccccgac tttgagttca
1441 cgtttttggt gccaccaact gtggagtcaa agactaagcc ctttacactc cctattctga
1501 ctcttggaga gctgtccaac tccagattcc ccgctccgat agacatgttg tacactgacc
1561 ccaatgaggc aattgtggtg caaccacaaa atggcaggtg cactctagat ggaacacttc
1621 aaggaaccac ccaactggta cccacccaaa tttgctcctt caggggcacg ctaattagcc
1681 agacgtcgag gtctgcagat tcaacagatt cagccccacg ggtgaggaac caccctctcc
1741 acgttcagct gaagaacctc gatgggacac catatgaccc aacagatgag gtgccagcag
1801 ttttgggtgc catagatttc aaaggaactg tgtttggggt tgctagccaa agaaacacca
1861 cagggagctc tataggagca acccgcgccc atgaagtgca catagacacc acaaacccta
1921 gatacacccc aaagcttggc tctgtgttga tgtattctga atctggtgat tttgatgatg
1981 gacaacccac ccgctttacc cccattggta tgggagccga tgattggcac caatgggaat
2041 tgcccgaata ttctggtcac ctcactctta atatgaattt ggcccccgca gttgcccctg
2101 ctttccctgg tgagcgcatt ctcttcttca gatcagtggt gccgtctgct ggtggctatg
2161 ggtcaggtca catagattgc ctcatcccac aggagtgggt tcagcatttc taccaggagg
2221 ccgctccatc acagtccgcg gtggctctta tcagatatgt caaccctgac actggcagaa
2281 acatctttga ggcaaaactg catagagaag ggttcatcac tgtggcaaat tctggaaata
2341 accccatagt tgtgccccca aatggttact tcaggtttga ggcctgggtc aatcaattct
2401 acacactcac ccccatggga actgggcagg ggcgcagaag agtccaataa tggcaggagc
2461 tttcttagct ggattggcag gtgacgccat aacaagtggt gtcgggtccc taatcaatgc
2521 tggggccaat gcaattaacc aaaaggtaga gtatgacttt aataaacagc tccaattggc
2581 atccttcaaa catgacaaag agatgctgca atcacaagta ctggccacta aacagctcca
2641 gcaggagatg atgaacataa ggcaaggggt cttgtccgct ggcggctttt cccctacaga
2701 tgccgcgaga ggtgctgtga acgcgccgat gacaaaaatt ttggattgga atggaacaag
2761 gtactttgcc ccaaatagta tgaagacaac cagttattcg ggccagtttt ccagcaaccc
2821 tgtgcatagg caatccactt caccccgttc tgaatcccca aaaattaagg ttaatagtga
2881 ttctgctagt gtgtatagtt ctgcatctac tactccttca caatcaactc actcaacggc
2941 tttgactgcg gggtctagct catctaggac aacatcctct tctgcagtag cttccaccat
3001 atctaggact agtgactggg tgagaggaca aaatgaaagg cttagcccgt ttatggatgg
3061 tgctctccaa acaacttttg tcacaccacc atcgagcaaa gcttcatcat atgggtcggt
3121 ctcaaccgtt cccaaagctg ttttggactc ctggactcct atgttcaata cccataggca
3181 gcctctcttc gctcatgtgc gcaggcgagg ggagtcacag atttagtgaa aagattgatt
3241 aggttttctt tctttcttct tttccttttt ctttctttt
//