Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MH279826 | GII.14 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 1..805
ORF2: 786..2396
ORF3: 2396..3190
LOCUS MH279826 3236 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.14/BA202-2/2016/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279826
VERSION MH279826.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3236)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3236)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3236
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.14/BA202-2/2016/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Italy: Bari"
/collection_date="13-Aug-2015"
gene <1..805
/gene="ORF1"
CDS <1..805
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AWT08237.1"
/translation="SRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDV
GDFIISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDE
IVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWF
GKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKM
VINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..802
/gene="ORF1"
/product="RdRp"
gene 786..2396
/gene="ORF2"
CDS 786..2396
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08238.1"
/translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASLAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNGPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLNEEPRYQLQITNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEGKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 2396..3190
/gene="ORF3"
CDS 2396..3190
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08239.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVKAPMTQILDWNG
SRYWAPNSMKTTGYSGTFVSQGIRSSPHLSNQTPSAVKSTKSLPSISSSSSVYSSLST
TPSQSTQSTTLSAGTGSSRPNTVSTKASTLSRTSDWVRGQNEMFGPFMNGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3191..3236
ORIGIN
1 ttctaggtgg gattcaaccc agcagaggag catactttct gccgctatgg aagtgatggt
61 gcggttctct gctgaaccgg aattggcaca agtggttgca gaggaccttt tggcgcctag
121 ccagcttgat gttggtgatt tcatcatctc agtccaggag ggtctgccat caggagtccc
181 atgtacatca cagtggaatt caatagcaca ctggatccta actttgagtg caatggcaga
241 agtgtcaggt ctctcaccag atgtggttca agctcactcc tgcttttcat tctatgggga
301 tgatgaaatc gtcagcactg acatcaacct tgaccccatg aagctgacac aaaaactcag
361 ggaatacggc ctggtcccca cccgacccga caagactgaa ggtccccttg tcataactga
421 agatctcacc ggcctgacgt ttcttcgtag gtcgattgca cgagacccag ccggatggtt
481 tggaaaattg gaccaagatt cgatcctcag gcaactatac tggacaaggg ggcccaacca
541 tgagaacccc tatgagagca tggtccccca ttcccagcga gccacacagc ttatggccct
601 tcttggtgag gcttcactgc atggccctca attttacaag aaagttagca agatggttat
661 taatgagatt aagagtggtg gtctggaatt ttatgtgccc agacaggagg ccatgttcag
721 gtggatgaga ttctctgacc tcagcacatg ggagggcgat cgcaatcttg ctcccgaagg
781 tgtgaatgaa gatggcgtcg aatgacgcta ctccatctga tgatggcgca gccggcctcg
841 taccagagat caacaatgag gttatggctc ttgaacccgt cgctggggcc tcccttgcag
901 cccccgtagt cggccaacag aatataattg atccctggat tagaaataac tttgtacaag
961 ctcctgctgg tgaatttaca gtttccccta gaaactctcc tggagaactt cttcttgatt
1021 tggaattggg tcctgaactt aatccctatc ttgcacatct ggccagaatg tacaatgggc
1081 atgcaggagg aatggaagtg cagatagtac tggctgggaa tgcgttcaca gctggtaaga
1141 tcctatttgc tgccatcccg cctagcttcc cctatgaaaa tttgtcacct gctcaattga
1201 ctatgtgccc ccatgtgata gtggatgtga gacaattaga accagtgctc ctgccaatgc
1261 cagacataag aaatgttttc taccattata atcagaacaa tggtcccaag cttaggcttg
1321 tagctatgct ttatacccct ctgagggcta acaactcagg tgatgacgtg ttcacggtgt
1381 cttgccgcgt tttaacacgc ccttctccag attttcagtt tacttttctg gtcccaccta
1441 cagttgagtc taaaactaag aacttcaccc ttcctgttct cagagtctca gagatgacaa
1501 attcaaggtt ccccgtcgtt ttggaccaaa tgtacacaag caggaatgaa aacatcattg
1561 tccaacccca aaacggcagg tgtacgactg acggtgagct acttggcact accatcttgc
1621 agtctgtgtc tatttgcaac tttaaaggga caatgcaggc aaagctgaat gaggaaccac
1681 ggtaccaact acaaatcacc aacttggatg ggtcacctat agatccaaca gatgatatgc
1741 ctgctcctct tggcacacca gatttccagg ccatgttata tggcgttgca agccagcgct
1801 cttccagaga caatgccacc agggcacatg atgcacagat tgacaccgcg ggtgacacat
1861 tcgccccgaa aattggccag gttcggttta aatcaagctc taatgatttt gacctacatg
1921 accccacaaa attcacacct attggagtca atgtggatga tcagcaccct tttagacagt
1981 ggtccctgcc aaactacggt ggacaccttg ccctgaacaa tcatttagcc ccagctgtga
2041 caccactctt ccctggcgag cagattttgt tctttaggtc atacattcca agcgccggag
2101 gccacacaga cggtgctatg gactgcctgc tgccccaaga gtggatagaa cacttctatc
2161 aggaagcggc tccttcccaa tctgacatcg cactggtaag gttcatcaac cctgacacag
2221 gaagagtgct ctttgaaggt aaattgcaca aacaaggttt cctcacaatt gcagcatctg
2281 gagatcaccc tattgtgatg cccactaatg gttattttag atttgaagct tgggtcaacc
2341 ctttctatac tctcgccccc gtgggaactg ggtctgggcg caggaggatt caataatggc
2401 tggagctttc ctcgcaggct tggcaggtga cgttgtgact tccagcttgg gctcacttgt
2461 gggcgctgga gccaacgcca tcaatcagaa agtggagtat gacttcaaca gacagctcca
2521 ggaggcatct tttagacatg ataaggatat gctcaaagcc caggttgcag caaccgcagg
2581 ccttcaacaa gccatgatag acatcaagcg ggaggcattg accgcaggcg gcttttcccc
2641 cgcagatgct gcaagaggtg cagtcaaagc gcctatgaca cagatccttg attggaatgg
2701 ttctaggtat tgggctccta actctatgaa gacaactggc tattcaggta catttgtttc
2761 ccaaggcatt agaagctccc ctcatctgtc taatcaaact ccaagtgctg ttaaatctac
2821 taaatctttg ccatctatat ctagttcttc tagtgtatac agttctcttt ctactacccc
2881 ctcacaatca acacaatcaa caacgctgtc tgcagggaca gggtcctcca gacctaacac
2941 tgtgtccaca aaggcctcca cactgtcgag gacaagtgac tgggtcagag gccaaaatga
3001 gatgtttggc ccgttcatga atggtgcact ccaaactgct tatgtcacac caccatcgag
3061 cagggcctca tcacaaggga cggtctcgac cgtacccaag gctgttttgg actcctggac
3121 tcccatgttt aacacccaca ggcagcctct cttcgcccac ttgcgtaggc gaggggagtc
3181 acagatttag tgaaaaggat gattagggtt tcttccttcc cccttattat tctttt
//