Typing tool
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Typing tool
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Complete norovirus genomes
| MH218667 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS MH218667 7521 bp RNA linear VRL 11-JUN-2018
DEFINITION Norovirus GII isolate NORO_209_15_12_2015, complete genome.
ACCESSION MH218667
VERSION MH218667.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7521)
AUTHORS Brown,J.R., Roy,S., Shah,D., Williams,C.A., Williams,R., Dunn,H.,
Hartley,J., Harris,K. and Breuer,J.
TITLE Norovirus transmission dynamics in a paediatric hospital using full
genome sequences
JOURNAL Clin. Infect. Dis. (2018) In press
PUBMED 29800111
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7521)
AUTHORS Brown,J.R., Roy,S., Shah,D., Williams,C.A., Williams,R., Dunn,H.,
Hartley,J., Harris,K. and Breuer,J.
TITLE Direct Submission
JOURNAL Submitted (17-APR-2018) Division of Infection and Immunity,
University College London, 90 Gower St, London, London WC1E 6BT,
United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 10.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NORO_209_15_12_2015"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="United Kingdom"
/collection_date="15-Dec-2015"
/note="genotype: GII.P7_GII.6"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AWR17661.1"
/translation="MKMASNDATTAFGSQNSVNDSTNTAPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKASSNDQHCPTVKIGTKTLTVPPEPPNGEDSVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVHPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRKSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGRLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLMAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSVANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGSDLQTYNFDTNRVSAFRKLAADNKYGVMETMRVGAALKS
VKTLEDLKAALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLIYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSGSEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIIVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 5079..6722
/gene="ORF2"
CDS 5079..6722
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="AWR17659.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLGHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLIGQTSRTSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG
AIDFKGTVFGVASQRDVSGQQAGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG
QPIRFTPIGMGDNDWHQWELPDYSGHLTLNMNLAPAVAPAFPGERILFFRSMVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
gene 6722..7498
/gene="ORF3"
CDS 6722..7498
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="AWR17660.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHKSSAPSHTALPKSRLQNDSASVYSFPSSVSSQST
HSTVLSAGTGSSRSTSTSTATPTLSRTSDWVRGQNERLSPFMDGALQTAFVTPPSSKA
SSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta atgacgctac cactgccttt ggcagccaaa actctgtcaa
61 tgacagtact aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttggtttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcat ccagtaatga
181 tcagcactgt cccacagtta agatcgggac caaaacacta acagttcccc ctgagccccc
241 aaatggtgaa gacagcgtgc agtttgatgc gaagtcggaa actgtgcgtg ggctaccaga
301 cttgacaacg gtgcagaatg aacacgaaaa cacaccatac actgtccccc cattgagtga
361 aagggagcac agaccagcca ctgagccgct tcctggcaca atactggaga tgtgggatgg
421 tgagttctac cattactctg tgtacgtcag cggtggcaaa gccctagggg ttcacaagcc
481 ccctgcagcg ataagcctcg cgacgataga actcacaccc atatctcttt attggaggcc
541 cgtttacacc cccaactatc tggtccaccc agacacgtta aaaggcctcg ctggtgagaa
601 gttcccctac acggctttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
661 caatgatacg tggcttagca ggaagagcat ctccaggacc accggcttct ttaaaccata
721 ccagtcttgg aataggaagc cccttccaac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcaatt ctctgcgcac ttggatcact gttttcaaaa ccaatcaagg acctactggg
841 cagacttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cgtttgcggg
901 tatagtagag acagtcatcc tgatggcgga acttttcaac atcttttgga caccgccaga
961 cgtttccagc ttcatagcct ccctgatagg tgattttgaa ttgcaggggc ctgaggacct
1021 ggctgtggaa ctcgtccccg tggtcatggg tggcatagga atggttctcg gctttactgc
1081 tgagaagata ggccgcatgc tgtcgtccgc tgcgtcaaca ctgcgggcgt gcaaagactt
1141 ggggaattat gctcttgaca tactgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaggcc gagatggaaa ctctaagggc gatcgaggat gccgtcctgg acatggaagc
1261 tataggaaac aaccacctca caaccctcct caaggacaag gatagcctta tggccttcat
1321 gaagactctg gatctagaag aggagaaggc aaggaaattg tccaccaagt catcctcgcc
1381 agacattgtc ggcactatta atgccatact ggccagaata gctgctgcca ggtccctttt
1441 acataaggct aaagaagaaa tgtttagtag gatcagaccc gtggttgtta tgatctcggg
1501 tagacccggc attggcaaaa cccacatggc aagacacttg gctaagagtg tcgccaacac
1561 catgagcggc gaccagagag taggactcgt tccacgcaac ggggtcgatc actgggacgc
1621 ctatagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagt tggctgacac ctgcccagta actttgaact gtgataggat
1741 tgagaacaag ggaaagatgt tcgacagcga tgttatcata atcacaacca atttagtcaa
1801 cccagcgccc ctcgattacg taaacttcga ggcgtgctcc agaagggtcg actttctggt
1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagat ttccccggcc aacctgacat
1921 gtggaaggac cattttaagc cagacttttc ccacataaag ctgactctag ccccacaggg
1981 tggatttgac aagaatggta acaccccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg tcgcaggtct tgttcatgag aggagagatg agtttcagct
2101 ccaggggagc gaccttcaaa catacaactt tgacaccaac agggtctctg catttaggaa
2161 gctggccgca gacaacaagt atggggtcat ggagacaatg agagtgggtg cggcgcttaa
2221 gagtgtcaag accttggaag atctgaaagc tgccctgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tacaggaact ccaaataccg agtctcttcc aatggcaaag gctctgtttc
2341 tgttgacaaa gttgaggatc aaacatccca gactgcaaac gaagtgggtg cagcactcct
2401 cagactcagg caggcaagag ccagatacta tgtcagctgc ttccaagatc tcatctacac
2461 tctaatacag gtcgccggag catcattcgt tgtcaacagg atttctaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt ggatccgaaa aggaagtggc
2581 ccaaggtaga tgggagattg aacccaagga cacagaacca gaaggtaaga agggtaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctccagt aaaggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata
2761 cctgcaggat cgggatcgct actatgagga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaaaca
2881 gaggaaggaa gaaagggggg ttcttggttt ggtcactggc tcagacatca ggaagaggag
2941 accagacgac tttcaaccga aaggcaacct gtgggcagac gacaccagga gtgtagatta
3001 taacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggctgg ggcttctggg tctcatccaa cctcctgatc acaacaacac acgtcctgcc
3121 taaggggatt aaggaacttt ttggagttga aatcaaacag attcagattc acaagtctgg
3181 agagttctgc aggtttagat tcccgagacc aatcagacca gatgtcacag ggctcgtgct
3241 ggaggaaggt gctccagaag gcactgtctg ctccatactc gtgaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac gcatgcatcc atgaagatac agggtaggac
3361 cgtcggtggc cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggaccttgg
3421 caccggccct ggtgactgcg gttgccctta tatctacaaa cgtggcaatg atataattgt
3481 cgcgggtgtt cacaccgcag cagcccgggg aggtaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaggcagtcc ttgagggaaa tgagaatctt ggcacttact gcggtgcccc
3601 aatcttgggt ccaggcaagg cgcccaaact tagcacgaag accaagttct ggcgttcatc
3661 accagacgct ttgccgccag gcacttatga gcctgcctac ctgggaggca aagaccctag
3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaagc ccttcacaga
3781 acccaggggc aagccaccta gacctgcagt tttagaagaa gccaaaaaga cagtgatgaa
3841 tgttctagaa caaactattg accctgctaa gccatggacc tactcccaag catgtgcctc
3901 actggacaaa accacttcta gtggtagtcc ccaccatgtc aggaaaaatg accattggaa
3961 tggggaatcc ttcactggcc cccttgcaga ccaagcatcc aaagccaacc tcatgtacga
4021 acaggccaaa catgtgcagc ccgtgtacac ggccgcactc aaagatgagt tagttaaaac
4081 tgacaagatc tacaaaaaga taaagaaaag gctcttatgg gggtcggatc tcggtacaat
4141 gatcagatgt gccagggcct tcggcggtct catggatagc atgaaggcaa gttgcatagc
4201 cctcccatgc agggtaggaa tgaacatgaa tgaagatggt cccatcatat ttgacaaaca
4261 ttccaagtat aggtaccatt atgatgctga ctactccagg tgggactcaa cccagcaaag
4321 gagcatcctt tcggccgcta tggaagtgat ggtgcggttc tctgccgagc cagagctggc
4381 acaagtggtt gcagaggatc tcctggcacc cagccaactg gatgttggcg actttgtcat
4441 ctcagtccag gagggtctgc catcaggggt cccatgtaca tcacaatgga attcaatagc
4501 acattggatc ctgaccttga gtgcaatggc agaagtgtcg ggtctctcac cagatgttgt
4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
4621 tcttgatccc atgaagttga cacaaaaact cagagaatat ggcctggtcc ctactcgacc
4681 tgacaaaact gagggccccc tcgtaataac tgaagacctc accggcctaa cgttcctgcg
4741 taggtcgatt gcacgggacc cagctgggtg gtttggaaaa ttagaccagg actcaatcct
4801 tagacagtta tactggacaa ggggccccaa tcatgagaac ccatatgaga gtatggtccc
4861 tcattcccag cgggccacac agctcatggc ccttctcggt gaggcttcac tgcatggccc
4921 ccagttttac aagaaggtta gcaagatggt catcaatgaa atcaaaagtg gtggtctgga
4981 attttatgtg cccagacaag aggccatgtt tagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc aaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggttatgg
5161 cacttgaacc ggtggtggga gcctcaattg cagctcctgt tgtcggccaa caaaacataa
5221 ttgacccctg gattagagaa aattttgtcc aagcaccaca gggcgagttc accgtctcac
5281 cgaggaactc gcctggtgag atgctattaa atcttgaatt gggcccagaa ctcaaccctt
5341 acttaggtca cctgtcccgt atgtataatg ggtatgctgg tggcatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggga aaatcatctt tgccgccgtg ccaccacatt
5461 tccccgtaga aaacattagt gcagctcaaa taactatgtg cccccatgtg attgtcgatg
5521 tgagacaact tgagccagtg cttctgcccc ttcctgacat aaggaacagg ttctttcatt
5581 acaaccagga gaacaccccc cggatgagac ttgtggctat gctctatacc cccctaaggg
5641 ccaactctgg tgaagatgtg tttactgttt cttgtagggt cttgacccgt cctgcccctg
5701 attttgaatt tactttctta gtgccaccaa ctgttgaatc aaagactaag ccttttacat
5761 tgcctatatt aactcttgga gagctatcta actcaaggtt cccagcccca atagatatgt
5821 tgtacactga cccaaatgag ggaattgtgg tccaaccaca aaatggtagg tgcactcttg
5881 atggcactct gcaaggtacc acacaattgg tccccaccca aatttgtgct ttcaggggca
5941 cactaattgg ccaaacatca agaacttcag actcaaccga ctcagcccct cggagaaggg
6001 atcaccctct ccatgtgcaa ttaaagaacc ttgatggcac gcagtacgac ccaactgatg
6061 aagtgccagc agtccttggt gccattgact tcaaggggac tgtctttggg gtggccagtc
6121 agagagatgt gtcaggacaa caagcggggg caactcgagc tcacgaagtg cacatcaaca
6181 caaccgatcc taggtacaca ccaaaactgg gatccattct catgcactca gagtcggacg
6241 actttgtgac tggacagccg atccgtttca cacccatagg aatgggtgac aacgactggc
6301 accaatggga gctgcctgac tactctggac acctaaccct gaacatgaac cttgccccag
6361 cagttgctcc tgctttcccg ggcgagagga ttcttttctt caggtcaatg gtcccgtctg
6421 ctggtggcta tgggtccgga caaatagatt gcctcatacc acaggaatgg gttcagcatt
6481 tctaccaaga agctgcacca tctcaatccg ccgtggcact cattaggtat gtcaatcctg
6541 acacaggcag aaacatcttt gaggccaaat tgcacaggga aggtttcatc accgtggcaa
6601 attctggcaa caaccccatt gttgtccccc ctaatgggta ctttaggttt gaggcttggg
6661 tgaatcaatt ttatactttg acccccatgg gaactggtca ggggcgtagg aggaatcaat
6721 aatggctagt gcttttcttg caggtcttgc tggcgacgtc ataacaaatg gcgttggatc
6781 tttaataaat gctggagcta atgcagttaa tcagaaagtt gaatatgatt ttaataaaca
6841 gcttcaaatg gcatcattta aacatgataa agagatgttg caatcacaag tgttggcaac
6901 caaacagttg cagcaggaga tgatgaacat aaggcagggg gtgttgaccg ctggcggctt
6961 ctcccccgcg gatgctgcta gaggggccgt caatgcccca atgacaaaga ttctggactg
7021 gaatggcacc agatattggg caccaaacag catgaaaacc acaagttatt caggacagtt
7081 ttctagcagc cctgttcaca agtcctctgc tccttctcac accgctttgc cgaagagtag
7141 attgcaaaat gattctgcta gtgtatatag ctttccttcc tctgtttcct cacaatcaac
7201 ccattcaaca gtgctgtcag caggaaccgg gtcttccagg tccacctcca catccacagc
7261 gacccctacc ttgtctagaa ccagcgactg ggttagggga cagaacgaga ggctcagccc
7321 gtttatggat ggtgctctcc aaactgcctt tgtcacacct ccatcgagca aagcttcttc
7381 aaatggtacg gtctcaaccg ttcccaaagc tgttttggac tcctggaccc ctatgtttaa
7441 cacacacagg cagcctctct tcgcccatct acgtagacga ggggagtcac aagtttagtg
7501 aaaagagtga ttaggttttc t
//