Human calicivirus
Typing tool

Complete norovirus genomes

MG892956  GII.3
 GII.P12

Length: 3,262 | 3 CDS 

ORF1: 1..798
ORF2: 779..2425
ORF3: 2425..3189

LOCUS       MG892956                3262 bp    RNA     linear   VRL 09-MAY-2019
DEFINITION  Norovirus GII strain
            Hu/GII.P12-GII.3/RUS/Novosibirsk/NS17-A1335/2017 nonstructural
            polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene,
            partial cds; and major capsid protein VP1 (ORF2) and minor capsid
            protein VP2 (ORF3) genes, complete cds.
ACCESSION   MG892956
VERSION     MG892956.3
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Molecular epidemiology of human noroviruses associated with
            sporadic gastroenteritis in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine
            (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE   3  (bases 1 to 3262)
  AUTHORS   Zhirakovskaya,E. and Tikunova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2018) Siberian Branch of the Russian Academy of
            Sciences, Institute of Chemical Biology and Fundamental Medicine
            (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
  REMARK    Sequence update by submitter
COMMENT     On May 9, 2019 this sequence version replaced MG892956.2.
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.P12-GII.3/RUS/Novosibirsk/NS17-A1335/2017"
                     /isolation_source="feces"
                     /host="Homo sapiens; sex: F; age: 33 Y"
                     /db_xref="taxon:122929"
                     /country="Russia: Novosibirsk"
                     /collection_date="23-Nov-2017"
                     /note="genotype: GII.P12/GII.3"
     gene            <1..798
                     /gene="ORF1"
     CDS             <1..798
                     /gene="ORF1"
                     /codon_start=1
                     /product="nonstructural polyprotein"
                     /protein_id="AVO62583.2"
                     /translation="WDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGD
                     FKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIV
                     STDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK
                     LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI
                     AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     mat_peptide     <1..795
                     /gene="ORF1"
                     /product="RNA-dependent RNA polymerase"
     gene            779..2425
                     /gene="ORF2"
     CDS             779..2425
                     /gene="ORF2"
                     /codon_start=1
                     /product="major capsid protein VP1"
                     /protein_id="AVO62584.2"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
                     TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
     gene            2425..3189
                     /gene="ORF3"
     CDS             2425..3189
                     /gene="ORF3"
                     /codon_start=1
                     /product="minor capsid protein VP2"
                     /protein_id="AWH61236.2"
                     /translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPSATSTTSMSGGFTNQAMHRTTPNSKMNQAPRSTPSSGSSMRSLSTQITSLSS
                     HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
                     TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
     3'UTR           3190..3241
ORIGIN      
        1 tgggattcaa cacaacaaag agccgtgttg gcagcagcct tagaaatcat ggtcaagttt
       61 tccccagagc cacacctggc ccaaaaggtt gcagaagacc ttctttctcc cagcgtgatg
      121 gacgtgggtg atttcaaaat atcaatcaat gagggtcttc cctccggagt gccctgcacc
      181 tctcaatgga attccatcgc ccactggctc ctcactctct gtgcactctc tgaggtcaca
      241 aacctgtccc ctgacattat tcaggctaat tctctctttt ctttctacgg tgatgatgaa
      301 attgtgagta cagacataaa attggaccca gaaaaactga cagcaaaact caaggaatac
      361 gggttgaaac cgacccgccc tgacaaaact gaagggcctc ttgtcatttc cgaagacctg
      421 aatggcctaa ccttcctgcg gaggaccgtg actcgcgacc cagcaggctg gtttggaaag
      481 ttggaacaga gctcaatact cagacaaatg tactggacta ggggccccaa ccatgaagat
      541 ccatctgaaa caatgatacc acactcccag aggcccatac aattgatgtc tttgctgggt
      601 gaggcagcac tccacggccc agcattctac agcaaaatca gtaaactggt cattgcagag
      661 ttgaaggagg gtggcatgga tttttacgtg ccaaggcaag agccgatgtt cagatggatg
      721 agattctcgg atctgagcac gtgggagggc gatcgcaatc tggctcccag ttttgtgaat
      781 gaagatggcg tcgaatgacg ccaccccatc taatgatggt gccgccggcc tcgtcccaga
      841 gatcaacaat gaggcaatgg cgctagatcc agtggcgggt gcagcgatag cagcacccct
      901 caccggccag caaaatataa ttgatccctg gattatgaat aattttgtgc aagcacctgg
      961 tggtgagttc acagtgtctc ctaggaattc ccctggtgaa gtgctcctca atttggaatt
     1021 gggcccagag ataaacccct atctggccca tcttgctaga atgtataatg gttatgcagg
     1081 tgggtttgaa gtgcaggtag tcctggctgg aaatgcgttt acagcaggaa agataatctt
     1141 tgcagctata ccccctaact tcccaattga caatctaagt gcagcacaga tcacaatgtg
     1201 tccacatgtg attgtggacg tcaggcagct ggaaccagtc aacctcccga tgcctgacgt
     1261 tcgcaataac ttcttccact acaaccaagg gtctgattcg agattgcgct tggttgcaat
     1321 gctgtataca cctcttaggg caaataactc tggggatgat gttttcactg tgtcttgtag
     1381 agtactgact agacctagtc ctgaattttc atttaacttc cttgtgccac ccactgtgga
     1441 gtcaaagaca aaacctttta ccctcccaat tctgactatc tctgaaatgt ctaattctag
     1501 gtttccagtg ccgattgatt ctctgcacac cagcccaact gagaatattg ttgtccagtg
     1561 tcaaaatgga cgcgtcactc ttgatggcga gttgatgggc accactcagc tcttacctag
     1621 tcaaatctgt gctttcaggg gcgtgctcac taggtcaaca agcagggcta gtgaccaggc
     1681 cgacacagca acccctagat tgtttaatta ttattggcac atacaattgg ataatctaaa
     1741 tgggactcct tatgatcctg cagaagacat accaggcccc ctggggacac cagattttcg
     1801 gggtaaagtc tttggcgtgg ccagccaaag aaaccccgac agtacaacta gagcacatga
     1861 agcaaaggtg gacacaacag ctggtcgctt caccccaaaa ctaggctcat tagagatatc
     1921 cactgaatct gatgactttg accaaaacca accaacaaga ttcaccccag ttggcattgg
     1981 ggttgaccat gagtcagact tccagcaatg gtccttaccc gattactctg gccagttcac
     2041 tcacaacatg aacttggccc cagctgttgc tcccaacttc cctggtgagc agctcctttt
     2101 ctttcgctca cagttaccat cttctggtgg gcgatccaat gggattctag attgcctggt
     2161 cccccaagaa tgggtccagc acttctacca agaatcagcc cccgcccaaa cccaggtggc
     2221 tctggttaga tatgtcaacc ctgacactgg tagagtgttg tttgaggcca agctgcacaa
     2281 attaggtttc atgactatag ctaagaatgg tgactctcca ataactgtcc ccccaaatgg
     2341 atactttagg tttgaatctt gggtgaaccc attttacaca cttgccccca tgggaactgg
     2401 gaatgggcgt agaagagttc aataatggct ggtgctttta tagcaggatt agctggtgat
     2461 atattcacaa acactgtagg gtctctagtt aatgcagggg ctaatgctat taatcaaaaa
     2521 gttgattttg aaaataataa atatttgcaa aatgcttcct tcaatcatga taaggaaatg
     2581 ttaaatgcac agattgaggc aacaaagagg ttacaggctg atatgattgc tatcaaacag
     2641 ggggttttga ccgctggcgg cttttccccc actgatgcag ctcgcggggc aatcaacgcc
     2701 cccatgacaa aagtcctaga ttggaatgga acaaggtact gggcaccaag tgccacctct
     2761 acaacctcga tgtcgggtgg cttcacaaac caggctatgc acaggaccac gccaaattct
     2821 aaaatgaacc aggcccccag atccacaccc agcagtgggt cttcaatgag gtcactctca
     2881 acccaaatca ctagtctgag ctcacactcg tccgggtcgt ctcgatccag cggatctaca
     2941 gttgctagct cactaccatc ctctaacagg actagggact gggtcaatca gcaaaatttt
     3001 aatttggaac cacacatgcc tgggtcactt aggacggctt ttgtcactcc accatctagt
     3061 acagcctcta gttcaggcac tgtctcaacc gtgcccaaaa atgttttgga ctcctggaca
     3121 tctgcgttta acacgcgcag acagccgctc ttcgcacacc ttcgtagaag gggggagtca
     3181 aatgtttagt gaaaaggtta tcttaaattt gatttaaatt gaatttgatt tggaatcttt
     3241 taaaaaaaaa aaaaaaaaaa aa
//