Typing tool
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Typing tool
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Complete norovirus genomes
| MG892955 | GII.3 | |
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| GII.P16 |
ORF1: 1..1970
ORF2: 1951..3597
ORF3: 3597..4361
LOCUS MG892955 4435 bp RNA linear VRL 09-MAY-2019
DEFINITION Norovirus GII strain
Hu/GII.P16-GII.3/RUS/Novosibirsk/NS17-A1112/2017 nonstructural
polyprotein (ORF1) gene, partial cds; and major capsid protein VP1
(ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds.
ACCESSION MG892955
VERSION MG892955.4
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4435)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of human noroviruses associated with
sporadic gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4435)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 4435)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On May 9, 2019 this sequence version replaced MG892955.3.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4435
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P16-GII.3/RUS/Novosibirsk/NS17-A1112/2017"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 19 Y"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="20-Jun-2017"
/note="genotype: GII.P16/GII.3"
gene <1..1970
/gene="ORF1"
CDS <1..1970
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AVO62580.2"
/translation="TEAFGVPINQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..437
/gene="ORF1"
/product="3C-like protease"
mat_peptide 438..1967
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 1951..3597
/gene="ORF2"
CDS 1951..3597
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AVO62581.2"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRATLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDTTTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 3597..4361
/gene="ORF3"
CDS 3597..4361
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AZM68771.2"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQASKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTAISSIPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 4362..4414
ORIGIN
1 taacagaggc atttggagtc cccattaacc aaattcagat ccacaaatca ggtgaatttt
61 gccgattcag attcccaaaa ccaattagac cagatgtgac aggaatgatt ttggaagaag
121 gtgcgcctga aggcaccgtg gcaactgtac tcatcaaacg ccccaccgga gagctcatgc
181 ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc atggttggcg
241 gacaaatggg tatgttgctc actggatcaa atgctaaagg aatggatttg ggaacaactc
301 ctggtgactg tggctgtcct tacatctata aaaggggcaa tgactatata gtcattgggg
361 tgcatactgc agcagcccgt ggcggaaaca ccgtcatctg tgccacacag ggaagtgagg
421 gtgaggcaac tcttgagggt ggagatgaca aaggaacata ctgtggggca cccattctag
481 gccctggggg tgcaccaaaa ttgagtacca aaaccaaatt ttggaggtca tcgaacacgc
541 cccttccacc aggaacatat gagcctgcct acctcggtgg ccgtgatccg cgtgttaagg
601 gtgggccctc cttgcagcag gtaatgagag accaattgaa gccattcact gaacccaggg
661 gcaaacctcc aaggccaagt gtattggaag cagccaaaca aaccattatc aatgtcctcg
721 aacaaaccct ggaccctcca caaaaatgga catacgcaca ggcatgtgcc tcacttgaca
781 aaaccacctc cagcgggcat ccccatcacg tccgaaagaa tgaattctgg aatggtgaga
841 ccttcactgg taaattggca gaccaagcat caaaagcaaa tctaatgttt gaggaaggga
901 aacacatgac accagtgtat acagcagcac tcaaggacga gttagtcaag actgagaaaa
961 tctatggaaa gatcaagaag agactgctct ggggctctga cttgtccacc atgatccggt
1021 gcgccaggtc atttggtggg ctcatggatg agatgaaggc acactgcata tcactcccaa
1081 tacgagtcgg catgaatatg aatgaagatg gcccaataat atttgagaaa cactccagat
1141 acaaatacca ctatgatgca gactactctc gttgggattc aacacaacag agggcagtac
1201 tagcagcagc cttggaaatc atggtcagat tctctgcaga accacaattg gcacaaatag
1261 tcgctgagga tctgctggcc cctagtgtag tagatgtagg agactttaaa atcacaataa
1321 atgaagggct cccatctggt gtgccatgca cttctcaatg gaactccatc gcacactggc
1381 tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt atacaagcaa
1441 attccatgtt ctcattttac ggtgatgacg agattgtcag caccgacata aaattggacc
1501 ctgaacagtt aaccgccaag ttgaaggagt acggcctgaa accaacccgc ccagacaaga
1561 ccgagggacc cctgatcatc agtgaagatt tgaacggact cactttcctc cgaaggacgg
1621 taactcgtga cccagctggc tggtttggaa aactggacca aagctcaatt ttgaggcaga
1681 tgtactggac tagaggacca aatcatgaag accccaatga gacaatgata ccccattctc
1741 aaagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga ccctctttct
1801 acagtaaaat cagtaaattg gtcataactg aactcaaaga aggtgggatg gacttttacg
1861 tgccaaggca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc acgtgggagg
1921 gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga cgccgctcca
1981 tctaatgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcgat ggcgctagag
2041 ccagtggcgg gtgcagcgat agcagcacct ctcactggcc agcaaaacat aattgatccc
2101 tggattatga acaattttgt gcaagcacct ggtggtgagt ttacggtgtc ccccagaaat
2161 tcccctggtg aagtccttct taatttggaa ctgggcccag aaataaatcc ctatttggcc
2221 catcttgcta gaatgtataa tggttatgca ggtggatttg aagtgcaggt ggtcctagct
2281 ggaaatgcgt ttacagcagg aaagataatc tttgcagcta ttccccctaa ttttccaatt
2341 gataatttaa gtgcagcaca gatcacaatg tgcccacatg tgattgtgga tgtcagacag
2401 ttggaaccag tcaacctccc gatgcctgac gttcgcaata acttctttca ttataatcaa
2461 gggtctgatt cgaggttacg cctaattgcg atgctatata cacctctcag ggcaaataat
2521 tctggggatg atgtttttac tgtgtcttgt agagtgctaa ctagacctag tcctgatttc
2581 tcattcaatt tccttgtgcc acctactgtg gagtcaaaga caaaaccctt ttcccttcct
2641 atcctgacta tctctgaaat gtccaattct aggttcccag taccaattga ttctctgcac
2701 accagtccta ctgagaatat tgttgttcag tgccaaaatg ggcgcgccac ccttgatggt
2761 gagttgatgg gcaccaccca actcttgcct agccaaatct gcgcttttag gggcgttctc
2821 accagatcaa caagcagggc cagtgaccag gccgatacgg caacccctag attgtttaat
2881 tattattggc atatacaatt ggataatcta aatggaaccc cttatgatcc tgcagaagac
2941 ataccaggcc ccctagggac accagatttt cgtggcaaag tctttggcgt ggccagccag
3001 agaaatcctg ataccacgac tagggcacat gaagcaaaaa tagacaccac atctggccgc
3061 ttcaccccaa agctaggctc attagagata tccactgaat ctagtgattt tgaccaaaac
3121 caaccaacaa gattcacccc agttggcatt ggagttgacc atgaggcaga ctttcaacaa
3181 tggaccctac ccgactacgc tggtcagttt acacacaaca tgaacttagc cccagctgtt
3241 gctcccaact tccctggtga gcagctcctt ttctttcgct cacatttgcc atcttctggt
3301 gggcggtcca acgggattct agactgcctg gtcccccaag aatgggtgca gcacttctac
3361 caagagtcag ccccctctca gtctcaagtg gccctggtta ggtatgttaa ccctgacact
3421 ggtagggtgt tatttgaggc caagctacac aaattaggtt tcatgactat agccaagaat
3481 ggtgattctc caataactgt ccctccaaat ggttatttta ggtttgaatc ttgggtgaac
3541 cccttttaca cacttgcccc catgggaact gggaatgggc gtagaagggt tcagtaatgg
3601 ctggagcttt tatagcagga ttggctggtg atatgctcac aaatactgta ggatctttag
3661 ttaatgcagg agctaatgct attaatcaaa caattgattt tgaaaataat aagtatttgc
3721 aaaatgcttc ttttaatcat gataaggaga tgttgaatgc acaaattgag gcaacaaaga
3781 agttacaggc cgacatgatt gctatcaagc aaggggcctt gaccgctggc ggcttctccc
3841 ctactgatgc agcccgtggg gcaattaatg cccccatgac aaaagtccta gattggaatg
3901 gaacaagata ctgggcacca ggtgccacct ccacaacctc catgtcgggt ggctttacac
3961 atcaaactgt gcacagatcc acaccaaatt ttaaaacgaa ccaggcctcc aaatccacac
4021 ccagcagtgg gtcttcagtg aggtcaaact caacccaaat cactagcctg agctcacact
4081 cgtccgggtc gtctcgatcc agcgggtcta cagctatcag ctcaatacca tcctctagca
4141 ggactaggga ctgggtcaac caacaaaatt ttaatttgga accacacatg cctggatctc
4201 ttaggacagc ttttgtcact ccaccatcta gtacagcctc tagctcaggc acagtctcaa
4261 ccgtgcctaa aaatgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc
4321 tattcgcaca ccttcgcaga aggggggagt caaatgttta gtgaaaagat tattttagat
4381 ttgatttaaa attaggttta atttggaatc ttttaaaaaa aaaaaaaaaa aaaaa
//