Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MG892954 | GII.3 | |
|
|---|---|---|---|
| GII.P21 |
ORF1: 1..2070
ORF2: 2051..3697
ORF3: 3697..4461
LOCUS MG892954 4535 bp RNA linear VRL 09-MAY-2019
DEFINITION Norovirus GII strain
Hu/GII.P21-GII.3/RUS/Novosibirsk/NS17-A1088/2017 nonstructural
polyprotein (ORF1) gene, partial cds; and major capsid protein VP1
(ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds.
ACCESSION MG892954
VERSION MG892954.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4535)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of human noroviruses associated with
sporadic gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4535)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT On May 9, 2019 this sequence version replaced MG892954.2.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4535
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/NS17-A1088/2017"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 23 Y"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="16-May-2017"
/note="genotype: GII.P21/GII.3"
gene <1..2070
/gene="ORF1"
CDS <1..2070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AVO62577.2"
/translation="PSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVPIKQ
IQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTH
ATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGNEGEAMLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPLPPG
TYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQT
IDPPQKWTYAQACASLDKTTSSGHPHHMRKNDCWNGESFIGKLADQASKANLMFEEGK
NMTPVYTGALKDELVKTDKIYGVVKKRLLWGSDLSTMIRCARAFGGLMDELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHL
AQVVAEDLLSPSVMDVGDFRISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLIISEDLNG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSF
VNEDGVE"
mat_peptide <1..537
/gene="ORF1"
/product="3C-like protease"
mat_peptide 538..2067
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 2051..3697
/gene="ORF2"
CDS 2051..3697
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AVO62578.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPVDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENTVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTAIPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQSQP
TRFTPVGIGVDHEADFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 3697..4461
/gene="ORF3"
CDS 3697..4461
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AVO62579.2"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLDAQIEATKKLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVISSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 4462..4514
ORIGIN
1 ccaagcattt ggtcacgaat agtcaacttt ggctcagggt ggggcttttg ggtctcgccc
61 agcctcttca taacatcaac ccatgtcatt ccccaaggcg cgcaggagtt ctttggagtg
121 cctatcaaac aaatacaaat tcacaagtca ggtgagttct gccggcttag gttcccgaaa
181 ccaatcagga cagatgttac aggcatgatc ttggaggaag gtgctccaga aggcactgtt
241 gccacacttc tcatcaagag accaactggg gaactcatgc ccttggcagc caggatgggc
301 acccacgcta ccatgaaaat tcagggtcgc actgttggtg gacagatggg catgctactc
361 acagggtcta acgctaagag catggatttg ggcacaactc ctggcgattg tggttgtccc
421 tatatctaca agagagggaa cgactacgtg gtcattggag ttcacactgc cgccgctcgt
481 ggaggaaaca ccgtcatctg tgcaacccaa ggaaacgagg gtgaggccat gctagaaggt
541 ggtgacaaca agggaactta ttgtggggca ccaatattag gccctggaaa tgcccccaaa
601 ctcagcacca aaaccaaatt ttggaggtct tccaccaccc ccctgccacc cggaacctat
661 gagccagctt atctgggtgg caaggaccct agagtgaaag gtggtccctc actgcaacag
721 gttatgagag accaactaaa accattcact gagcccagag gcaaaccacc caaaccaagt
781 gtgctagaag ctgccaagaa gactataatc aatgtgcttg aacaaacaat agacccacct
841 caaaaatgga catacgcaca agcgtgtgca tcactagaca agaccacttc cagcggtcac
901 cctcaccaca tgcggaagaa cgattgctgg aatggggaat ctttcatagg aaaactggca
961 gaccaagcat caaaggccaa cctaatgttt gaggaaggaa agaacatgac tccagtgtac
1021 acaggagctc tgaaagatga gctagtcaag actgacaaga tctatggggt agtcaagaag
1081 aggctcctgt ggggttcaga cctatcaacc atgatacggt gtgcacgagc cttcggtggg
1141 ctaatggacg agctcaaggc ccattgcgtc acactaccag tcagggttgg tatgaacatg
1201 aatgaggatg gacccataat atttgagaaa cactccagat acaaatacca ttatgatgca
1261 gactactccc gctgggactc aacacaacaa agagcagtgc tagccgcagc cctggaaata
1321 atggtcaaat tctcaccaga accccacctg gcccaggtgg ttgcagaaga ccttttgtct
1381 cccagtgtga tggacgtggg tgatttcagg atatcaatca acgaggggtt gccctctggt
1441 gttccttgca cctcacaatg gaactccatt gctcattggc tcctcacact atgtgcactg
1501 tctgaagtca cagacctgtc ccctgacatc atccaggcga attccctgtt ttccttttat
1561 ggtgatgatg aaatagtgag cacagacatc aaattagacc cagagaagct gacagcaaag
1621 ctgagggaat acgggcttaa accaactcgc cctgacaaaa cagagggacc cttaattatc
1681 tctgaagatt tgaatggcct gaccttcttg cggagaacag tgacccgcga cccggccgga
1741 tggtttggca aactggacca aagttcaata ctcaggcaga tgtactggac caaggggcca
1801 aaccatgaag acccctttga aacaatgata ccacactccc aaagacccat acaactgatg
1861 tcattacttg gtgaagctgc attgcatggt ccatcattct acagtaaaat cagcaaattg
1921 gtcatctcag aactgaaaga gggtggaatg gatttttacg tgcccagaca agaaccaatg
1981 ttcaggtgga tgagattctc agatttgagc acgtgggagg gcgatcgcaa tctggctccc
2041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgccgccgg
2101 cctcgtccca gagatcaaca atgaggcaat ggcgctagag ccagtggcgg gtgcagcgat
2161 agcagcaccc ctcactggtc agcaaaatat aattgatccc tggattatga ataattttgt
2221 tcaagctcct ggtggtgagt ttacagtgtc ccccagaaat tcccctggtg aagtccttct
2281 taatttggaa ctgggcccag aaataaatcc ctacttggcc catcttgcta gaatgtataa
2341 tggttatgca ggtggatttg aggtgcaggt ggtcctagct ggaaatgcgt ttacagcagg
2401 aaagataatc tttgcagcta ttccccccaa ctttccagtt gacaatttaa gtgcagcaca
2461 gatcacaatg tgcccacatg tgattgtgga tgtcagacag ttggaaccag tcaacctccc
2521 gatgcctgac gttcgcaata atttctttca ctataatcaa gggtctgatt cgaggttacg
2581 cctaattgca atgctataca cacctcttag agcaaacaat tctggggatg atgtttttac
2641 tgtgtcttgt agagtgctaa ctagacctag tcctgatttc tcattcaatt tccttgtgcc
2701 acctactgtg gagtcaaaaa caaaaccctt ctccctccct atcctgacta tctctgaaat
2761 gtctaattct aggttcccag taccaattga ttctctgcac accagtccta ctgagaatac
2821 tgttgttcag tgccaaaatg ggcgcgtcac ccttgatggt gagttgatgg gcaccaccca
2881 actcttgcct agccaaatct gtgctttcag gggtgttctc accagatcaa caagcagggc
2941 cagtgaccag gccgatacag caattcctag attgtttaat tattattggc atatacaatt
3001 ggataatcta aatggaaccc cttatgatcc tgcagaagac ataccaggcc ccctagggac
3061 accagatttt cgtggcaaag tctttggcgt ggccagccag agaaatcctg atgccacgac
3121 tagggcacat gaagcaaaga tagacaccac atctggccgc ttcaccccaa agttaggttc
3181 attagagata tccactgaat ctagtgattt tgaccaaagc caaccaacaa gattcacccc
3241 agttggcatt ggggttgacc atgaggcaga ctttcaacaa tgggccctac ccgattacgc
3301 tggtcagttc acacacaaca tgaacttagc cccagctgtt gctcccaact tccctggtga
3361 gcagctcctt ttcttccgct cacatttgcc atcttctggt gggcgatcca acgggattct
3421 agactgcctg gtcccccaag aatgggtaca gcacttctac caagagtcag ccccctctca
3481 gtctcaagtg gccctggtta ggtatgttaa tcctgacact ggtagagtgt tatttgaggc
3541 caagctacac aaattaggtt tcatgactat agctaagaat ggtgattctc caataactgt
3601 tcctccaaat ggatacttta ggtttgaatc ttgggtgaac cccttttaca cacttgcccc
3661 catgggaact gggaatgggc gtagaaggat tcaataatgg ctggagcttt tatagcagga
3721 ttggctggtg atatgctcac aaatactgta ggatctttag ttaatgcagg ggctaatgct
3781 attaatcaaa caattgattt tgaaaataat aaatatttgc aaaatgcttc ttttaatcat
3841 gataaggaga tgttggatgc acaaattgag gcaacaaaga agttacaggc tgatatgatt
3901 gctatcaagc aaggggtctt gactgctggc ggcttctccc ctactgatgc agcccgtggg
3961 gcaattaatg cccccatgac aaaagtccta gattggaatg gaacgagata ctgggcacca
4021 ggtgccacct ccacaacctc gatgtcgggt ggctttacac atcaaactgt gcacagatcc
4081 acaccaaatt ttaaaacgaa ccaggctccc aaatccacac ccagcagtgg gtcttcagtg
4141 aggtcaaact caacccaaat cactagcctg agctcacact cgtccgggtc gtctcgatcc
4201 agcgggtcta cagttatcag ctcgatacca tcctctaaca ggactaggga ctgggtcaac
4261 caacaaaact ttaatttgga accacacatg cctggatctc ttaggacagc ttttgtcact
4321 ccaccatcta gtacagcctc tagctcaggc acagtctcaa ctgtgcccaa aaatgttttg
4381 gactcctgga catctgcgtt taacacgcgc agacagccgc tattcgcaca ccttcgcaga
4441 aggggggagt caaatgttta gtgaaaagat tattttaaat ttggtttaaa attagattta
4501 atttggaatc ttttaaaaaa aaaaaaaaaa aaaaa
//