Typing tool
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Typing tool
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Complete norovirus genomes
| MG892951 | GII.3 | |
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| GII.P16 |
ORF1: 1..1941
ORF2: 1922..3568
ORF3: 3568..3878
LOCUS MG892951 3878 bp RNA linear VRL 09-MAY-2019
DEFINITION Norovirus GII strain
Hu/GII.P16-GII.3/RUS/Novosibirsk/NS17-A947/2017 nonstructural
polyprotein (ORF1) gene, partial cds; major capsid protein VP1
(ORF2) gene, complete cds; and minor capsid protein VP2 (ORF3)
gene, partial cds.
ACCESSION MG892951
VERSION MG892951.2
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3878)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Molecular epidemiology of human noroviruses associated with
sporadic gastroenteritis in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3878)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine
(ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT On Dec 14, 2018 this sequence version replaced MG892951.1.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3878
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P16-GII.3/RUS/Novosibirsk/NS17-A947/2017"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 32 Y"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="15-Mar-2017"
/note="genotype: GII.P16/GII.3"
gene <1..1941
/gene="ORF1"
CDS <1..1941
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZM68768.1"
/translation="QIQIHKSGEFCRFRFPKPIRPDVAGMILEEGAPEGTVATVLIKR
PTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKR
GNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLST
KTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSV
LEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFTGKL
ADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARS
FGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLA
AALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHW
LLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRP
DKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETM
IPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFS
DLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..408
/gene="ORF1"
/product="Pro"
mat_peptide 409..1938
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 1922..3568
/gene="ORF2"
CDS 1922..3568
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AZM68769.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 3568..>3878
/gene="ORF3"
CDS 3568..>3878
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AZM68770.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
T"
ORIGIN
1 caaattcaga tccacaaatc aggtgaattt tgccgattca gattcccaaa gccaattaga
61 ccagatgtgg caggaatgat cttagaagaa ggtgcgcctg aaggcaccgt ggcaactgtg
121 ctcatcaaac gccccaccgg agagctcatg cctcttgcag ccagaatggg gacacacgca
181 accatgaaaa ttcaaggccg catggttggc ggacagatgg gtatgttgct cactgggtca
241 aatgctaaag gaatggattt gggaacaact cctggtgact gtggctgtcc ttacatctat
301 aaaaggggca atgactatat agtcattggg gtgcacactg cagcagcccg tggtggaaac
361 accgtcatct gtgccacaca gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac
421 aaaggaacat actgtggggc acccattcta ggccctgggg gtgcaccaaa attgagcacc
481 aaaaccaaat tttggaggtc atcgaacacg ccccttccac caggaacata tgagcctgcc
541 tacctcggtg gccgtgatcc gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga
601 gaccagttga agccattcac tgaacccagg ggcaaacccc caagaccaag tgtattggaa
661 gcagccaaac aaaccattat caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg
721 acatacgcac aggcgtgtgc ctcacttgac aaaaccacct ccagcgggca cccccatcac
781 gtccgaaaga atgaattctg gaatggtgag accttcactg gtaaattggc agaccaagca
841 tcaaaagcaa acctaatgtt tgaggagggg aaacacatga caccagtgta tacagcagca
901 ctcaaggacg agctagtcaa gaccgagaaa atctatggaa agatcaagaa gagactgctc
961 tggggctctg acttgtccac catgatccgg tgcgctaggt catttggtgg gctcatggac
1021 gagatgaagg cacactgcat atcactccca gtacgagttg gcatgaatat gaatgaagat
1081 ggcccaataa tatttgagaa acattccaga tataaatatc actatgatgc agactactct
1141 cgttgggatt caacacaaca gagggcagta ctagcagcag ccttggaaat catggtcaga
1201 ttctctgcag aaccacaatt ggcacaaata gtcgctgagg atctgctggc ccctagtgta
1261 gtagatgtag gagactttaa aatcacaata aatgaagggc tcccatctgg tgtgccatgc
1321 acttctcaat ggaactccat tgcacactgg ctgctaactc tctgtgcctt gtctgaggtc
1381 accaaactgt cccctgacat tatacaggca aactccatgt tctcatttta cggtgatgac
1441 gagattgtca gcaccgatat aaaattggac cctgaacagt taaccgccaa gttgaaggag
1501 tacggcctga aaccaacccg cccagacaag accgagggac ccctgatcat cagtgaagat
1561 ttaaacggac tcactttcct ccgaaggacg gtgactcgtg acccagctgg ttggtttgga
1621 aagctggacc aaagctcaat tttgaggcag atgtactgga ctagaggtcc aaatcatgaa
1681 gaccccaatg agacaatgat accccattcc caaagaccca tacagctcat ggcactgctt
1741 ggtgaagcct ctcttcacgg accctctttc tacagtaaaa tcagtaaatt ggtcataact
1801 gaactcaaag aaggtgggat ggacttttac gtgccaaggc aggaacccat gttcaggtgg
1861 atgaggtttt ctgacttgag cacgtgggag ggcgatcgca atctggctcc caattttgtg
1921 aatgaagatg gcgtcgaatg acgccacccc atctaatgat ggtgccgccg gcctcgtccc
1981 agagatcaac aatgaggcaa tggcgctaga tccagtggcg ggtgcagcga tagcagcacc
2041 cctcaccggc cagcaaaata taattgatcc ctggattatg aataattttg tgcaagcacc
2101 tggtggtgag ttcacagtgt ctcctaggaa ttcccctggt gaagtgctcc tcaatttgga
2161 attgggccca gagataaacc cctatctggc ccatcttgct agaatgtata atggttatgc
2221 aggtggattt gaagtgcagg tagtcctggc tggaaatgcg tttacagcag gaaagataat
2281 ctttgcagct atacccccta acttcccaat tgacaatcta agtgcagcac agatcacaat
2341 gtgcccacat gtgattgtgg atgtcaggca gctggaacca gtcaacctcc cgatgcctga
2401 cgttcgcaat aacttcttcc actacaacca agggtctgat tcgaaattgc gcctggttgc
2461 aatgctgtat acacctctta gggcaaataa ctctggggat gatgttttca ctgtgtcttg
2521 tagagtgctg actagaccta gtcctgaatt ttcatttaac ttccttgtgc cacccactgt
2581 ggagtcaaag acaaaacctt ttaccctccc aattctgact atctctgaaa tgtctaattc
2641 taggtttcca gtgccgattg attctctgca caccagccca actgagaata ttgttgtcca
2701 gtgtcaaaat ggacgcgtca ctcttgatgg cgagttgatg ggcaccactc agctcttacc
2761 tagtcaaatc tgtgctttca ggggcgtgct cactaggtca acaagcaggg ctagtgacca
2821 ggccgacaca gcaaccccta gattgtttaa ttattattgg cacatacaat tggataatct
2881 aaatgggact ccttatgatc ctgcagaaga cataccaggc cccctaggga caccagattt
2941 tcggggtaaa gtctttggcg tggccagcca aagaaacccc gacagtacaa ctagagcaca
3001 tgaagcaaag gtggacacaa cagctggtcg cttcacccca aaactaggct cattagagat
3061 atccactgaa tctggtgact ttgaccaaaa ccaaccaaca agattcaccc cagttggcat
3121 tggggttgac catgagtcag acttccagca atggtcctta cccgattact ctggccagtt
3181 cactcacaac atgaacttgg ccccagctgt tgctcccaac ttccctggtg agcagctcct
3241 tttcttccgc tcacagttac catcttctgg tgggcgatcc aatgggattc tagattgcct
3301 ggtcccccaa gaatgggtcc agcacttcta ccaagaatca gcccccgccc aaacccaggt
3361 ggctctggtt agatatgtca accctgacac tggtagagtg ttgtttgagg ccaagctgca
3421 caaattaggt ttcatgacta tagctaagaa tggtgactct ccaataactg tccccccaaa
3481 tggatacttt aggtttgaat cttgggtgaa cccattttac acacttgccc ccatgggaac
3541 tgggaatggg cgtagaagag ttcaataatg gctggtgctt ttatagcagg attagctggt
3601 gatatactca caaatactgt agggtctcta gttaatgcag gggctaatgc tattaatcaa
3661 aaggttgatt ttgaaaataa taaatatttg caaaatgctt ccttcaatca tgataaggaa
3721 atgttaaatg cacagattga ggcaacaaag agattacagg ctgatatgat tgctatcaaa
3781 cagggggttt tgaccgctgg cggcttttcc cccactgatg cagctcgcgg ggcaatcaac
3841 gcccccatga caaaagtcct agattggaat ggaacaag
//