Typing tool
|
Complete norovirus genomes
MG892950 | GII.3 | ||
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GII.P12 |
ORF1: 1..800 ORF2: 781..2427 ORF3: 2427..3191LOCUS MG892950 3264 bp RNA linear VRL 09-MAY-2019 DEFINITION Norovirus GII strain Hu/GII.P12-GII.3/RUS/Novosibirsk/NS17-A928/2017 nonstructural polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds. ACCESSION MG892950 VERSION MG892950.2 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3264) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Molecular epidemiology of human noroviruses associated with sporadic gastroenteritis in Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 3264) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia COMMENT On May 9, 2019 this sequence version replaced MG892950.1. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3264 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.P12-GII.3/RUS/Novosibirsk/NS17-A928/2017" /isolation_source="feces" /host="Homo sapiens; sex: F; age: 69 Y" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="15-Feb-2017" /note="genotype: GII.P12/GII.3" gene <1..800 /gene="ORF1" CDS <1..800 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="AVO62566.1" /translation="WDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGD FKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIV STDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..797 /gene="ORF1" /product="RNA-dependent RNA polymerase" gene 781..2427 /gene="ORF2" CDS 781..2427 /gene="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="AVO62567.1" /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIAVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ" gene 2427..3191 /gene="ORF3" CDS 2427..3191 /gene="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="AVO62568.2" /translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQITSLSS HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV" 3'UTR 3192..3243 ORIGIN 1 ggtgggattc aacacaacaa agagccgtgt tggcagcagc cttagaaatc atggtcaagt 61 tttccccaga gccacacctg gcccaaaagg ttgcagaaga ccttctttct cccagcgtga 121 tggacgtggg tgatttcaaa atatcaatca atgagggtct cccctccgga gtgccctgca 181 cctcccaatg gaattccatc gcccactggc tcctcactct ctgtgcactc tctgaggtta 241 caaacctgtc ccctgacatt attcaggcta attctctctt ttctttctac ggtgatgatg 301 aaattgtgag tacagacata aaattggacc cagaaaaact gacagcaaaa ctcaaggaat 361 acgggttgaa accgacccgc cctgacaaaa ctgaagggcc tcttgtcatt tccgaagacc 421 tgaatggcct aaccttcctg cggaggaccg tgactcgcga cccagcaggc tggtttggaa 481 agttggaaca gagctcaata ctcagacaaa tgtactggac taggggcccc aaccatgaag 541 atccatctga aacaatgata ccacactccc agaggcccat acaattgatg tctttgctgg 601 gtgaggcagc actccacggc ccagcattct acagcaaaat cagtaaactg gtcattgcag 661 agttgaagga gggtggcatg gatttttacg tgccaaggca agagccgatg ttcagatgga 721 tgagattctc ggatctgagc acgtgggagg gcgatcgcaa tctggctccc agttttgtga 781 atgaagatgg cgtcgaatga cgccacccca tctaatgatg gtgccgccgg cctcgtccca 841 gagatcaaca atgaggcaat ggcgctagat ccagtggcgg gtgcagcgat agcagcaccc 901 ctcaccggcc agcaaaatat aattgatccc tggattatga ataattttgt gcaagcacct 961 ggtggtgagt tcacagtgtc tcctaggaat tcccctggtg aagtgctcct caatttggaa 1021 ttgggcccag agataaaccc ctatctggcc catcttgcta gaatgtataa tggttatgca 1081 ggtgggtttg aagtgcaggt agtcctggct ggaaatgcgt ttacagcagg aaagataatc 1141 tttgcagcta taccccctaa cttcccaatt gacaatctaa gtgcagcaca gatcacaatg 1201 tgcccacatg tgattgtgga tgtcaggcag ctggaaccag tcaacctccc aatgcctgac 1261 gttcgcaata acttcttcca ctacaaccaa gggtctgatt cgaggttgcg cttggttgca 1321 atgctgtata cacctcttag ggcaaataac tctggggatg atgttttcac tgtgtcttgt 1381 agagtgctga ctagacctag tcctgaattt tcatttaact tccttgtgcc acccactgtg 1441 gagtcaaaga caaaaccttt taccctccca attctgacta tctctgaaat gtctaattct 1501 aggtttccag tgccgattga ttctctgcac accagcccaa ctgagaatat tgctgtccag 1561 tgtcaaaatg gacgcgtcac tcttgatggc gagttgatgg gcaccactca gctcttacct 1621 agtcaaatct gtgctttcag gggcgtgctc actaggtcaa caagcagggc tagtgaccag 1681 gccgacacag caacccctag attgtttaat tattattggc acatacaatt ggataatcta 1741 aatgggactc cttatgatcc tgcagaagac ataccaggcc ccctagggac accagatttt 1801 cggggtaaag tctttggcgt ggccagccaa agaaaccccg acagtacaac tagagcacat 1861 gaagcaaagg tggacacaac agctggtcgc ttcaccccaa aactaggctc attagagata 1921 tccactgaat ctggtgactt tgaccaaaac caaccaacaa gattcacccc agttggcatt 1981 ggggttgacc atgagtcaga cttccagcaa tggtccttac ccgattactc tggccagttc 2041 actcacaaca tgaacttggc cccagctgtt gctcccaact tccctggtga gcagctcctt 2101 ttcttccgct cacagttacc atcttctggt gggcgatcca atgggattct agattgcctg 2161 gtcccccaag aatgggtcca gcacttctac caagaatcag cccccgccca aacccaggtg 2221 gctctggtta gatatgtcaa ccctgacact ggtagagtgt tgtttgaggc caagctgcac 2281 aaattaggtt tcatgactat agctaagaat ggtgactctc caataactgt ccccccaaat 2341 ggatacttta ggtttgaatc ttgggtgaac ccattttaca cacttgcccc catgggaact 2401 gggaatgggc gtagaagagt tcaataatgg ctggtgcttt tatagcagga ttagctggtg 2461 atatactcac aaatactgta gggtctctag ttaatgcagg ggctaatgct attaatcaaa 2521 aagttgattt tgaaaataat aaatatttgc aaaatgcttc cttcaatcat gataaggaaa 2581 tgttaaatgc acagattgag gcaacaaaga gattacaggc tgatatgatt gctatcaaac 2641 agggggtttt gaccgctggc ggcttttccc ccactgatgc agctcgcggg gcaatcaacg 2701 cccccatgac aaaagtccta gattggaatg gaacaaggta ctgggcacca agtgccacct 2761 ctacaacctc gatgtcgggt ggcttcacaa accaggctgt gcacaggacc acgccaaatt 2821 ttaaaatgaa ccaggcccct agatccacac ccagcagtgg gtcttcagtg aggtcactct 2881 caacccaaat cactagtctg agctcacact cgtccgggtc gtctcgatcc agcggatcta 2941 cagttgctag ctcactacca tcctctaaca ggactaggga ctgggtcaat cagcaaaatt 3001 ttaatttgga accacacatg cctgggtcac ttaggacggc ttttgtcact ccaccatcta 3061 gtacagcctc tagttcaggc actgtctcaa ccgtgcccaa aaatgttttg gactcctgga 3121 catctgcgtt taacacgcgc agacagccgc tcttcgcaca ccttcgtaga aggggggagt 3181 caaatgttta gtgaaaaggt tatcttaaat ttgatttaaa ttgaatttga tttggaatct 3241 tttaaaaaaa aaaaaaaaaa aaaa //