Typing tool
|
Complete norovirus genomes
MG892949 | GII.3 | ||
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GII.P12 |
ORF1: 1..798 ORF2: 779..2425 ORF3: 2425..3189LOCUS MG892949 3274 bp RNA linear VRL 09-MAY-2019 DEFINITION Norovirus GII strain Hu/GII.P12-GII.3/RUS/Novosibirsk/NS17-A929/2017 nonstructural polyprotein, RNA-dependent RNA polymerase region, (ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds. ACCESSION MG892949 VERSION MG892949.2 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3274) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Molecular epidemiology of human noroviruses associated with sporadic gastroenteritis in Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 3274) AUTHORS Zhirakovskaya,E. and Tikunova,N. TITLE Direct Submission JOURNAL Submitted (05-FEB-2018) Siberian Branch of the Russian Academy of Sciences, Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS), 8 Lavrentiev Avenue, Novosibirsk 630090, Russia COMMENT On Dec 14, 2018 this sequence version replaced MG892949.1. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3274 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.P12-GII.3/RUS/Novosibirsk/NS17-A929/2017" /isolation_source="feces" /host="Homo sapiens; sex: F; age: 26 Y" /db_xref="taxon:122929" /country="Russia: Novosibirsk" /collection_date="12-Feb-2017" /note="genotype: GII.P12/GII.3" gene <1..798 /gene="ORF1" CDS <1..798 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AVO62563.1" /translation="WDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGD FKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIV STDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..795 /gene="ORF1" /product="RNA-dependent RNA polymerase" gene 779..2425 /gene="ORF2" CDS 779..2425 /gene="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="AVO62564.1" /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ" gene 2425..3189 /gene="ORF3" CDS 2425..3189 /gene="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="AVO62565.2" /translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQITSLSS HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV" 3'UTR 3190..3241 ORIGIN 1 tgggattcaa cacaacaaag agccgtgttg gcagcagcct tagaaatcat ggtcaagttt 61 tccccagagc cacacctggc ccaaaaggtt gcagaagacc ttctttctcc cagcgtgatg 121 gacgtgggtg atttcaaaat atcaatcaat gagggtctcc cctccggagt gccctgcacc 181 tcccaatgga attccatcgc ccactggctc ctcactctct gtgcactctc tgaggttaca 241 aacctgtccc ctgacattat tcaggctaat tctctctttt ctttctacgg tgatgatgaa 301 attgtgagta cagacataaa attggaccca gaaaaactga cagcaaaact caaggaatac 361 gggttgaaac cgacccgccc tgacaaaact gaagggcctc ttgtcatttc cgaagacctg 421 aatggcctaa ccttcctgcg gaggaccgtg actcgcgacc cagcaggctg gtttggaaag 481 ttggaacaga gctcaatact cagacaaatg tactggacta ggggccccaa ccatgaagat 541 ccatctgaaa caatgatacc acactcccag aggcccatac aattgatgtc tttgctgggt 601 gaggcagcac tccacggccc agcattctac agcaaaatca gtaaactggt cattgcagag 661 ttgaaggagg gtggcatgga tttttacgtg ccaaggcaag agccgatgtt cagatggatg 721 agattctcgg atctgagcac gtgggagggc gatcgcaatc tggctcccag ttttgtgaat 781 gaagatggcg tcgaatgacg ccaccccatc taatgatggt gccgccggcc tcgtcccaga 841 gatcaacaat gaggcaatgg cgctagatcc agtggcgggt gcagcgatag cagcacccct 901 caccggccag caaaatataa ttgatccctg gattatgaat aattttgtgc aagcacctgg 961 tggtgagttc acagtgtctc ctaggaattc ccctggtgaa gtgctcctca atttggaatt 1021 gggcccagag ataaacccct atctggccca tcttgctaga atgtataatg gttatgcagg 1081 tgggtttgaa gtgcaggtag tcctggctgg aaatgcgttt acagcaggaa agataatctt 1141 tgcagctata ccccctaact tcccaattga caatctaagt gcagcacaga tcacaatgtg 1201 cccacatgtg attgtggatg tcaggcagct ggaaccagtc aacctcccga tgcctgacgt 1261 tcgcaataac ttcttccact acaaccaagg gtctgattcg agattgcgct tggttgcaat 1321 gctgtataca cctcttaggg caaataactc tggggatgat gttttcactg tgtcttgtag 1381 agtgctgact agacctagtc ctgaattttc atttaacttc cttgtgccac ccactgtgga 1441 gtcaaagaca aaacctttta ccctcccaat tctgactatc tctgaaatgt ctaattctag 1501 gtttccagtg ccgattgatt ctctgcacac cagcccaact gagaatattg ttgtccagtg 1561 tcaaaatgga cgcgtcactc ttgatggcga gttgatgggc accactcagc tcttacctag 1621 tcaaatctgt gctttcaggg gcgtgctcac taggtcaaca agcagggcta gtgaccaggc 1681 cgacacagca acccctagat tgtttaatta ttattggcac atacaattgg ataatctaaa 1741 tgggactcct tatgatcctg cagaagacat accaggcccc ctagggacac cagattttcg 1801 gggtaaagtc tttggcgtgg ccagccaaag aaaccccgac agtacaacta gagcacatga 1861 agcaaaggtg gacacaacag ctggtcgctt caccccaaaa ctaggctcat tagagatatc 1921 cactgaatct gatgactttg accaaaacca gccaacaaga ttcaccccag ttggcattgg 1981 ggttgaccat gagtcagact tccagcaatg gtccttaccc gattactctg gccagttcac 2041 tcacaacatg aacttggccc cagctgttgc tcccaacttc cctggtgagc agctcctttt 2101 cttccgctca cagttaccat cttctggtgg gcgatccaat gggattctag attgcctggt 2161 cccccaagaa tgggtccagc acttctacca agaatcagcc cccgcccaaa cccaggtggc 2221 tctggttaga tatgtcaacc ctgacactgg tagagtgttg tttgaggcca agctgcataa 2281 attaggtttc atgactatag ctaagaatgg tgactctcca ataactgtcc ccccaaatgg 2341 atactttagg tttgaatctt gggtgaaccc attttacaca cttgccccca tgggaactgg 2401 gaatgggcgt agaagagttc aataatggct ggtgctttta tagcaggatt agctggtgat 2461 atactcacaa atactgtagg gtctctagtt aatgcagggg ctaatgctat taatcaaaaa 2521 gttgattttg aaaataataa atatttgcaa aatgcttcct tcaatcatga taaggaaatg 2581 ttaaatgcac agattgaggc aacaaagaga ttacaggctg atatgattgc tatcaaacag 2641 ggggttttga ccgctggcgg cttttccccc actgatgcag ctcgcggggc aatcaacgcc 2701 cccatgacaa aagtcctaga ttggaatgga acaaggtact gggcaccaag tgccacctct 2761 acaacctcga tgtcgggtgg cttcacaaac caggctgtgc acaggaccac gccaaatttt 2821 aaaatgaacc aggcccccag atccacaccc agcagtgggt cttcagtgag gtcactctca 2881 acccaaatca ctagtctgag ctcacactcg tccgggtcgt ctcgatccag cggatctaca 2941 gttgctagct cactaccatc ctctaacagg actagggact gggtcaatca gcaaaatttt 3001 aatttggaac cacacatgcc tgggtcactt aggacggctt ttgtcacccc accatctagt 3061 acagcctcta gttcaggcac tgtctcaacc gtgcccaaaa atgttttgga ctcctggaca 3121 tctgcgttta acacgcgcag acagccgcta ttcgcacacc ttcgtagaag gggggagtca 3181 aatgtttagt gaaaaggtta tcttaaattt gatttaaatt ggatttgatt tggaatcttt 3241 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //